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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 402, 447 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 510 |
| AccB1I | GGYRCC | 1 cut(s) | 626 |
| AccBSI | CCGCTC | 2 cut(s) | 475, 557 |
| AciI | CCGC | 3 cut(s) | 475, 523, 557 |
| AclWI | GGATC | 1 cut(s) | 335 |
| AcuI | CTGAAG | 1 cut(s) | 792 |
| AcvI | CACGTG | 1 cut(s) | 566 |
| AcyI | GRCGYC | 1 cut(s) | 627 |
| AfaI | GTAC | 1 cut(s) | 707 |
| AfeI | AGCGCT | 1 cut(s) | 75 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 461, 462, 532, 596 |
| AflIII | ACRYGT | 1 cut(s) | 563 |
| AgsI | TTSAA | 8 cut(s) | 124, 131, 160, 173, 311, 408, 666, 766 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 7 cut(s) | 64, 244, 346, 368, 614, 662, 770 |
| AluI | AGCT | 7 cut(s) | 64, 244, 346, 368, 614, 662, 770 |
| Alw21I | GWGCWC | 2 cut(s) | 87, 786 |
| Alw26I | GTCTC | 1 cut(s) | 732 |
| Alw44I | GTGCAC | 1 cut(s) | 782 |
| AlwI | GGATC | 1 cut(s) | 335 |
| Aor51HI | AGCGCT | 1 cut(s) | 75 |
| AoxI | GGCC | 1 cut(s) | 410 |
| ApaLI | GTGCAC | 1 cut(s) | 782 |
| ApeKI | GCWGC | 1 cut(s) | 794 |
| AspA2I | CCTAGG | 1 cut(s) | 482 |
| AspLEI | GCGC | 4 cut(s) | 76, 147, 468, 629 |
| AspS9I | GGNCC | 2 cut(s) | 512, 685 |
| AsuHPI | GGTGA | 1 cut(s) | 742 |
| AvaII | GGWCC | 2 cut(s) | 512, 685 |
| AvrII | CCTAGG | 1 cut(s) | 482 |
| AxyI | CCTNAGG | 1 cut(s) | 689 |
| BaeGI | GKGCMC | 1 cut(s) | 786 |
| BanI | GGYRCC | 1 cut(s) | 626 |
| BauI | CACGAG | 3 cut(s) | 331, 389, 615 |
| BbrPI | CACGTG | 1 cut(s) | 566 |
| BbsI | GAAGAC | 1 cut(s) | 260 |
| Bbv12I | GWGCWC | 2 cut(s) | 87, 786 |
| BbvI | GCAGC | 1 cut(s) | 781 |
| BccI | CCATC | 1 cut(s) | 318 |
| BciVI | GTATCC | 1 cut(s) | 553 |
| BcoDI | GTCTC | 1 cut(s) | 732 |
| BfaI | CTAG | 3 cut(s) | 77, 483, 659 |
| BfmI | CTRYAG | 2 cut(s) | 363, 795 |
| BfoI | RGCGCY | 2 cut(s) | 77, 630 |
| BfuI | GTATCC | 1 cut(s) | 553 |
| BisI | GCNGC | 1 cut(s) | 795 |
| BlnI | CCTAGG | 1 cut(s) | 482 |
| BlsI | GCNGC | 1 cut(s) | 796 |
| Bme18I | GGWCC | 2 cut(s) | 512, 685 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| BmgT120I | GGNCC | 2 cut(s) | 512, 685 |
| BmiI | GGNNCC | 5 cut(s) | 479, 513, 607, 628, 686 |
| BmsI | GCATC | 2 cut(s) | 43, 781 |
| BpiI | GAAGAC | 1 cut(s) | 260 |
| BsaAI | YACGTR | 1 cut(s) | 566 |
| BsaHI | GRCGYC | 1 cut(s) | 627 |
| BsaJI | CCNNGG | 5 cut(s) | 115, 482, 595, 630, 753 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 26, 56, 562, 592 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 461, 462, 532, 596 |
| Bse21I | CCTNAGG | 1 cut(s) | 689 |
| Bse3DI | GCAATG | 1 cut(s) | 100 |
| BseDI | CCNNGG | 5 cut(s) | 115, 482, 595, 630, 753 |
| BseGI | GGATG | 3 cut(s) | 58, 329, 796 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 461, 462, 532, 596 |
| BseMI | GCAATG | 1 cut(s) | 100 |
