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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 582, 627 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 693 |
| AccB1I | GGYRCC | 2 cut(s) | 118, 827 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 797 |
| AccBSI | CCGCTC | 2 cut(s) | 170, 658 |
| AciI | CCGC | 3 cut(s) | 168, 658, 807 |
| AclWI | GGATC | 1 cut(s) | 925 |
| AcuI | CTGAAG | 1 cut(s) | 366 |
| AcvI | CACGTG | 1 cut(s) | 749 |
| AcyI | GRCGYC | 2 cut(s) | 187, 828 |
| AfaI | GTAC | 2 cut(s) | 148, 218 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 390, 644, 645, 715, 797, 842 |
| AflIII | ACRYGT | 2 cut(s) | 746, 900 |
| AgsI | TTSAA | 8 cut(s) | 7, 93, 304, 311, 340, 588, 614, 937 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 407 |
| AjiI | CACGTC | 1 cut(s) | 797 |
| AjnI | CCWGG | 1 cut(s) | 790 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 252, 284 |
| AleI | CACNNNNGTG | 1 cut(s) | 855 |
| AluBI | AGCT | 7 cut(s) | 16, 350, 368, 424, 526, 548, 951 |
| AluI | AGCT | 7 cut(s) | 16, 350, 368, 424, 526, 548, 951 |
| Alw26I | GTCTC | 2 cut(s) | 178, 460 |
| AlwI | GGATC | 1 cut(s) | 925 |
| AoxI | GGCC | 1 cut(s) | 778 |
| AseI | ATTAAT | 1 cut(s) | 531 |
| AspLEI | GCGC | 3 cut(s) | 256, 651, 830 |
| AspS9I | GGNCC | 1 cut(s) | 99 |
| AvaII | GGWCC | 1 cut(s) | 99 |
| BanI | GGYRCC | 2 cut(s) | 118, 827 |
| BanII | GRGCYC | 1 cut(s) | 790 |
| BauI | CACGAG | 1 cut(s) | 511 |
| BbrPI | CACGTG | 1 cut(s) | 749 |
| BceAI | ACGGC | 1 cut(s) | 165 |
| BciT130I | CCWGG | 1 cut(s) | 792 |
| BcoDI | GTCTC | 2 cut(s) | 178, 460 |
| BfaI | CTAG | 4 cut(s) | 237, 257, 501, 840 |
| BfmI | CTRYAG | 1 cut(s) | 543 |
| BfoI | RGCGCY | 1 cut(s) | 831 |
| BisI | GCNGC | 1 cut(s) | 807 |
| BlsI | GCNGC | 1 cut(s) | 808 |
| Bme1390I | CCNGG | 1 cut(s) | 792 |
| Bme18I | GGWCC | 1 cut(s) | 99 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 407 |
| BmgBI | CACGTC | 1 cut(s) | 797 |
| BmgT120I | GGNCC | 1 cut(s) | 99 |
| BmiI | GGNNCC | 7 cut(s) | 100, 101, 120, 662, 789, 805, 829 |
| BmrFI | CCNGG | 1 cut(s) | 792 |
| BmsI | GCATC | 1 cut(s) | 223 |
| BoxI | GACNNNNGTC | 1 cut(s) | 903 |
| BpmI | CTGGAG | 1 cut(s) | 774 |
| BsaAI | YACGTR | 1 cut(s) | 749 |
| BsaHI | GRCGYC | 2 cut(s) | 187, 828 |
| BsaJI | CCNNGG | 2 cut(s) | 781, 811 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 390, 644, 645, 715, 797, 842 |
| Bse1I | ACTGG | 1 cut(s) | 46 |
| Bse3DI | GCAATG | 1 cut(s) | 280 |
| BseBI | CCWGG | 1 cut(s) | 792 |
| BseDI | CCNNGG | 2 cut(s) | 781, 811 |
| BseGI | GGATG | 2 cut(s) | 76, 238 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 390, 644, 645, 715, 797, 842 |
| BseMI | GCAATG | 1 cut(s) | 280 |
| BseMII | CTCAG | 1 cut(s) | 471 |
| BseNI | ACTGG | 1 cut(s) | 46 |
| BseRI | GAGGAG | 2 cut(s) | 281, 789 |
| BshFI | GGCC | 1 cut(s) | 780 |
| BshNI | GGYRCC | 2 cut(s) | 118, 827 |
| BsiWI | CGTACG | 1 cut(s) | 146 |
