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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1010 |
| AccII | CGCG | 1 cut(s) | 927 |
| AciI | CCGC | 3 cut(s) | 179, 337, 619 |
| AclWI | GGATC | 4 cut(s) | 163, 176, 809, 879 |
| AcoI | YGGCCR | 1 cut(s) | 997 |
| AcsI | RAATTY | 1 cut(s) | 686 |
| AcyI | GRCGYC | 1 cut(s) | 1011 |
| AdeI | CACNNNGTG | 1 cut(s) | 1195 |
| AfaI | GTAC | 1 cut(s) | 506 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 130, 938 |
| AflII | CTTAAG | 1 cut(s) | 347 |
| AflIII | ACRYGT | 1 cut(s) | 212 |
| AgeI | ACCGGT | 1 cut(s) | 123 |
| AgsI | TTSAA | 4 cut(s) | 26, 56, 634, 1048 |
| AjnI | CCWGG | 2 cut(s) | 363, 387 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 546, 578 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 134, 166 |
| AluBI | AGCT | 6 cut(s) | 413, 419, 820, 830, 1136, 1187 |
| AluI | AGCT | 6 cut(s) | 413, 419, 820, 830, 1136, 1187 |
| Alw21I | GWGCWC | 2 cut(s) | 822, 1138 |
| Alw26I | GTCTC | 1 cut(s) | 754 |
| AlwI | GGATC | 4 cut(s) | 163, 176, 809, 879 |
| Ama87I | CYCGRG | 1 cut(s) | 377 |
| AoxI | GGCC | 1 cut(s) | 997 |
| ApeKI | GCWGC | 1 cut(s) | 437 |
| ApoI | RAATTY | 1 cut(s) | 686 |
| AsiGI | ACCGGT | 1 cut(s) | 123 |
| AspLEI | GCGC | 4 cut(s) | 198, 929, 1013, 1054 |
| AsuHPI | GGTGA | 2 cut(s) | 120, 736 |
| AvaI | CYCGRG | 1 cut(s) | 377 |
| BaeGI | GKGCMC | 1 cut(s) | 1123 |
| BalI | TGGCCA | 1 cut(s) | 999 |
| BamHI | GGATCC | 1 cut(s) | 168 |
| BanI | GGYRCC | 1 cut(s) | 1010 |
| BanII | GRGCYC | 2 cut(s) | 822, 1138 |
| BauI | CACGAG | 1 cut(s) | 1137 |
| BbsI | GAAGAC | 2 cut(s) | 531, 734 |
| Bbv12I | GWGCWC | 2 cut(s) | 822, 1138 |
| BbvI | GCAGC | 1 cut(s) | 449 |
| BccI | CCATC | 4 cut(s) | 473, 600, 754, 1038 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 773, 807 |
| BciT130I | CCWGG | 2 cut(s) | 365, 389 |
| BciVI | GTATCC | 1 cut(s) | 361 |
| BcoDI | GTCTC | 1 cut(s) | 754 |
| BfaI | CTAG | 4 cut(s) | 8, 32, 384, 1223 |
| BfmI | CTRYAG | 1 cut(s) | 792 |
| BfoI | RGCGCY | 3 cut(s) | 199, 1014, 1055 |
| BfrI | CTTAAG | 1 cut(s) | 347 |
| BfuI | GTATCC | 1 cut(s) | 361 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 446 |
| BisI | GCNGC | 1 cut(s) | 438 |
| BlsI | GCNGC | 1 cut(s) | 439 |
| Bme1390I | CCNGG | 2 cut(s) | 365, 389 |
| BmeT110I | CYCGRG | 1 cut(s) | 377 |
