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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 402, 447 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 510, 863 |
| AccB1I | GGYRCC | 2 cut(s) | 620, 644 |
| AccBSI | CCGCTC | 1 cut(s) | 475 |
| AciI | CCGC | 2 cut(s) | 475, 618 |
| AclWI | GGATC | 2 cut(s) | 335, 742 |
| AcvI | CACGTG | 1 cut(s) | 566 |
| AcyI | GRCGYC | 1 cut(s) | 664 |
| AfaI | GTAC | 1 cut(s) | 314 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 462, 532 |
| AflIII | ACRYGT | 3 cut(s) | 39, 505, 563 |
| AgsI | TTSAA | 7 cut(s) | 101, 124, 131, 160, 408, 754, 889 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 160 |
| AjiI | CACGTC | 2 cut(s) | 308, 865 |
| AleI | CACNNNNGTG | 1 cut(s) | 878 |
| AluBI | AGCT | 6 cut(s) | 188, 346, 368, 543, 782, 808 |
| AluI | AGCT | 6 cut(s) | 188, 346, 368, 543, 782, 808 |
| Alw21I | GWGCWC | 1 cut(s) | 607 |
| Alw44I | GTGCAC | 1 cut(s) | 603 |
| AlwI | GGATC | 2 cut(s) | 335, 742 |
| AoxI | GGCC | 1 cut(s) | 631 |
| ApaLI | GTGCAC | 1 cut(s) | 603 |
| ApeKI | GCWGC | 1 cut(s) | 917 |
| AspS9I | GGNCC | 1 cut(s) | 512 |
| AsuHPI | GGTGA | 2 cut(s) | 863, 865 |
| AvaII | GGWCC | 1 cut(s) | 512 |
| BaeGI | GKGCMC | 3 cut(s) | 468, 607, 625 |
| BanI | GGYRCC | 2 cut(s) | 620, 644 |
| BauI | CACGAG | 3 cut(s) | 331, 389, 434 |
| BbrPI | CACGTG | 1 cut(s) | 566 |
| Bbv12I | GWGCWC | 1 cut(s) | 607 |
| BbvI | GCAGC | 1 cut(s) | 904 |
| BccI | CCATC | 3 cut(s) | 236, 272, 842 |
| BceAI | ACGGC | 1 cut(s) | 618 |
| BciVI | GTATCC | 1 cut(s) | 301 |
| BfaI | CTAG | 1 cut(s) | 608 |
| BfmI | CTRYAG | 1 cut(s) | 918 |
| BfuI | GTATCC | 1 cut(s) | 301 |
| BisI | GCNGC | 1 cut(s) | 918 |
| BlsI | GCNGC | 1 cut(s) | 919 |
| Bme18I | GGWCC | 1 cut(s) | 512 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 160 |
| BmgBI | CACGTC | 2 cut(s) | 308, 865 |
| BmgT120I | GGNCC | 1 cut(s) | 512 |
| BmiI | GGNNCC | 4 cut(s) | 479, 513, 622, 646 |
| BmsI | GCATC | 2 cut(s) | 461, 904 |
| BsaAI | YACGTR | 1 cut(s) | 566 |
| BsaBI | GATNNNNATC | 1 cut(s) | 858 |
| BsaHI | GRCGYC | 1 cut(s) | 664 |
| BsaJI | CCNNGG | 2 cut(s) | 628, 634 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 580, 610 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 462, 532 |
| Bse3DI | GCAATG | 2 cut(s) | 764, 769 |
| Bse8I | GATNNNNATC | 1 cut(s) | 858 |
| BseDI | CCNNGG | 2 cut(s) | 628, 634 |
| BseGI | GGATG | 2 cut(s) | 384, 452 |