| BslFI | GGGAC | 4 cut(s) | 112, 690, 858, 899 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 390, 644, 645, 715, 797, 842 |
| BsmAI | GTCTC | 2 cut(s) | 178, 460 |
| BsmBI | CGTCTC | 2 cut(s) | 178, 460 |
| BsmFI | GGGAC | 4 cut(s) | 112, 690, 858, 899 |
| BsnI | GGCC | 1 cut(s) | 780 |
| Bsp1286I | GDGCHC | 1 cut(s) | 790 |
| Bsp143I | GATC | 1 cut(s) | 917 |
| Bsp19I | CCATGG | 1 cut(s) | 781 |
| BspACI | CCGC | 3 cut(s) | 168, 658, 807 |
| BspANI | GGCC | 1 cut(s) | 780 |
| BspCNI | CTCAG | 1 cut(s) | 470 |
| BspLI | GGNNCC | 7 cut(s) | 100, 101, 120, 662, 789, 805, 829 |
| BspPI | GGATC | 1 cut(s) | 925 |
| BspQI | GCTCTTC | 1 cut(s) | 255 |
| BspT107I | GGYRCC | 2 cut(s) | 118, 827 |
| BsrBI | CCGCTC | 2 cut(s) | 170, 658 |
| BsrDI | GCAATG | 1 cut(s) | 280 |
| BsrI | ACTGG | 1 cut(s) | 46 |
| BssECI | CCNNGG | 2 cut(s) | 781, 811 |
| BssMI | GATC | 1 cut(s) | 917 |
| BssNI | GRCGYC | 2 cut(s) | 187, 828 |
| BssSI | CACGAG | 1 cut(s) | 511 |
| BssT1I | CCWWGG | 2 cut(s) | 781, 811 |
| Bst2BI | CACGAG | 1 cut(s) | 511 |
| Bst2UI | CCWGG | 1 cut(s) | 792 |
| Bst6I | CTCTTC | 1 cut(s) | 255 |
| BstACI | GRCGYC | 2 cut(s) | 187, 828 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 866 |
| BstBAI | YACGTR | 1 cut(s) | 749 |
| BstDEI | CTNAG | 2 cut(s) | 457, 603 |
| BstDSI | CCRYGG | 1 cut(s) | 781 |
| BstF5I | GGATG | 2 cut(s) | 76, 238 |
| BstH2I | RGCGCY | 1 cut(s) | 831 |
| BstHHI | GCGC | 3 cut(s) | 256, 651, 830 |
| BstKTI | GATC | 1 cut(s) | 920 |
| BstMAI | GTCTC | 2 cut(s) | 178, 460 |
| BstMBI | GATC | 1 cut(s) | 917 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 262, 655, 866 |
| BstNI | CCWGG | 1 cut(s) | 792 |
| BstNSI | RCATGY | 1 cut(s) | 904 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 903 |
| BstSCI | CCNGG | 1 cut(s) | 790 |
| BstSFI | CTRYAG | 1 cut(s) | 543 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 818 |
| BsuRI | GGCC | 1 cut(s) | 780 |
| BtgI | CCRYGG | 1 cut(s) | 781 |
| BtrI | CACGTC | 1 cut(s) | 797 |
| BtsCI | GGATG | 2 cut(s) | 76, 238 |
| CfoI | GCGC | 3 cut(s) | 256, 651, 830 |
| Cfr13I | GGNCC | 1 cut(s) | 99 |
| CseI | GACGC | 1 cut(s) | 195 |
| Csp6I | GTAC | 2 cut(s) | 147, 217 |
| CviAII | CATG | 7 cut(s) | 193, 220, 385, 557, 759, 782, 901 |
| CviQI | GTAC | 2 cut(s) | 147, 217 |
| DdeI | CTNAG | 2 cut(s) | 457, 603 |
| DinI | GGCGCC | 1 cut(s) | 829 |
| DpnI | GATC | 1 cut(s) | 919 |
| DpnII | GATC | 1 cut(s) | 917 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 693 |
| DriI | GACNNNNNGTC | 1 cut(s) | 407 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 693 |
| Eam1104I | CTCTTC | 1 cut(s) | 255 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 407 |
| EarI | CTCTTC | 1 cut(s) | 255 |
| Eco130I | CCWWGG | 2 cut(s) | 781, 811 |
| Eco24I | GRGCYC | 1 cut(s) | 790 |
| Eco47I | GGWCC | 1 cut(s) | 99 |
| Eco57I | CTGAAG | 1 cut(s) | 366 |
| Eco72I | CACGTG | 1 cut(s) | 749 |
| EcoO109I | RGGNCCY | 1 cut(s) | 99 |