| BmiI | GGNNCC | 6 cut(s) | 93, 102, 170, 426, 953, 1012 |
| BmrFI | CCNGG | 2 cut(s) | 365, 389 |
| BmsI | GCATC | 3 cut(s) | 13, 700, 867 |
| BpiI | GAAGAC | 2 cut(s) | 531, 734 |
| BpmI | CTGGAG | 1 cut(s) | 485 |
| BpuEI | CTTGAG | 1 cut(s) | 399 |
| Bsa29I | ATCGAT | 1 cut(s) | 783 |
| BsaAI | YACGTR | 1 cut(s) | 215 |
| BsaHI | GRCGYC | 1 cut(s) | 1011 |
| BsaJI | CCNNGG | 1 cut(s) | 888 |
| BsaWI | WCCGGW | 3 cut(s) | 97, 123, 130 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 134, 164 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 130, 938 |
| Bse118I | RCCGGY | 3 cut(s) | 103, 123, 233 |
| Bse1I | ACTGG | 2 cut(s) | 307, 502 |
| Bse3DI | GCAATG | 1 cut(s) | 720 |
| BseBI | CCWGG | 2 cut(s) | 365, 389 |
| BseCI | ATCGAT | 1 cut(s) | 783 |
| BseDI | CCNNGG | 1 cut(s) | 888 |
| BseGI | GGATG | 5 cut(s) | 204, 264, 397, 496, 858 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 130, 938 |
| BseMI | GCAATG | 1 cut(s) | 720 |
| BseMII | CTCAG | 1 cut(s) | 1065 |
| BseNI | ACTGG | 2 cut(s) | 307, 502 |
| BseRI | GAGGAG | 1 cut(s) | 1082 |
| BseSI | GKGCMC | 1 cut(s) | 1123 |
| BseXI | GCAGC | 1 cut(s) | 449 |
| Bsh1236I | CGCG | 1 cut(s) | 927 |
| BshFI | GGCC | 1 cut(s) | 999 |
| BshNI | GGYRCC | 1 cut(s) | 1010 |
| BshTI | ACCGGT | 1 cut(s) | 123 |
| BshVI | ATCGAT | 1 cut(s) | 783 |
| BsiHKAI | GWGCWC | 2 cut(s) | 822, 1138 |
| BsiHKCI | CYCGRG | 1 cut(s) | 377 |
| BsiSI | CCGG | 6 cut(s) | 98, 104, 124, 131, 234, 256 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 130, 938 |
| BsmAI | GTCTC | 1 cut(s) | 754 |
| BsmBI | CGTCTC | 1 cut(s) | 754 |
| BsnI | GGCC | 1 cut(s) | 999 |
| BsoBI | CYCGRG | 1 cut(s) | 377 |
| Bsp1286I | GDGCHC | 3 cut(s) | 822, 1123, 1138 |
| Bsp143I | GATC | 6 cut(s) | 168, 702, 801, 884, 1207, 1219 |
| BspACI | CCGC | 3 cut(s) | 179, 337, 619 |
| BspANI | GGCC | 1 cut(s) | 999 |
| BspCNI | CTCAG | 1 cut(s) | 1066 |
| BspDI | ATCGAT | 1 cut(s) | 783 |
| BspFNI | CGCG | 1 cut(s) | 927 |
| BspHI | TCATGA | 1 cut(s) | 814 |
| BspLI | GGNNCC | 6 cut(s) | 93, 102, 170, 426, 953, 1012 |
| BspMAI | CTGCAG | 1 cut(s) | 796 |
| BspPI | GGATC | 4 cut(s) | 163, 176, 809, 879 |
| BspT107I | GGYRCC | 1 cut(s) | 1010 |
| BspTI | CTTAAG | 1 cut(s) | 347 |
| BsrDI | GCAATG | 1 cut(s) | 720 |
| BsrFI | RCCGGY | 3 cut(s) | 103, 123, 233 |
| BsrI | ACTGG | 2 cut(s) | 307, 502 |