| BseJI | GATNNNNATC | 1 cut(s) | 858 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 462, 532 |
| BseMI | GCAATG | 2 cut(s) | 764, 769 |
| BseMII | CTCAG | 1 cut(s) | 360 |
| BseRI | GAGGAG | 2 cut(s) | 101, 606 |
| BseSI | GKGCMC | 3 cut(s) | 468, 607, 625 |
| BseXI | GCAGC | 1 cut(s) | 904 |
| BshFI | GGCC | 1 cut(s) | 633 |
| BshNI | GGYRCC | 2 cut(s) | 620, 644 |
| BsiHKAI | GWGCWC | 1 cut(s) | 607 |
| BslFI | GGGAC | 2 cut(s) | 148, 675 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 462, 532 |
| BsmFI | GGGAC | 2 cut(s) | 148, 675 |
| BsmI | GAATGC | 1 cut(s) | 429 |
| BsnI | GGCC | 1 cut(s) | 633 |
| Bsp1286I | GDGCHC | 3 cut(s) | 468, 607, 625 |
| Bsp143I | GATC | 3 cut(s) | 45, 327, 734 |
| BspACI | CCGC | 2 cut(s) | 475, 618 |
| BspANI | GGCC | 1 cut(s) | 633 |
| BspCNI | CTCAG | 1 cut(s) | 361 |
| BspLI | GGNNCC | 4 cut(s) | 479, 513, 622, 646 |
| BspMAI | CTGCAG | 1 cut(s) | 922 |
| BspPI | GGATC | 2 cut(s) | 335, 742 |
| BspT107I | GGYRCC | 2 cut(s) | 620, 644 |
| BsrBI | CCGCTC | 1 cut(s) | 475 |
| BsrDI | GCAATG | 2 cut(s) | 764, 769 |
| BssECI | CCNNGG | 2 cut(s) | 628, 634 |
| BssMI | GATC | 3 cut(s) | 45, 327, 734 |
| BssNI | GRCGYC | 1 cut(s) | 664 |
| BssSI | CACGAG | 3 cut(s) | 331, 389, 434 |
| BssT1I | CCWWGG | 1 cut(s) | 628 |
| Bst2BI | CACGAG | 3 cut(s) | 331, 389, 434 |
| BstACI | GRCGYC | 1 cut(s) | 664 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 144, 683 |
| BstBAI | YACGTR | 1 cut(s) | 566 |
| BstC8I | GCNNGC | 1 cut(s) | 769 |
| BstDEI | CTNAG | 4 cut(s) | 277, 369, 423, 809 |
| BstDSI | CCRYGG | 1 cut(s) | 634 |
| BstF5I | GGATG | 2 cut(s) | 384, 452 |
| BstKTI | GATC | 3 cut(s) | 48, 330, 737 |
| BstMBI | GATC | 3 cut(s) | 45, 327, 734 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 144, 472, 683, 768, 814, 830 |
| BstNSI | RCATGY | 2 cut(s) | 43, 509 |
| BstSFI | CTRYAG | 1 cut(s) | 918 |
| BstSLI | GKGCMC | 3 cut(s) | 468, 607, 625 |
| BstV1I | GCAGC | 1 cut(s) | 904 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 508, 635 |
| BsuI | GTATCC | 1 cut(s) | 301 |
| BsuRI | GGCC | 1 cut(s) | 633 |
| BtgI | CCRYGG | 1 cut(s) | 634 |
| BtrI | CACGTC | 2 cut(s) | 308, 865 |
| BtsCI | GGATG | 2 cut(s) | 384, 452 |
| Cac8I | GCNNGC | 1 cut(s) | 769 |
| Cfr13I | GGNCC | 1 cut(s) | 512 |
| CseI | GACGC | 1 cut(s) | 672 |
| Csp6I | GTAC | 1 cut(s) | 313 |
| CviAII | CATG | 8 cut(s) | 13, 40, 205, 377, 506, 576, 614, 641 |