| BseMII | CTCAG | 3 cut(s) | 40, 360, 680 |
| BseRI | GAGGAG | 2 cut(s) | 101, 588 |
| BseSI | GKGCMC | 1 cut(s) | 786 |
| BseXI | GCAGC | 1 cut(s) | 781 |
| BshFI | GGCC | 1 cut(s) | 412 |
| BshNI | GGYRCC | 1 cut(s) | 626 |
| BsiHKAI | GWGCWC | 2 cut(s) | 87, 786 |
| BslFI | GGGAC | 3 cut(s) | 507, 516, 698 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 461, 462, 532, 596 |
| BsmAI | GTCTC | 1 cut(s) | 732 |
| BsmBI | CGTCTC | 1 cut(s) | 732 |
| BsmFI | GGGAC | 3 cut(s) | 507, 516, 698 |
| BsmI | GAATGC | 1 cut(s) | 429 |
| BsnI | GGCC | 1 cut(s) | 412 |
| Bsp1286I | GDGCHC | 2 cut(s) | 87, 786 |
| Bsp143I | GATC | 2 cut(s) | 45, 327 |
| Bsp19I | CCATGG | 2 cut(s) | 630, 753 |
| BspACI | CCGC | 3 cut(s) | 475, 523, 557 |
| BspANI | GGCC | 1 cut(s) | 412 |
| BspCNI | CTCAG | 3 cut(s) | 39, 361, 681 |
| BspLI | GGNNCC | 5 cut(s) | 479, 513, 607, 628, 686 |
| BspMAI | CTGCAG | 1 cut(s) | 799 |
| BspPI | GGATC | 1 cut(s) | 335 |
| BspQI | GCTCTTC | 2 cut(s) | 75, 195 |
| BspT107I | GGYRCC | 1 cut(s) | 626 |
| BsrBI | CCGCTC | 2 cut(s) | 475, 557 |
| BsrDI | GCAATG | 1 cut(s) | 100 |
| BssECI | CCNNGG | 5 cut(s) | 115, 482, 595, 630, 753 |
| BssMI | GATC | 2 cut(s) | 45, 327 |
| BssNI | GRCGYC | 1 cut(s) | 627 |
| BssSI | CACGAG | 3 cut(s) | 331, 389, 615 |
| BssT1I | CCWWGG | 4 cut(s) | 115, 482, 630, 753 |
| Bst2BI | CACGAG | 3 cut(s) | 331, 389, 615 |
| Bst6I | CTCTTC | 2 cut(s) | 75, 195 |
| BstACI | GRCGYC | 1 cut(s) | 627 |
| BstBAI | YACGTR | 1 cut(s) | 566 |
| BstC8I | GCNNGC | 2 cut(s) | 649, 653 |
| BstDEI | CTNAG | 4 cut(s) | 26, 369, 423, 689 |
| BstDSI | CCRYGG | 3 cut(s) | 595, 630, 753 |
| BstF5I | GGATG | 3 cut(s) | 58, 329, 796 |
| BstH2I | RGCGCY | 2 cut(s) | 77, 630 |
| BstHHI | GCGC | 4 cut(s) | 76, 147, 468, 629 |
| BstKTI | GATC | 2 cut(s) | 48, 330 |
| BstMAI | GTCTC | 1 cut(s) | 732 |
| BstMBI | GATC | 2 cut(s) | 45, 327 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 82, 472, 648 |
| BstSFI | CTRYAG | 2 cut(s) | 363, 795 |
| BstSLI | GKGCMC | 1 cut(s) | 786 |
| BstV1I | GCAGC | 1 cut(s) | 781 |
| BstV2I | GAAGAC | 1 cut(s) | 260 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 551 |
| Bsu36I | CCTNAGG | 1 cut(s) | 689 |
| BsuI | GTATCC | 1 cut(s) | 553 |
| BsuRI | GGCC | 1 cut(s) | 412 |
| BtgI | CCRYGG | 3 cut(s) | 595, 630, 753 |
| BtsCI | GGATG | 3 cut(s) | 58, 329, 796 |
| Cac8I | GCNNGC | 2 cut(s) | 649, 653 |
| CfoI | GCGC | 4 cut(s) | 76, 147, 468, 629 |
| Cfr13I | GGNCC | 2 cut(s) | 512, 685 |
| Csp6I | GTAC | 1 cut(s) | 706 |
| CviAII | CATG | 5 cut(s) | 205, 377, 497, 631, 754 |
| CviQI | GTAC | 1 cut(s) | 706 |
| DdeI | CTNAG | 4 cut(s) | 26, 369, 423, 689 |
| DinI | GGCGCC | 1 cut(s) | 628 |
| DpnI | GATC | 2 cut(s) | 47, 329 |
| DpnII | GATC | 2 cut(s) | 45, 327 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 510 |
| DriI | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 510 |