| BssAI | RCCGGY | 3 cut(s) | 103, 123, 233 |
| BssECI | CCNNGG | 1 cut(s) | 888 |
| BssMI | GATC | 6 cut(s) | 168, 702, 801, 884, 1207, 1219 |
| BssNI | GRCGYC | 1 cut(s) | 1011 |
| BssSI | CACGAG | 1 cut(s) | 1137 |
| Bst2BI | CACGAG | 1 cut(s) | 1137 |
| Bst2UI | CCWGG | 2 cut(s) | 365, 389 |
| Bst4CI | ACNGT | 2 cut(s) | 88, 748 |
| Bst6I | CTCTTC | 1 cut(s) | 952 |
| BstACI | GRCGYC | 1 cut(s) | 1011 |
| BstAFI | CTTAAG | 1 cut(s) | 347 |
| BstBAI | YACGTR | 1 cut(s) | 215 |
| BstC8I | GCNNGC | 2 cut(s) | 341, 411 |
| BstDEI | CTNAG | 4 cut(s) | 442, 768, 1023, 1074 |
| BstDSI | CCRYGG | 1 cut(s) | 888 |
| BstEII | GGTNACC | 1 cut(s) | 126 |
| BstF5I | GGATG | 5 cut(s) | 204, 264, 397, 496, 858 |
| BstFNI | CGCG | 1 cut(s) | 927 |
| BstH2I | RGCGCY | 3 cut(s) | 199, 1014, 1055 |
| BstHHI | GCGC | 4 cut(s) | 198, 929, 1013, 1054 |
| BstKTI | GATC | 6 cut(s) | 171, 705, 804, 887, 1210, 1222 |
| BstMAI | GTCTC | 1 cut(s) | 754 |
| BstMBI | GATC | 6 cut(s) | 168, 702, 801, 884, 1207, 1219 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 187, 446, 455, 1049, 1163, 1184 |
| BstNI | CCWGG | 2 cut(s) | 365, 389 |
| BstPI | GGTNACC | 1 cut(s) | 126 |
| BstSCI | CCNGG | 2 cut(s) | 363, 387 |
| BstSFI | CTRYAG | 1 cut(s) | 792 |
| BstSLI | GKGCMC | 1 cut(s) | 1123 |
| BstUI | CGCG | 1 cut(s) | 927 |
| BstV1I | GCAGC | 1 cut(s) | 449 |
| BstV2I | GAAGAC | 2 cut(s) | 531, 734 |
| BstX2I | RGATCY | 2 cut(s) | 168, 884 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1007 |
| BstYI | RGATCY | 2 cut(s) | 168, 884 |
| Bsu15I | ATCGAT | 1 cut(s) | 783 |
| BsuI | GTATCC | 1 cut(s) | 361 |
| BsuRI | GGCC | 1 cut(s) | 999 |
| BsuTUI | ATCGAT | 1 cut(s) | 783 |
| BtgI | CCRYGG | 1 cut(s) | 888 |
| BtsCI | GGATG | 5 cut(s) | 204, 264, 397, 496, 858 |
| BtsI | GCAGTG | 1 cut(s) | 1152 |
| BtsIMutI | CAGTG | 2 cut(s) | 840, 1152 |
| Cac8I | GCNNGC | 2 cut(s) | 341, 411 |
| CciI | TCATGA | 1 cut(s) | 814 |
| CfoI | GCGC | 4 cut(s) | 198, 929, 1013, 1054 |
| Cfr10I | RCCGGY | 3 cut(s) | 103, 123, 233 |
| ClaI | ATCGAT | 1 cut(s) | 783 |
| Csp6I | GTAC | 1 cut(s) | 505 |
| CspAI | ACCGGT | 1 cut(s) | 123 |
| CviAII | CATG | 4 cut(s) | 807, 815, 851, 1001 |
| CviQI | GTAC | 1 cut(s) | 505 |
| DdeI | CTNAG | 4 cut(s) | 442, 768, 1023, 1074 |
| DinI | GGCGCC | 1 cut(s) | 1012 |
| DpnI | GATC | 6 cut(s) | 170, 704, 803, 886, 1209, 1221 |