| CviQI | GTAC | 1 cut(s) | 313 |
| DdeI | CTNAG | 4 cut(s) | 277, 369, 423, 809 |
| DpnI | GATC | 3 cut(s) | 47, 329, 736 |
| DpnII | GATC | 3 cut(s) | 45, 327, 734 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 510, 863 |
| DriI | GACNNNNNGTC | 1 cut(s) | 160 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 510, 863 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 160 |
| Eco130I | CCWWGG | 1 cut(s) | 628 |
| Eco47I | GGWCC | 1 cut(s) | 512 |
| Eco72I | CACGTG | 1 cut(s) | 566 |
| EcoT14I | CCWWGG | 1 cut(s) | 628 |
| EcoT22I | ATGCAT | 1 cut(s) | 454 |
| ErhI | CCWWGG | 1 cut(s) | 628 |
| FaeI | CATG | 8 cut(s) | 16, 43, 208, 380, 509, 579, 617, 644 |
| FaqI | GGGAC | 2 cut(s) | 148, 675 |
| FatI | CATG | 8 cut(s) | 12, 39, 204, 376, 505, 575, 613, 640 |
| Fnu4HI | GCNGC | 1 cut(s) | 918 |
| FokI | GGATG | 2 cut(s) | 371, 439 |
| Fsp4HI | GCNGC | 1 cut(s) | 918 |
| FspBI | CTAG | 1 cut(s) | 608 |
| GluI | GCNGC | 1 cut(s) | 918 |
| HaeIII | GGCC | 1 cut(s) | 633 |
| HgaI | GACGC | 1 cut(s) | 672 |
| Hin1I | GRCGYC | 1 cut(s) | 664 |
| Hin1II | CATG | 8 cut(s) | 16, 43, 208, 380, 509, 579, 617, 644 |
| HinfI | GANTC | 2 cut(s) | 53, 104 |
| HphI | GGTGA | 2 cut(s) | 863, 865 |
| Hpy166II | GTNNAC | 4 cut(s) | 221, 515, 605, 883 |
| Hpy188I | TCNGA | 3 cut(s) | 29, 172, 895 |
| Hpy188III | TCNNGA | 5 cut(s) | 57, 101, 331, 391, 434 |
| Hpy8I | GTNNAC | 4 cut(s) | 221, 515, 605, 883 |
| HpyAV | CCTTC | 4 cut(s) | 118, 530, 548, 833 |
| HpyCH4IV | ACGT | 4 cut(s) | 307, 565, 583, 864 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 452, 605, 677, 686, 762, 767, 907, 920 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 144, 472, 683, 768, 814, 830 |
| HpyF3I | CTNAG | 4 cut(s) | 277, 369, 423, 809 |
| HpySE526I | ACGT | 4 cut(s) | 307, 565, 583, 864 |
| Hsp92I | GRCGYC | 1 cut(s) | 664 |
| Hsp92II | CATG | 8 cut(s) | 16, 43, 208, 380, 509, 579, 617, 644 |
| Kzo9I | GATC | 3 cut(s) | 45, 327, 734 |
| LmnI | GCTCC | 3 cut(s) | 135, 472, 805 |
| LpnPI | CCDG | 1 cut(s) | 514 |
| Lsp1109I | GCAGC | 1 cut(s) | 904 |
| LweI | GCATC | 2 cut(s) | 461, 904 |
| MaeI | CTAG | 1 cut(s) | 608 |
| MaeII | ACGT | 4 cut(s) | 307, 565, 583, 864 |
| MaeIII | GTNAC | 2 cut(s) | 545, 566 |
| MalI | GATC | 3 cut(s) | 47, 329, 736 |
| MbiI | CCGCTC | 1 cut(s) | 475 |
| MboI | GATC | 3 cut(s) | 45, 327, 734 |
| MboII | GAAGA | 3 cut(s) | 259, 406, 848 |
