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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 800 |
| AccI | GTMKAC | 1 cut(s) | 671 |
| AciI | CCGC | 3 cut(s) | 79, 319, 942 |
| AclWI | GGATC | 4 cut(s) | 509, 579, 683, 1001 |
| AcoI | YGGCCR | 1 cut(s) | 787 |
| AcsI | RAATTY | 1 cut(s) | 386 |
| AdeI | CACNNNGTG | 1 cut(s) | 982 |
| AgsI | TTSAA | 2 cut(s) | 334, 838 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 246, 278 |
| AluBI | AGCT | 5 cut(s) | 164, 520, 530, 923, 974 |
| AluI | AGCT | 5 cut(s) | 164, 520, 530, 923, 974 |
| Alw21I | GWGCWC | 2 cut(s) | 522, 925 |
| Alw26I | GTCTC | 2 cut(s) | 250, 454 |
| AlwI | GGATC | 4 cut(s) | 509, 579, 683, 1001 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 452 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 787 |
| ApeKI | GCWGC | 1 cut(s) | 137 |
| ApoI | RAATTY | 1 cut(s) | 386 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 363, 603 |
| AspLEI | GCGC | 1 cut(s) | 844 |
| AsuHPI | GGTGA | 1 cut(s) | 931 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BaeGI | GKGCMC | 1 cut(s) | 910 |
| BalI | TGGCCA | 1 cut(s) | 789 |
| BanI | GGYRCC | 1 cut(s) | 800 |
| BanII | GRGCYC | 2 cut(s) | 522, 925 |
| BauI | CACGAG | 1 cut(s) | 924 |
| BbsI | GAAGAC | 1 cut(s) | 231 |
| Bbv12I | GWGCWC | 2 cut(s) | 522, 925 |
| BbvI | GCAGC | 1 cut(s) | 149 |
| BccI | CCATC | 3 cut(s) | 300, 454, 828 |
| BcoDI | GTCTC | 2 cut(s) | 250, 454 |
| BfaI | CTAG | 2 cut(s) | 126, 296 |
| BfmI | CTRYAG | 1 cut(s) | 96 |
| BfoI | RGCGCY | 1 cut(s) | 845 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 146 |
| BisI | GCNGC | 1 cut(s) | 138 |
| BlsI | GCNGC | 1 cut(s) | 139 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmiI | GGNNCC | 2 cut(s) | 743, 802 |
| BmrI | ACTGGG | 1 cut(s) | 440 |
| BmsI | GCATC | 2 cut(s) | 94, 400 |
| BmuI | ACTGGG | 1 cut(s) | 440 |
| BpiI | GAAGAC | 1 cut(s) | 231 |
| BpmI | CTGGAG | 1 cut(s) | 185 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| BsaI | GGTCTC | 1 cut(s) | 250 |
| BsaJI | CCNNGG | 1 cut(s) | 588 |
| Bse1I | ACTGG | 3 cut(s) | 49, 202, 446 |
| BseDI | CCNNGG | 1 cut(s) | 588 |
| BseGI | GGATG | 2 cut(s) | 168, 196 |
| BseMII | CTCAG | 1 cut(s) | 888 |
| BseNI | ACTGG | 3 cut(s) | 49, 202, 446 |
| BseSI | GKGCMC | 1 cut(s) | 910 |
| BseXI | GCAGC | 1 cut(s) | 149 |
| BshFI | GGCC | 1 cut(s) | 789 |
| BshNI | GGYRCC | 1 cut(s) | 800 |