| EcoRII | CCWGG | 1 cut(s) | 790 |
| EcoT14I | CCWWGG | 2 cut(s) | 781, 811 |
| EcoT38I | GRGCYC | 1 cut(s) | 790 |
| EgeI | GGCGCC | 1 cut(s) | 829 |
| EheI | GGCGCC | 1 cut(s) | 829 |
| ErhI | CCWWGG | 2 cut(s) | 781, 811 |
| Esp3I | CGTCTC | 2 cut(s) | 178, 460 |
| FaeI | CATG | 7 cut(s) | 196, 223, 388, 560, 762, 785, 904 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 37 |
| FaqI | GGGAC | 4 cut(s) | 112, 690, 858, 899 |
| FatI | CATG | 7 cut(s) | 192, 219, 384, 556, 758, 781, 900 |
| Fnu4HI | GCNGC | 1 cut(s) | 807 |
| FokI | GGATG | 2 cut(s) | 83, 245 |
| FriOI | GRGCYC | 1 cut(s) | 790 |
| Fsp4HI | GCNGC | 1 cut(s) | 807 |
| FspBI | CTAG | 4 cut(s) | 237, 257, 501, 840 |
| GlaI | GCGC | 3 cut(s) | 255, 650, 829 |
| GluI | GCNGC | 1 cut(s) | 807 |
| GsuI | CTGGAG | 1 cut(s) | 774 |
| HaeII | RGCGCY | 1 cut(s) | 831 |
| HaeIII | GGCC | 1 cut(s) | 780 |
| HgaI | GACGC | 1 cut(s) | 195 |
| HhaI | GCGC | 3 cut(s) | 256, 651, 830 |
| Hin1I | GRCGYC | 2 cut(s) | 187, 828 |
| Hin1II | CATG | 7 cut(s) | 196, 223, 388, 560, 762, 785, 904 |
| Hin6I | GCGC | 3 cut(s) | 254, 649, 828 |
| HinP1I | GCGC | 3 cut(s) | 254, 649, 828 |
| HindIII | AAGCTT | 1 cut(s) | 14 |
| HinfI | GANTC | 3 cut(s) | 35, 284, 327 |
| Hpy166II | GTNNAC | 1 cut(s) | 401 |
| Hpy188I | TCNGA | 6 cut(s) | 209, 346, 364, 460, 599, 732 |
| Hpy188III | TCNNGA | 2 cut(s) | 511, 614 |
| Hpy8I | GTNNAC | 1 cut(s) | 401 |
| Hpy99I | CGWCG | 1 cut(s) | 572 |
| HpyAV | CCTTC | 4 cut(s) | 457, 713, 731, 846 |
| HpyCH4IV | ACGT | 2 cut(s) | 748, 796 |
| HpyCH4V | TGCA | 3 cut(s) | 635, 860, 869 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 262, 655, 866 |
| HpyF3I | CTNAG | 2 cut(s) | 457, 603 |
| HpySE526I | ACGT | 2 cut(s) | 748, 796 |
| Hsp92I | GRCGYC | 2 cut(s) | 187, 828 |
| Hsp92II | CATG | 7 cut(s) | 196, 223, 388, 560, 762, 785, 904 |
| HspAI | GCGC | 3 cut(s) | 254, 649, 828 |
| KasI | GGCGCC | 1 cut(s) | 827 |
| KflI | GGGWCCC | 1 cut(s) | 99 |
| Kzo9I | GATC | 1 cut(s) | 917 |
| LguI | GCTCTTC | 1 cut(s) | 255 |
| LmnI | GCTCC | 4 cut(s) | 415, 655, 793, 803 |
| LpnPI | CCDG | 6 cut(s) | 27, 101, 141, 420, 777, 804 |
| LweI | GCATC | 1 cut(s) | 223 |
| MaeI | CTAG | 4 cut(s) | 237, 257, 501, 840 |
| MaeII | ACGT | 2 cut(s) | 748, 796 |
| MaeIII | GTNAC | 2 cut(s) | 64, 409 |
| MalI | GATC | 1 cut(s) | 919 |
| MbiI | CCGCTC | 2 cut(s) | 170, 658 |
| MboI | GATC | 1 cut(s) | 917 |
| MboII | GAAGA | 1 cut(s) | 272 |
| MfeI | CAATTG | 1 cut(s) | 311 |
| MhlI | GDGCHC | 1 cut(s) | 790 |
| MluCI | AATT | 9 cut(s) | 111, 242, 311, 426, 528, 577, 583, 622, 875 |
| Mly113I | GGCGCC | 1 cut(s) | 828 |
| MlyI | GAGTC | 2 cut(s) | 29, 278 |
| MseI | TTAA | 3 cut(s) | 179, 531, 878 |
| MslI | CAYNNNNRTG | 2 cut(s) | 855, 912 |
| MspR9I | CCNGG | 1 cut(s) | 792 |
| MunI | CAATTG | 1 cut(s) | 311 |
| MvaI | CCWGG | 1 cut(s) | 792 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 262, 655, 866 |
| NarI | GGCGCC | 1 cut(s) | 828 |
| NcoI | CCATGG | 1 cut(s) | 781 |
| NdeII | GATC | 1 cut(s) | 917 |
| NlaIII | CATG | 7 cut(s) | 196, 223, 388, 560, 762, 785, 904 |
| NlaIV | GGNNCC | 7 cut(s) | 100, 101, 120, 662, 789, 805, 829 |
| NmuCI | GTSAC | 2 cut(s) | 64, 409 |
| NspI | RCATGY | 1 cut(s) | 904 |
| OliI | CACNNNNGTG | 1 cut(s) | 855 |
| PciI | ACATGT | 1 cut(s) | 900 |
| PciSI | GCTCTTC | 1 cut(s) | 255 |
| PfeI | GAWTC | 1 cut(s) | 327 |
| Pfl23II | CGTACG | 1 cut(s) | 146 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 797 |
| PfoI | TCCNGGA | 1 cut(s) | 790 |
| PkrI | GCNGC | 1 cut(s) | 808 |
| PleI | GAGTC | 2 cut(s) | 29, 278 |
| PluTI | GGCGCC | 1 cut(s) | 831 |
| PmaCI | CACGTG | 1 cut(s) | 749 |
| PmlI | CACGTG | 1 cut(s) | 749 |
| PpsI | GAGTC | 2 cut(s) | 29, 278 |
| Ppu21I | YACGTR | 1 cut(s) | 749 |
| PpuMI | RGGWCCY | 1 cut(s) | 99 |
| PscI | ACATGT | 1 cut(s) | 900 |
| PshAI | GACNNNNGTC | 1 cut(s) | 903 |
| PshBI | ATTAAT | 1 cut(s) | 531 |
| PsiI | TTATAA | 2 cut(s) | 582, 627 |
| Psp5II | RGGWCCY | 1 cut(s) | 99 |
| Psp6I | CCWGG | 1 cut(s) | 790 |
| PspCI | CACGTG | 1 cut(s) | 749 |
| PspGI | CCWGG | 1 cut(s) | 790 |
| PspLI | CGTACG | 1 cut(s) | 146 |
| PspN4I | GGNNCC | 7 cut(s) | 100, 101, 120, 662, 789, 805, 829 |
| PspPI | GGNCC | 1 cut(s) | 99 |
| PspPPI | RGGWCCY | 1 cut(s) | 99 |
| RsaI | GTAC | 2 cut(s) | 148, 218 |
| RsaNI | GTAC | 2 cut(s) | 147, 217 |
| RseI | CAYNNNNRTG | 2 cut(s) | 855, 912 |
| SapI | GCTCTTC | 1 cut(s) | 255 |
| SaqAI | TTAA | 3 cut(s) | 179, 531, 878 |
| SatI | GCNGC | 1 cut(s) | 807 |
| Sau3AI | GATC | 1 cut(s) | 917 |
| Sau96I | GGNCC | 1 cut(s) | 99 |
| SchI | GAGTC | 2 cut(s) | 29, 278 |
| ScrFI | CCNGG | 1 cut(s) | 792 |
| SduI | GDGCHC | 1 cut(s) | 790 |
| SfaNI | GCATC | 1 cut(s) | 223 |
| SfcI | CTRYAG | 1 cut(s) | 543 |
| SfoI | GGCGCC | 1 cut(s) | 829 |
| SinI | GGWCC | 1 cut(s) | 99 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 855, 912 |
| Sse9I | AATT | 9 cut(s) | 111, 242, 311, 426, 528, 577, 583, 622, 875 |
| SsiI | CCGC | 3 cut(s) | 168, 658, 807 |
| SspDI | GGCGCC | 1 cut(s) | 827 |
| SspI | AATATT | 1 cut(s) | 356 |
| SspMI | CTAG | 4 cut(s) | 237, 257, 501, 840 |
| StyD4I | CCNGG | 1 cut(s) | 790 |
| StyI | CCWWGG | 2 cut(s) | 781, 811 |
| TaiI | ACGT | 2 cut(s) | 751, 799 |
| TasI | AATT | 9 cut(s) | 111, 242, 311, 426, 528, 577, 583, 622, 875 |
| TatI | WGTACW | 1 cut(s) | 216 |
| TauI | GCSGC | 1 cut(s) | 809 |
| TfiI | GAWTC | 1 cut(s) | 327 |
| Tru1I | TTAA | 3 cut(s) | 179, 531, 878 |
| Tru9I | TTAA | 3 cut(s) | 179, 531, 878 |
| TseFI | GTSAC | 2 cut(s) | 64, 409 |
| Tsp45I | GTSAC | 2 cut(s) | 64, 409 |
| TspDTI | ATGAA | 2 cut(s) | 509, 750 |
| TspGWI | ACGGA | 3 cut(s) | 83, 428, 699 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 797 |
| VpaK11BI | GGWCC | 1 cut(s) | 99 |
| VspI | ATTAAT | 1 cut(s) | 531 |
| XceI | RCATGY | 1 cut(s) | 904 |
| XspI | CTAG | 4 cut(s) | 237, 257, 501, 840 |