| MhlI | GDGCHC | 3 cut(s) | 468, 607, 625 |
| MmeI | TCCRAC | 2 cut(s) | 397, 918 |
| Mph1103I | ATGCAT | 1 cut(s) | 454 |
| MseI | TTAA | 3 cut(s) | 209, 695, 927 |
| MslI | CAYNNNNRTG | 4 cut(s) | 389, 618, 878, 912 |
| Mva1269I | GAATGC | 1 cut(s) | 429 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 144, 472, 683, 768, 814, 830 |
| NdeII | GATC | 3 cut(s) | 45, 327, 734 |
| NlaIII | CATG | 8 cut(s) | 16, 43, 208, 380, 509, 579, 617, 644 |
| NlaIV | GGNNCC | 4 cut(s) | 479, 513, 622, 646 |
| NmuCI | GTSAC | 2 cut(s) | 545, 566 |
| NsiI | ATGCAT | 1 cut(s) | 454 |
| NspI | RCATGY | 2 cut(s) | 43, 509 |
| OliI | CACNNNNGTG | 1 cut(s) | 878 |
| PciI | ACATGT | 2 cut(s) | 39, 505 |
| PctI | GAATGC | 1 cut(s) | 429 |
| PfeI | GAWTC | 2 cut(s) | 53, 104 |
| PkrI | GCNGC | 1 cut(s) | 919 |
| PmaCI | CACGTG | 1 cut(s) | 566 |
| PmlI | CACGTG | 1 cut(s) | 566 |
| Ppu21I | YACGTR | 1 cut(s) | 566 |
| PscI | ACATGT | 2 cut(s) | 39, 505 |
| PsiI | TTATAA | 2 cut(s) | 402, 447 |
| PspCI | CACGTG | 1 cut(s) | 566 |
| PspN4I | GGNNCC | 4 cut(s) | 479, 513, 622, 646 |
| PspPI | GGNCC | 1 cut(s) | 512 |
| PstI | CTGCAG | 1 cut(s) | 922 |
| RsaI | GTAC | 1 cut(s) | 314 |
| RsaNI | GTAC | 1 cut(s) | 313 |
| RseI | CAYNNNNRTG | 4 cut(s) | 389, 618, 878, 912 |
| SaqAI | TTAA | 3 cut(s) | 209, 695, 927 |
| SatI | GCNGC | 1 cut(s) | 918 |
| Sau3AI | GATC | 3 cut(s) | 45, 327, 734 |
| Sau96I | GGNCC | 1 cut(s) | 512 |
| SduI | GDGCHC | 3 cut(s) | 468, 607, 625 |
| SfaNI | GCATC | 2 cut(s) | 461, 904 |
| SfcI | CTRYAG | 1 cut(s) | 918 |
| SinI | GGWCC | 1 cut(s) | 512 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 389, 618, 878, 912 |
| SsiI | CCGC | 2 cut(s) | 475, 618 |
| SspI | AATATT | 2 cut(s) | 97, 319 |
| SspMI | CTAG | 1 cut(s) | 608 |
| StyI | CCWWGG | 1 cut(s) | 628 |
| TaiI | ACGT | 4 cut(s) | 310, 568, 586, 867 |
| TaqI | TCGA | 2 cut(s) | 44, 56 |
| TatI | WGTACW | 1 cut(s) | 312 |
| TfiI | GAWTC | 2 cut(s) | 53, 104 |
| Tru1I | TTAA | 3 cut(s) | 209, 695, 927 |
| Tru9I | TTAA | 3 cut(s) | 209, 695, 927 |
| TseFI | GTSAC | 2 cut(s) | 545, 566 |
| TseI | GCWGC | 1 cut(s) | 917 |
| Tsp45I | GTSAC | 2 cut(s) | 545, 566 |
| TspDTI | ATGAA | 2 cut(s) | 329, 567 |
| TspGWI | ACGGA | 1 cut(s) | 340 |
| VneI | GTGCAC | 1 cut(s) | 603 |
| VpaK11BI | GGWCC | 1 cut(s) | 512 |
| XceI | RCATGY | 2 cut(s) | 43, 509 |
| XspI | CTAG | 1 cut(s) | 608 |
| Zsp2I | ATGCAT | 1 cut(s) | 454 |