| DpnII | GATC | 6 cut(s) | 168, 702, 801, 884, 1207, 1219 |
| DraIII | CACNNNGTG | 1 cut(s) | 1195 |
| EaeI | YGGCCR | 1 cut(s) | 997 |
| Eam1104I | CTCTTC | 1 cut(s) | 952 |
| EarI | CTCTTC | 1 cut(s) | 952 |
| EciI | GGCGGA | 1 cut(s) | 326 |
| Ecl136II | GAGCTC | 2 cut(s) | 820, 1136 |
| Eco24I | GRGCYC | 2 cut(s) | 822, 1138 |
| Eco53kI | GAGCTC | 2 cut(s) | 820, 1136 |
| Eco88I | CYCGRG | 1 cut(s) | 377 |
| Eco91I | GGTNACC | 1 cut(s) | 126 |
| EcoICRI | GAGCTC | 2 cut(s) | 820, 1136 |
| EcoO65I | GGTNACC | 1 cut(s) | 126 |
| EcoRI | GAATTC | 1 cut(s) | 686 |
| EcoRII | CCWGG | 2 cut(s) | 363, 387 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 2 cut(s) | 822, 1138 |
| EgeI | GGCGCC | 1 cut(s) | 1012 |
| EheI | GGCGCC | 1 cut(s) | 1012 |
| Esp3I | CGTCTC | 1 cut(s) | 754 |
| FaeI | CATG | 4 cut(s) | 810, 818, 854, 1004 |
| FatI | CATG | 4 cut(s) | 806, 814, 850, 1000 |
| FauNDI | CATATG | 1 cut(s) | 486 |
| Fnu4HI | GCNGC | 1 cut(s) | 438 |
| FokI | GGATG | 5 cut(s) | 191, 271, 404, 503, 845 |
| FriOI | GRGCYC | 2 cut(s) | 822, 1138 |
| Fsp4HI | GCNGC | 1 cut(s) | 438 |
| FspBI | CTAG | 4 cut(s) | 8, 32, 384, 1223 |
| GlaI | GCGC | 4 cut(s) | 197, 928, 1012, 1053 |
| GluI | GCNGC | 1 cut(s) | 438 |
| GsuI | CTGGAG | 1 cut(s) | 485 |
| HaeII | RGCGCY | 3 cut(s) | 199, 1014, 1055 |
| HaeIII | GGCC | 1 cut(s) | 999 |
| HapII | CCGG | 6 cut(s) | 98, 104, 124, 131, 234, 256 |
| HhaI | GCGC | 4 cut(s) | 198, 929, 1013, 1054 |
| Hin1I | GRCGYC | 1 cut(s) | 1011 |
| Hin1II | CATG | 4 cut(s) | 810, 818, 854, 1004 |
| Hin6I | GCGC | 4 cut(s) | 196, 927, 1011, 1052 |
| HinP1I | GCGC | 4 cut(s) | 196, 927, 1011, 1052 |
| HincII | GTYRAC | 2 cut(s) | 229, 239 |
| HindII | GTYRAC | 2 cut(s) | 229, 239 |
| HindIII | AAGCTT | 1 cut(s) | 417 |
| HpaII | CCGG | 6 cut(s) | 98, 104, 124, 131, 234, 256 |
| HphI | GGTGA | 2 cut(s) | 120, 736 |
| Hpy166II | GTNNAC | 3 cut(s) | 229, 239, 965 |
| Hpy188I | TCNGA | 3 cut(s) | 310, 658, 1075 |
| Hpy8I | GTNNAC | 3 cut(s) | 229, 239, 965 |
| Hpy99I | CGWCG | 1 cut(s) | 88 |
| HpyAV | CCTTC | 3 cut(s) | 32, 528, 751 |
| HpyCH4III | ACNGT | 2 cut(s) | 88, 748 |
| HpyCH4IV | ACGT | 3 cut(s) | 214, 570, 967 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 669, 713, 794 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 187, 446, 455, 1049, 1163, 1184 |