| Eam1104I | CTCTTC | 2 cut(s) | 75, 195 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| EarI | CTCTTC | 2 cut(s) | 75, 195 |
| Eco130I | CCWWGG | 4 cut(s) | 115, 482, 630, 753 |
| Eco147I | AGGCCT | 1 cut(s) | 412 |
| Eco47I | GGWCC | 2 cut(s) | 512, 685 |
| Eco47III | AGCGCT | 1 cut(s) | 75 |
| Eco57I | CTGAAG | 1 cut(s) | 792 |
| Eco72I | CACGTG | 1 cut(s) | 566 |
| Eco81I | CCTNAGG | 1 cut(s) | 689 |
| EcoO109I | RGGNCCY | 1 cut(s) | 685 |
| EcoT14I | CCWWGG | 4 cut(s) | 115, 482, 630, 753 |
| EgeI | GGCGCC | 1 cut(s) | 628 |
| EheI | GGCGCC | 1 cut(s) | 628 |
| ErhI | CCWWGG | 4 cut(s) | 115, 482, 630, 753 |
| Esp3I | CGTCTC | 1 cut(s) | 732 |
| FaeI | CATG | 5 cut(s) | 208, 380, 500, 634, 757 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 693, 725 |
| FaqI | GGGAC | 3 cut(s) | 507, 516, 698 |
| FatI | CATG | 5 cut(s) | 204, 376, 496, 630, 753 |
| FauNDI | CATATG | 2 cut(s) | 12, 507 |
| Fnu4HI | GCNGC | 1 cut(s) | 795 |
| FokI | GGATG | 3 cut(s) | 65, 336, 803 |
| Fsp4HI | GCNGC | 1 cut(s) | 795 |
| FspBI | CTAG | 3 cut(s) | 77, 483, 659 |
| GlaI | GCGC | 4 cut(s) | 75, 146, 467, 628 |
| GluI | GCNGC | 1 cut(s) | 795 |
| HaeII | RGCGCY | 2 cut(s) | 77, 630 |
| HaeIII | GGCC | 1 cut(s) | 412 |
| HhaI | GCGC | 4 cut(s) | 76, 147, 468, 629 |
| Hin1I | GRCGYC | 1 cut(s) | 627 |
| Hin1II | CATG | 5 cut(s) | 208, 380, 500, 634, 757 |
| Hin6I | GCGC | 4 cut(s) | 74, 145, 466, 627 |
| HinP1I | GCGC | 4 cut(s) | 74, 145, 466, 627 |
| HinfI | GANTC | 3 cut(s) | 104, 213, 256 |
| HphI | GGTGA | 1 cut(s) | 742 |
| Hpy166II | GTNNAC | 3 cut(s) | 221, 706, 784 |
| Hpy188I | TCNGA | 2 cut(s) | 29, 184 |
| Hpy188III | TCNNGA | 4 cut(s) | 331, 391, 533, 666 |
| Hpy8I | GTNNAC | 3 cut(s) | 221, 706, 784 |
| HpyAV | CCTTC | 3 cut(s) | 118, 277, 530 |
| HpyCH4IV | ACGT | 2 cut(s) | 565, 741 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 56, 452, 713, 784, 797 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 82, 472, 648 |
| HpyF3I | CTNAG | 4 cut(s) | 26, 369, 423, 689 |
| HpySE526I | ACGT | 2 cut(s) | 565, 741 |
| Hsp92I | GRCGYC | 1 cut(s) | 627 |
| Hsp92II | CATG | 5 cut(s) | 208, 380, 500, 634, 757 |
| HspAI | GCGC | 4 cut(s) | 74, 145, 466, 627 |
| KasI | GGCGCC | 1 cut(s) | 626 |
| Kzo9I | GATC | 2 cut(s) | 45, 327 |
| LguI | GCTCTTC | 2 cut(s) | 75, 195 |
| LmnI | GCTCC | 4 cut(s) | 472, 554, 605, 694 |
| LpnPI | CCDG | 6 cut(s) | 240, 306, 518, 658, 667, 701 |
| Lsp1109I | GCAGC | 1 cut(s) | 781 |
| LweI | GCATC | 2 cut(s) | 43, 781 |
| MaeI | CTAG | 3 cut(s) | 77, 483, 659 |
| MaeII | ACGT | 2 cut(s) | 565, 741 |
| MaeIII | GTNAC | 1 cut(s) | 229 |
| MalI | GATC | 2 cut(s) | 47, 329 |
| MbiI | CCGCTC | 2 cut(s) | 475, 557 |
| MboI | GATC | 2 cut(s) | 45, 327 |
| MboII | GAAGA | 8 cut(s) | 92, 182, 265, 728, 731, 734, 737, 785 |
| MhlI | GDGCHC | 2 cut(s) | 87, 786 |
| MluCI | AATT | 5 cut(s) | 178, 246, 397, 403, 442 |
| Mly113I | GGCGCC | 1 cut(s) | 627 |
| MlyI | GAGTC | 1 cut(s) | 250 |
| MnlI | CCTC | 9 cut(s) | 119, 122, 178, 387, 493, 566, 569, 684, 751 |
| MseI | TTAA | 1 cut(s) | 744 |
| MslI | CAYNNNNRTG | 2 cut(s) | 389, 789 |
| Mva1269I | GAATGC | 1 cut(s) | 429 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 82, 472, 648 |
| NarI | GGCGCC | 1 cut(s) | 627 |
| NcoI | CCATGG | 2 cut(s) | 630, 753 |
| NdeI | CATATG | 2 cut(s) | 12, 507 |
| NdeII | GATC | 2 cut(s) | 45, 327 |
| NlaIII | CATG | 5 cut(s) | 208, 380, 500, 634, 757 |
| NlaIV | GGNNCC | 5 cut(s) | 479, 513, 607, 628, 686 |
| NmuCI | GTSAC | 1 cut(s) | 229 |
| PceI | AGGCCT | 1 cut(s) | 412 |
| PciSI | GCTCTTC | 2 cut(s) | 75, 195 |
| PctI | GAATGC | 1 cut(s) | 429 |
| PfeI | GAWTC | 2 cut(s) | 104, 213 |
| PkrI | GCNGC | 1 cut(s) | 796 |
| PleI | GAGTC | 1 cut(s) | 250 |
| PluTI | GGCGCC | 1 cut(s) | 630 |
| PmaCI | CACGTG | 1 cut(s) | 566 |
| PmlI | CACGTG | 1 cut(s) | 566 |
| PpsI | GAGTC | 1 cut(s) | 250 |
| Ppu21I | YACGTR | 1 cut(s) | 566 |
| PpuMI | RGGWCCY | 1 cut(s) | 685 |
| PsiI | TTATAA | 2 cut(s) | 402, 447 |
| Psp5II | RGGWCCY | 1 cut(s) | 685 |
| PspCI | CACGTG | 1 cut(s) | 566 |
| PspN4I | GGNNCC | 5 cut(s) | 479, 513, 607, 628, 686 |
| PspPI | GGNCC | 2 cut(s) | 512, 685 |
| PspPPI | RGGWCCY | 1 cut(s) | 685 |
| PstI | CTGCAG | 1 cut(s) | 799 |
| RsaI | GTAC | 1 cut(s) | 707 |
| RsaNI | GTAC | 1 cut(s) | 706 |
| RseI | CAYNNNNRTG | 2 cut(s) | 389, 789 |
| SapI | GCTCTTC | 2 cut(s) | 75, 195 |
| SaqAI | TTAA | 1 cut(s) | 744 |
| SatI | GCNGC | 1 cut(s) | 795 |
| Sau3AI | GATC | 2 cut(s) | 45, 327 |
| Sau96I | GGNCC | 2 cut(s) | 512, 685 |
| SchI | GAGTC | 1 cut(s) | 250 |
| SduI | GDGCHC | 2 cut(s) | 87, 786 |
| SfaNI | GCATC | 2 cut(s) | 43, 781 |
| SfcI | CTRYAG | 2 cut(s) | 363, 795 |
| SfoI | GGCGCC | 1 cut(s) | 628 |
| SinI | GGWCC | 2 cut(s) | 512, 685 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 389, 789 |
| Sse9I | AATT | 5 cut(s) | 178, 246, 397, 403, 442 |
| SseBI | AGGCCT | 1 cut(s) | 412 |
| SsiI | CCGC | 3 cut(s) | 475, 523, 557 |
| SspDI | GGCGCC | 1 cut(s) | 626 |
| SspMI | CTAG | 3 cut(s) | 77, 483, 659 |
| StuI | AGGCCT | 1 cut(s) | 412 |
| StyI | CCWWGG | 4 cut(s) | 115, 482, 630, 753 |
| TaiI | ACGT | 2 cut(s) | 568, 744 |
| TaqI | TCGA | 1 cut(s) | 44 |
| TasI | AATT | 5 cut(s) | 178, 246, 397, 403, 442 |
| TfiI | GAWTC | 2 cut(s) | 104, 213 |
| Tru1I | TTAA | 1 cut(s) | 744 |
| Tru9I | TTAA | 1 cut(s) | 744 |
| TseFI | GTSAC | 1 cut(s) | 229 |
| TseI | GCWGC | 1 cut(s) | 794 |
| Tsp45I | GTSAC | 1 cut(s) | 229 |
| TspDTI | ATGAA | 3 cut(s) | 329, 422, 792 |
| TspGWI | ACGGA | 1 cut(s) | 584 |
| VneI | GTGCAC | 1 cut(s) | 782 |
| VpaK11BI | GGWCC | 2 cut(s) | 512, 685 |
| XmaJI | CCTAGG | 1 cut(s) | 482 |
| XspI | CTAG | 3 cut(s) | 77, 483, 659 |