| BsiHKAI | GWGCWC | 2 cut(s) | 522, 925 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsmAI | GTCTC | 2 cut(s) | 250, 454 |
| BsnI | GGCC | 1 cut(s) | 789 |
| Bso31I | GGTCTC | 1 cut(s) | 250 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 3 cut(s) | 522, 910, 925 |
| Bsp143I | GATC | 5 cut(s) | 402, 501, 584, 688, 1006 |
| BspACI | CCGC | 3 cut(s) | 79, 319, 942 |
| BspANI | GGCC | 1 cut(s) | 789 |
| BspCNI | CTCAG | 1 cut(s) | 889 |
| BspHI | TCATGA | 1 cut(s) | 514 |
| BspLI | GGNNCC | 2 cut(s) | 743, 802 |
| BspPI | GGATC | 4 cut(s) | 509, 579, 683, 1001 |
| BspT107I | GGYRCC | 1 cut(s) | 800 |
| BspTNI | GGTCTC | 1 cut(s) | 250 |
| BsrI | ACTGG | 3 cut(s) | 49, 202, 446 |
| BssECI | CCNNGG | 1 cut(s) | 588 |
| BssMI | GATC | 5 cut(s) | 402, 501, 584, 688, 1006 |
| BssNAI | GTATAC | 1 cut(s) | 672 |
| BssSI | CACGAG | 1 cut(s) | 924 |
| Bst1107I | GTATAC | 1 cut(s) | 672 |
| Bst2BI | CACGAG | 1 cut(s) | 924 |
| Bst6I | CTCTTC | 1 cut(s) | 742 |
| BstC8I | GCNNGC | 1 cut(s) | 83 |
| BstDEI | CTNAG | 6 cut(s) | 142, 468, 633, 665, 813, 897 |
| BstDSI | CCRYGG | 1 cut(s) | 588 |
| BstF5I | GGATG | 2 cut(s) | 168, 196 |
| BstH2I | RGCGCY | 1 cut(s) | 845 |
| BstHHI | GCGC | 1 cut(s) | 844 |
| BstKTI | GATC | 5 cut(s) | 405, 504, 587, 691, 1009 |
| BstMAI | GTCTC | 2 cut(s) | 250, 454 |
| BstMBI | GATC | 5 cut(s) | 402, 501, 584, 688, 1006 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 146, 155, 649, 839, 950, 971 |
| BstSFI | CTRYAG | 1 cut(s) | 96 |
| BstSLI | GKGCMC | 1 cut(s) | 910 |
| BstV1I | GCAGC | 1 cut(s) | 149 |
| BstV2I | GAAGAC | 1 cut(s) | 231 |
| BstX2I | RGATCY | 1 cut(s) | 584 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 797 |
| BstYI | RGATCY | 1 cut(s) | 584 |
| BstZ17I | GTATAC | 1 cut(s) | 672 |
| BsuRI | GGCC | 1 cut(s) | 789 |
| BtgI | CCRYGG | 1 cut(s) | 588 |
| BtgZI | GCGATG | 1 cut(s) | 428 |
| BtsCI | GGATG | 2 cut(s) | 168, 196 |
| Cac8I | GCNNGC | 1 cut(s) | 83 |
| CaiI | CAGNNNCTG | 1 cut(s) | 452 |
| CciI | TCATGA | 1 cut(s) | 514 |
| CfoI | GCGC | 1 cut(s) | 844 |
| CseI | GACGC | 1 cut(s) | 839 |
| CviAII | CATG | 3 cut(s) | 515, 551, 791 |
| DdeI | CTNAG | 6 cut(s) | 142, 468, 633, 665, 813, 897 |
| DpnI | GATC | 5 cut(s) | 404, 503, 586, 690, 1008 |
| DpnII | GATC | 5 cut(s) | 402, 501, 584, 688, 1006 |
| DraIII | CACNNNGTG | 1 cut(s) | 982 |
| EaeI | YGGCCR | 1 cut(s) | 787 |
| Eam1104I | CTCTTC | 1 cut(s) | 742 |
| EarI | CTCTTC | 1 cut(s) | 742 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 2 cut(s) | 520, 923 |
| Eco24I | GRGCYC | 2 cut(s) | 522, 925 |
| Eco31I | GGTCTC | 1 cut(s) | 250 |
| Eco32I | GATATC | 2 cut(s) | 56, 76 |
| Eco53kI | GAGCTC | 2 cut(s) | 520, 923 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 2 cut(s) | 520, 923 |
| EcoRI | GAATTC | 1 cut(s) | 386 |
| EcoRV | GATATC | 2 cut(s) | 56, 76 |
| EcoT38I | GRGCYC | 2 cut(s) | 522, 925 |
| FaeI | CATG | 3 cut(s) | 518, 554, 794 |
| FatI | CATG | 3 cut(s) | 514, 550, 790 |
| FauNDI | CATATG | 1 cut(s) | 186 |
| FblI | GTMKAC | 1 cut(s) | 671 |
| Fnu4HI | GCNGC | 1 cut(s) | 138 |
| FokI | GGATG | 2 cut(s) | 155, 203 |
| FriOI | GRGCYC | 2 cut(s) | 522, 925 |
| Fsp4HI | GCNGC | 1 cut(s) | 138 |
| FspBI | CTAG | 2 cut(s) | 126, 296 |
| GlaI | GCGC | 1 cut(s) | 843 |
| GluI | GCNGC | 1 cut(s) | 138 |
| GsuI | CTGGAG | 1 cut(s) | 185 |
| HaeII | RGCGCY | 1 cut(s) | 845 |
| HaeIII | GGCC | 1 cut(s) | 789 |
| HgaI | GACGC | 1 cut(s) | 839 |
| HhaI | GCGC | 1 cut(s) | 844 |
| Hin1II | CATG | 3 cut(s) | 518, 554, 794 |
| Hin6I | GCGC | 1 cut(s) | 842 |
| HinP1I | GCGC | 1 cut(s) | 842 |
| HinfI | GANTC | 5 cut(s) | 102, 115, 178, 194, 611 |
| HphI | GGTGA | 1 cut(s) | 931 |
| Hpy166II | GTNNAC | 2 cut(s) | 672, 755 |
| Hpy188I | TCNGA | 2 cut(s) | 358, 898 |
| Hpy8I | GTNNAC | 2 cut(s) | 672, 755 |
| HpyAV | CCTTC | 3 cut(s) | 228, 451, 707 |
| HpyCH4IV | ACGT | 2 cut(s) | 270, 757 |
| HpyCH4V | TGCA | 2 cut(s) | 455, 494 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 146, 155, 649, 839, 950, 971 |
| HpyF3I | CTNAG | 6 cut(s) | 142, 468, 633, 665, 813, 897 |
| HpySE526I | ACGT | 2 cut(s) | 270, 757 |
| Hsp92II | CATG | 3 cut(s) | 518, 554, 794 |
| HspAI | GCGC | 1 cut(s) | 842 |
| Kzo9I | GATC | 5 cut(s) | 402, 501, 584, 688, 1006 |
| LmnI | GCTCC | 3 cut(s) | 34, 204, 527 |
| LpnPI | CCDG | 9 cut(s) | 23, 30, 36, 95, 215, 244, 459, 663, 771 |
| Lsp1109I | GCAGC | 1 cut(s) | 149 |
| LweI | GCATC | 2 cut(s) | 94, 400 |
| MaeI | CTAG | 2 cut(s) | 126, 296 |
| MaeII | ACGT | 2 cut(s) | 270, 757 |
| MaeIII | GTNAC | 3 cut(s) | 5, 275, 716 |
| MalI | GATC | 5 cut(s) | 404, 503, 586, 690, 1008 |
| MboI | GATC | 5 cut(s) | 402, 501, 584, 688, 1006 |
| MboII | GAAGA | 6 cut(s) | 233, 236, 580, 759, 941, 1013 |
| MflI | RGATCY | 1 cut(s) | 584 |
| MhlI | GDGCHC | 3 cut(s) | 522, 910, 925 |
| MlsI | TGGCCA | 1 cut(s) | 789 |
| MluCI | AATT | 4 cut(s) | 17, 386, 577, 616 |
| MluNI | TGGCCA | 1 cut(s) | 789 |
| MlyI | GAGTC | 1 cut(s) | 172 |
| Mox20I | TGGCCA | 1 cut(s) | 789 |
| MroXI | GAANNNNTTC | 2 cut(s) | 363, 603 |
| MscI | TGGCCA | 1 cut(s) | 789 |
| MseI | TTAA | 2 cut(s) | 372, 380 |
| MslI | CAYNNNNRTG | 4 cut(s) | 173, 189, 795, 825 |
| Msp20I | TGGCCA | 1 cut(s) | 789 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 146, 155, 649, 839, 950, 971 |
| NdeI | CATATG | 1 cut(s) | 186 |
| NdeII | GATC | 5 cut(s) | 402, 501, 584, 688, 1006 |
| NlaIII | CATG | 3 cut(s) | 518, 554, 794 |
| NlaIV | GGNNCC | 2 cut(s) | 743, 802 |
| NmuCI | GTSAC | 1 cut(s) | 275 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 514 |
| PdmI | GAANNNNTTC | 2 cut(s) | 363, 603 |
| PfeI | GAWTC | 4 cut(s) | 102, 115, 194, 611 |
| PkrI | GCNGC | 1 cut(s) | 139 |
| PleI | GAGTC | 1 cut(s) | 172 |
| PpsI | GAGTC | 1 cut(s) | 172 |
| Psp124BI | GAGCTC | 2 cut(s) | 522, 925 |
| PspN4I | GGNNCC | 2 cut(s) | 743, 802 |
| PstNI | CAGNNNCTG | 1 cut(s) | 452 |
| PsuI | RGATCY | 1 cut(s) | 584 |
| RseI | CAYNNNNRTG | 4 cut(s) | 173, 189, 795, 825 |
| SacI | GAGCTC | 2 cut(s) | 522, 925 |
| SaqAI | TTAA | 2 cut(s) | 372, 380 |
| SatI | GCNGC | 1 cut(s) | 138 |
| Sau3AI | GATC | 5 cut(s) | 402, 501, 584, 688, 1006 |
| SchI | GAGTC | 1 cut(s) | 172 |
| SduI | GDGCHC | 3 cut(s) | 522, 910, 925 |
| SfaNI | GCATC | 2 cut(s) | 94, 400 |
| SfcI | CTRYAG | 1 cut(s) | 96 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 173, 189, 795, 825 |
| SmlI | CTYRAG | 2 cut(s) | 89, 119 |
| SmoI | CTYRAG | 2 cut(s) | 89, 119 |
| Sse9I | AATT | 4 cut(s) | 17, 386, 577, 616 |
| SsiI | CCGC | 3 cut(s) | 79, 319, 942 |
| SspMI | CTAG | 2 cut(s) | 126, 296 |
| SstI | GAGCTC | 2 cut(s) | 522, 925 |
| TaiI | ACGT | 2 cut(s) | 273, 760 |
| TaqI | TCGA | 6 cut(s) | 120, 252, 478, 581, 861, 883 |
| TasI | AATT | 4 cut(s) | 17, 386, 577, 616 |
| TfiI | GAWTC | 4 cut(s) | 102, 115, 194, 611 |
| Tru1I | TTAA | 2 cut(s) | 372, 380 |
| Tru9I | TTAA | 2 cut(s) | 372, 380 |
| TseFI | GTSAC | 1 cut(s) | 275 |
| TseI | GCWGC | 1 cut(s) | 137 |
| Tsp45I | GTSAC | 1 cut(s) | 275 |
| TspDTI | ATGAA | 4 cut(s) | 230, 234, 503, 548 |
| TspGWI | ACGGA | 4 cut(s) | 263, 514, 577, 754 |
| XapI | RAATTY | 1 cut(s) | 386 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmiI | GTMKAC | 1 cut(s) | 671 |
| XmnI | GAANNNNTTC | 2 cut(s) | 363, 603 |
| XspI | CTAG | 2 cut(s) | 126, 296 |