| HpyF3I | CTNAG | 4 cut(s) | 442, 768, 1023, 1074 |
| HpySE526I | ACGT | 3 cut(s) | 214, 570, 967 |
| Hsp92I | GRCGYC | 1 cut(s) | 1011 |
| Hsp92II | CATG | 4 cut(s) | 810, 818, 854, 1004 |
| HspAI | GCGC | 4 cut(s) | 196, 927, 1011, 1052 |
| KasI | GGCGCC | 1 cut(s) | 1010 |
| Kzo9I | GATC | 6 cut(s) | 168, 702, 801, 884, 1207, 1219 |
| LmnI | GCTCC | 3 cut(s) | 292, 504, 827 |
| Lsp1109I | GCAGC | 1 cut(s) | 449 |
| LweI | GCATC | 3 cut(s) | 13, 700, 867 |
| MaeI | CTAG | 4 cut(s) | 8, 32, 384, 1223 |
| MaeII | ACGT | 3 cut(s) | 214, 570, 967 |
| MaeIII | GTNAC | 7 cut(s) | 15, 126, 263, 575, 787, 838, 1150 |
| MalI | GATC | 6 cut(s) | 170, 704, 803, 886, 1209, 1221 |
| MboI | GATC | 6 cut(s) | 168, 702, 801, 884, 1207, 1219 |
| MflI | RGATCY | 2 cut(s) | 168, 884 |
| MhlI | GDGCHC | 3 cut(s) | 822, 1123, 1138 |
| MlsI | TGGCCA | 1 cut(s) | 999 |
| MluCI | AATT | 5 cut(s) | 275, 686, 877, 916, 1146 |
| MluNI | TGGCCA | 1 cut(s) | 999 |
| Mly113I | GGCGCC | 1 cut(s) | 1011 |
| MlyI | GAGTC | 5 cut(s) | 389, 472, 572, 724, 1079 |
| Mox20I | TGGCCA | 1 cut(s) | 999 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MscI | TGGCCA | 1 cut(s) | 999 |
| MseI | TTAA | 5 cut(s) | 270, 348, 473, 672, 680 |
| MslI | CAYNNNNRTG | 4 cut(s) | 473, 489, 863, 1005 |
| Msp20I | TGGCCA | 1 cut(s) | 999 |
| MspCI | CTTAAG | 1 cut(s) | 347 |
| MspI | CCGG | 6 cut(s) | 98, 104, 124, 131, 234, 256 |
| MspR9I | CCNGG | 2 cut(s) | 365, 389 |
| MvaI | CCWGG | 2 cut(s) | 365, 389 |
| MvnI | CGCG | 1 cut(s) | 927 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 187, 446, 455, 1049, 1163, 1184 |
| NarI | GGCGCC | 1 cut(s) | 1011 |
| NdeI | CATATG | 1 cut(s) | 486 |
| NdeII | GATC | 6 cut(s) | 168, 702, 801, 884, 1207, 1219 |
| NlaIII | CATG | 4 cut(s) | 810, 818, 854, 1004 |
| NlaIV | GGNNCC | 6 cut(s) | 93, 102, 170, 426, 953, 1012 |
| NmuCI | GTSAC | 4 cut(s) | 126, 575, 838, 1150 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PaeR7I | CTCGAG | 1 cut(s) | 377 |
| PagI | TCATGA | 1 cut(s) | 814 |
| PfeI | GAWTC | 6 cut(s) | 73, 360, 373, 494, 780, 911 |
| PfoI | TCCNGGA | 1 cut(s) | 363 |
| PinAI | ACCGGT | 1 cut(s) | 123 |
| PkrI | GCNGC | 1 cut(s) | 439 |
| PleI | GAGTC | 5 cut(s) | 388, 472, 572, 724, 1078 |
| PluTI | GGCGCC | 1 cut(s) | 1014 |
| PpsI | GAGTC | 5 cut(s) | 388, 472, 572, 724, 1078 |
| Ppu21I | YACGTR | 1 cut(s) | 215 |
| Psp124BI | GAGCTC | 2 cut(s) | 822, 1138 |
| Psp6I | CCWGG | 2 cut(s) | 363, 387 |
| PspEI | GGTNACC | 1 cut(s) | 126 |
| PspGI | CCWGG | 2 cut(s) | 363, 387 |
| PspN4I | GGNNCC | 6 cut(s) | 93, 102, 170, 426, 953, 1012 |
| PstI | CTGCAG | 1 cut(s) | 796 |
| PsuI | RGATCY | 2 cut(s) | 168, 884 |
| RsaI | GTAC | 1 cut(s) | 506 |
| RsaNI | GTAC | 1 cut(s) | 505 |
| RseI | CAYNNNNRTG | 4 cut(s) | 473, 489, 863, 1005 |
| SacI | GAGCTC | 2 cut(s) | 822, 1138 |
| SaqAI | TTAA | 5 cut(s) | 270, 348, 473, 672, 680 |
| SatI | GCNGC | 1 cut(s) | 438 |
| Sau3AI | GATC | 6 cut(s) | 168, 702, 801, 884, 1207, 1219 |
| SchI | GAGTC | 5 cut(s) | 389, 472, 572, 724, 1079 |
| ScrFI | CCNGG | 2 cut(s) | 365, 389 |
| SduI | GDGCHC | 3 cut(s) | 822, 1123, 1138 |
| SfaNI | GCATC | 3 cut(s) | 13, 700, 867 |
| SfcI | CTRYAG | 1 cut(s) | 792 |
| SfoI | GGCGCC | 1 cut(s) | 1012 |
| Sfr274I | CTCGAG | 1 cut(s) | 377 |
| SlaI | CTCGAG | 1 cut(s) | 377 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 473, 489, 863, 1005 |
| SmlI | CTYRAG | 3 cut(s) | 347, 377, 414 |
| SmoI | CTYRAG | 3 cut(s) | 347, 377, 414 |
| Sse9I | AATT | 5 cut(s) | 275, 686, 877, 916, 1146 |
| SsiI | CCGC | 3 cut(s) | 179, 337, 619 |
| SspDI | GGCGCC | 1 cut(s) | 1010 |
| SspMI | CTAG | 4 cut(s) | 8, 32, 384, 1223 |
| SstI | GAGCTC | 2 cut(s) | 822, 1138 |
| StyD4I | CCNGG | 2 cut(s) | 363, 387 |
| TaaI | ACNGT | 2 cut(s) | 88, 748 |
| TaiI | ACGT | 3 cut(s) | 217, 573, 970 |
| TaqI | TCGA | 7 cut(s) | 140, 378, 552, 778, 783, 881, 1096 |
| TasI | AATT | 5 cut(s) | 275, 686, 877, 916, 1146 |
| TfiI | GAWTC | 6 cut(s) | 73, 360, 373, 494, 780, 911 |
| Tru1I | TTAA | 5 cut(s) | 270, 348, 473, 672, 680 |
| Tru9I | TTAA | 5 cut(s) | 270, 348, 473, 672, 680 |
| TscAI | CASTG | 2 cut(s) | 847, 1159 |
| TseFI | GTSAC | 4 cut(s) | 126, 575, 838, 1150 |
| TseI | GCWGC | 1 cut(s) | 437 |
| Tsp45I | GTSAC | 4 cut(s) | 126, 575, 838, 1150 |
| TspDTI | ATGAA | 4 cut(s) | 530, 534, 803, 848 |
| TspGWI | ACGGA | 4 cut(s) | 563, 814, 877, 964 |
| TspRI | CASTG | 2 cut(s) | 847, 1159 |
| Vha464I | CTTAAG | 1 cut(s) | 347 |
| XapI | RAATTY | 1 cut(s) | 686 |
| XbaI | TCTAGA | 2 cut(s) | 7, 1222 |
| XhoI | CTCGAG | 1 cut(s) | 377 |
| XspI | CTAG | 4 cut(s) | 8, 32, 384, 1223 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |