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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 573 |
| AccB1I | GGYRCC | 3 cut(s) | 528, 686, 842 |
| AccBSI | CCGCTC | 1 cut(s) | 179 |
| AciI | CCGC | 3 cut(s) | 79, 179, 607 |
| AcoI | YGGCCR | 1 cut(s) | 673 |
| AcsI | RAATTY | 2 cut(s) | 353, 909 |
| AcyI | GRCGYC | 4 cut(s) | 529, 813, 825, 843 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 787, 791 |
| AflIII | ACRYGT | 1 cut(s) | 60 |
| AgsI | TTSAA | 2 cut(s) | 301, 724 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AluBI | AGCT | 3 cut(s) | 155, 487, 803 |
| AluI | AGCT | 3 cut(s) | 155, 487, 803 |
| Alw21I | GWGCWC | 1 cut(s) | 489 |
| Alw26I | GTCTC | 1 cut(s) | 735 |
| AoxI | GGCC | 3 cut(s) | 93, 180, 673 |
| ApeKI | GCWGC | 1 cut(s) | 857 |
| ApoI | RAATTY | 2 cut(s) | 353, 909 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 330, 506 |
| AspA2I | CCTAGG | 2 cut(s) | 785, 847 |
| AspLEI | GCGC | 3 cut(s) | 531, 797, 845 |
| AspS9I | GGNCC | 1 cut(s) | 575 |
| AsuHPI | GGTGA | 2 cut(s) | 856, 863 |
| AsuII | TTCGAA | 1 cut(s) | 877 |
| AvaII | GGWCC | 1 cut(s) | 575 |
| AvrII | CCTAGG | 2 cut(s) | 785, 847 |
| BalI | TGGCCA | 1 cut(s) | 675 |
| BanI | GGYRCC | 3 cut(s) | 528, 686, 842 |
| BanII | GRGCYC | 1 cut(s) | 489 |
| BbsI | GAAGAC | 2 cut(s) | 273, 401 |
| Bbv12I | GWGCWC | 1 cut(s) | 489 |
| BbvI | GCAGC | 1 cut(s) | 844 |
| BccI | CCATC | 9 cut(s) | 92, 215, 421, 422, 714, 752, 815, 833, 837 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 440, 474 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BciVI | GTATCC | 1 cut(s) | 550 |
| BcoDI | GTCTC | 1 cut(s) | 735 |
| BfaI | CTAG | 3 cut(s) | 126, 786, 848 |
| BfoI | RGCGCY | 2 cut(s) | 532, 846 |
| BfuI | GTATCC | 1 cut(s) | 550 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 2 cut(s) | 180, 858 |
| BlnI | CCTAGG | 2 cut(s) | 785, 847 |
| BlsI | GCNGC | 2 cut(s) | 181, 859 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| Bme18I | GGWCC | 1 cut(s) | 575 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 575 |
| BmiI | GGNNCC | 4 cut(s) | 281, 530, 688, 844 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 3 cut(s) | 94, 367, 844 |
| BpiI | GAAGAC | 2 cut(s) | 273, 401 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu10I | CCTNAGC | 1 cut(s) | 156 |
| Bpu14I | TTCGAA | 1 cut(s) | 877 |
| BpuEI | CTTGAG | 3 cut(s) | 74, 140, 881 |
| Bsa29I | ATCGAT | 1 cut(s) | 450 |
| BsaHI | GRCGYC | 4 cut(s) | 529, 813, 825, 843 |
| BsaJI | CCNNGG | 3 cut(s) | 785, 816, 847 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 787, 791 |
| Bse1I | ACTGG | 2 cut(s) | 49, 244 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseCI | ATCGAT | 1 cut(s) | 450 |
| BseDI | CCNNGG | 3 cut(s) | 785, 816, 847 |
| BseGI | GGATG | 3 cut(s) | 210, 238, 826 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 787, 791 |
| BseMII | CTCAG | 2 cut(s) | 170, 783 |
| BseNI | ACTGG | 2 cut(s) | 49, 244 |
| BseRI | GAGGAG | 1 cut(s) | 272 |
| BseXI | GCAGC | 1 cut(s) | 844 |
| BshFI | GGCC | 3 cut(s) | 95, 182, 675 |
| BshNI | GGYRCC | 3 cut(s) | 528, 686, 842 |
| BshVI | ATCGAT | 1 cut(s) | 450 |
| BsiHKAI | GWGCWC | 1 cut(s) | 489 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 787, 791 |
| BsmAI | GTCTC | 1 cut(s) | 735 |
| BsnI | GGCC | 3 cut(s) | 95, 182, 675 |
| Bsp119I | TTCGAA | 1 cut(s) | 877 |
| Bsp1286I | GDGCHC | 1 cut(s) | 489 |
| Bsp143I | GATC | 2 cut(s) | 369, 468 |
| Bsp19I | CCATGG | 1 cut(s) | 816 |
| BspACI | CCGC | 3 cut(s) | 79, 179, 607 |
| BspANI | GGCC | 3 cut(s) | 95, 182, 675 |
| BspCNI | CTCAG | 2 cut(s) | 169, 782 |
| BspDI | ATCGAT | 1 cut(s) | 450 |
| BspHI | TCATGA | 1 cut(s) | 481 |
| BspLI | GGNNCC | 4 cut(s) | 281, 530, 688, 844 |
| BspT104I | TTCGAA | 1 cut(s) | 877 |
| BspT107I | GGYRCC | 3 cut(s) | 528, 686, 842 |
| BsrBI | CCGCTC | 1 cut(s) | 179 |
| BsrI | ACTGG | 2 cut(s) | 49, 244 |
| BssECI | CCNNGG | 3 cut(s) | 785, 816, 847 |
| BssMI | GATC | 2 cut(s) | 369, 468 |
| BssNI | GRCGYC | 4 cut(s) | 529, 813, 825, 843 |
| BssT1I | CCWWGG | 3 cut(s) | 785, 816, 847 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 1 cut(s) | 628 |
| BstACI | GRCGYC | 4 cut(s) | 529, 813, 825, 843 |
| BstBI | TTCGAA | 1 cut(s) | 877 |
| BstC8I | GCNNGC | 3 cut(s) | 83, 153, 793 |
| BstDEI | CTNAG | 7 cut(s) | 106, 156, 184, 435, 551, 699, 769 |
| BstDSI | CCRYGG | 1 cut(s) | 816 |
| BstEII | GGTNACC | 1 cut(s) | 602 |
| BstF5I | GGATG | 3 cut(s) | 210, 238, 826 |
| BstH2I | RGCGCY | 2 cut(s) | 532, 846 |
| BstHHI | GCGC | 3 cut(s) | 531, 797, 845 |
| BstKTI | GATC | 2 cut(s) | 372, 471 |
| BstMAI | GTCTC | 1 cut(s) | 735 |
| BstMBI | GATC | 2 cut(s) | 369, 468 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 535 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstNSI | RCATGY | 1 cut(s) | 64 |
| BstPI | GGTNACC | 1 cut(s) | 602 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstV1I | GCAGC | 1 cut(s) | 844 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 401 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 683 |
| Bsu15I | ATCGAT | 1 cut(s) | 450 |
| BsuI | GTATCC | 1 cut(s) | 550 |
| BsuRI | GGCC | 3 cut(s) | 95, 182, 675 |
| BsuTUI | ATCGAT | 1 cut(s) | 450 |
| BtgI | CCRYGG | 1 cut(s) | 816 |
| BtgZI | GCGATG | 1 cut(s) | 395 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 3 cut(s) | 210, 238, 826 |
| BtsI | GCAGTG | 1 cut(s) | 762 |
| BtsIMutI | CAGTG | 2 cut(s) | 623, 762 |
| Cac8I | GCNNGC | 3 cut(s) | 83, 153, 793 |
| CciI | TCATGA | 1 cut(s) | 481 |
| CfoI | GCGC | 3 cut(s) | 531, 797, 845 |
| Cfr13I | GGNCC | 1 cut(s) | 575 |
| ClaI | ATCGAT | 1 cut(s) | 450 |
| CseI | GACGC | 4 cut(s) | 725, 814, 821, 901 |
| CviAII | CATG | 5 cut(s) | 61, 482, 677, 809, 817 |
| DdeI | CTNAG | 7 cut(s) | 106, 156, 184, 435, 551, 699, 769 |
| DinI | GGCGCC | 2 cut(s) | 530, 844 |
| DpnI | GATC | 2 cut(s) | 371, 470 |
| DpnII | GATC | 2 cut(s) | 369, 468 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 573 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 573 |
| EaeI | YGGCCR | 1 cut(s) | 673 |
| Eam1104I | CTCTTC | 1 cut(s) | 628 |
| EarI | CTCTTC | 1 cut(s) | 628 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 487 |
| Eco130I | CCWWGG | 3 cut(s) | 785, 816, 847 |
| Eco24I | GRGCYC | 1 cut(s) | 489 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 575 |
| Eco53kI | GAGCTC | 1 cut(s) | 487 |
| Eco91I | GGTNACC | 1 cut(s) | 602 |
| EcoICRI | GAGCTC | 1 cut(s) | 487 |
| EcoO65I | GGTNACC | 1 cut(s) | 602 |
| EcoRI | GAATTC | 1 cut(s) | 353 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT14I | CCWWGG | 3 cut(s) | 785, 816, 847 |
| EcoT38I | GRGCYC | 1 cut(s) | 489 |
| EgeI | GGCGCC | 2 cut(s) | 530, 844 |
| EheI | GGCGCC | 2 cut(s) | 530, 844 |
| ErhI | CCWWGG | 3 cut(s) | 785, 816, 847 |
| FaeI | CATG | 5 cut(s) | 64, 485, 680, 812, 820 |
| FatI | CATG | 5 cut(s) | 60, 481, 676, 808, 816 |
| Fnu4HI | GCNGC | 2 cut(s) | 180, 858 |
| FokI | GGATG | 3 cut(s) | 197, 245, 833 |
| FriOI | GRGCYC | 1 cut(s) | 489 |
| Fsp4HI | GCNGC | 2 cut(s) | 180, 858 |
| FspBI | CTAG | 3 cut(s) | 126, 786, 848 |
| GlaI | GCGC | 3 cut(s) | 530, 796, 844 |
| GluI | GCNGC | 2 cut(s) | 180, 858 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 2 cut(s) | 532, 846 |
| HaeIII | GGCC | 3 cut(s) | 95, 182, 675 |
| HgaI | GACGC | 4 cut(s) | 725, 814, 821, 901 |
| HhaI | GCGC | 3 cut(s) | 531, 797, 845 |
| Hin1I | GRCGYC | 4 cut(s) | 529, 813, 825, 843 |
| Hin1II | CATG | 5 cut(s) | 64, 485, 680, 812, 820 |
| Hin6I | GCGC | 3 cut(s) | 529, 795, 843 |
| HinP1I | GCGC | 3 cut(s) | 529, 795, 843 |
| HinfI | GANTC | 6 cut(s) | 102, 115, 220, 236, 397, 447 |
| HphI | GGTGA | 2 cut(s) | 856, 863 |
| Hpy166II | GTNNAC | 1 cut(s) | 775 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 325 |
| Hpy188III | TCNNGA | 6 cut(s) | 71, 119, 311, 482, 564, 748 |
| Hpy8I | GTNNAC | 1 cut(s) | 775 |
| HpyAV | CCTTC | 3 cut(s) | 270, 418, 593 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 643 |
| HpyCH4V | TGCA | 3 cut(s) | 422, 461, 860 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 535 |
| HpyF3I | CTNAG | 7 cut(s) | 106, 156, 184, 435, 551, 699, 769 |
| HpySE526I | ACGT | 2 cut(s) | 135, 643 |
| Hsp92I | GRCGYC | 4 cut(s) | 529, 813, 825, 843 |
| Hsp92II | CATG | 5 cut(s) | 64, 485, 680, 812, 820 |
| HspAI | GCGC | 3 cut(s) | 529, 795, 843 |
| KasI | GGCGCC | 2 cut(s) | 528, 842 |
| Kzo9I | GATC | 2 cut(s) | 369, 468 |
| LmnI | GCTCC | 2 cut(s) | 246, 285 |
| Lsp1109I | GCAGC | 1 cut(s) | 844 |
| LweI | GCATC | 3 cut(s) | 94, 367, 844 |
| MaeI | CTAG | 3 cut(s) | 126, 786, 848 |
| MaeII | ACGT | 2 cut(s) | 135, 643 |
| MaeIII | GTNAC | 2 cut(s) | 602, 920 |
| MalI | GATC | 2 cut(s) | 371, 470 |
| MbiI | CCGCTC | 1 cut(s) | 179 |
| MboI | GATC | 2 cut(s) | 369, 468 |
| MboII | GAAGA | 4 cut(s) | 275, 278, 406, 645 |
| MfeI | CAATTG | 1 cut(s) | 32 |
| MhlI | GDGCHC | 1 cut(s) | 489 |
| MlsI | TGGCCA | 1 cut(s) | 675 |
| MluCI | AATT | 4 cut(s) | 17, 32, 353, 909 |
| MluNI | TGGCCA | 1 cut(s) | 675 |
| Mly113I | GGCGCC | 2 cut(s) | 529, 843 |
| MlyI | GAGTC | 2 cut(s) | 214, 391 |
| MnlI | CCTC | 8 cut(s) | 181, 293, 518, 525, 649, 653, 679, 778 |
| Mox20I | TGGCCA | 1 cut(s) | 675 |
| MroXI | GAANNNNTTC | 2 cut(s) | 330, 506 |
| MscI | TGGCCA | 1 cut(s) | 675 |
| MseI | TTAA | 5 cut(s) | 339, 347, 456, 888, 928 |
| MslI | CAYNNNNRTG | 5 cut(s) | 215, 681, 711, 834, 837 |
| Msp20I | TGGCCA | 1 cut(s) | 675 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MunI | CAATTG | 1 cut(s) | 32 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 535 |
| NarI | GGCGCC | 2 cut(s) | 529, 843 |
| NcoI | CCATGG | 1 cut(s) | 816 |
| NdeII | GATC | 2 cut(s) | 369, 468 |
| NlaIII | CATG | 5 cut(s) | 64, 485, 680, 812, 820 |
| NlaIV | GGNNCC | 4 cut(s) | 281, 530, 688, 844 |
| NspI | RCATGY | 1 cut(s) | 64 |
| NspV | TTCGAA | 1 cut(s) | 877 |
| PagI | TCATGA | 1 cut(s) | 481 |
| PciI | ACATGT | 1 cut(s) | 60 |
| PdmI | GAANNNNTTC | 2 cut(s) | 330, 506 |
| PfeI | GAWTC | 4 cut(s) | 102, 115, 236, 447 |
| PkrI | GCNGC | 2 cut(s) | 181, 859 |
| PleI | GAGTC | 2 cut(s) | 214, 391 |
| PluTI | GGCGCC | 2 cut(s) | 532, 846 |
| PpsI | GAGTC | 2 cut(s) | 214, 391 |
| PscI | ACATGT | 1 cut(s) | 60 |
| Psp124BI | GAGCTC | 1 cut(s) | 489 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspEI | GGTNACC | 1 cut(s) | 602 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 4 cut(s) | 281, 530, 688, 844 |
| PspPI | GGNCC | 1 cut(s) | 575 |
| RseI | CAYNNNNRTG | 5 cut(s) | 215, 681, 711, 834, 837 |
| SacI | GAGCTC | 1 cut(s) | 489 |
| SaqAI | TTAA | 5 cut(s) | 339, 347, 456, 888, 928 |
| SatI | GCNGC | 2 cut(s) | 180, 858 |
| Sau3AI | GATC | 2 cut(s) | 369, 468 |
| Sau96I | GGNCC | 1 cut(s) | 575 |
| SchI | GAGTC | 2 cut(s) | 214, 391 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 1 cut(s) | 489 |
| SfaNI | GCATC | 3 cut(s) | 94, 367, 844 |
| SfoI | GGCGCC | 2 cut(s) | 530, 844 |
| SfuI | TTCGAA | 1 cut(s) | 877 |
| SinI | GGWCC | 1 cut(s) | 575 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 215, 681, 711, 834, 837 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 896 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 896 |
| Sse9I | AATT | 4 cut(s) | 17, 32, 353, 909 |
| SsiI | CCGC | 3 cut(s) | 79, 179, 607 |
| SspDI | GGCGCC | 2 cut(s) | 528, 842 |
| SspMI | CTAG | 3 cut(s) | 126, 786, 848 |
| SstI | GAGCTC | 1 cut(s) | 489 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| StyI | CCWWGG | 3 cut(s) | 785, 816, 847 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 2 cut(s) | 138, 646 |
| TaqI | TCGA | 4 cut(s) | 445, 450, 747, 877 |
| TasI | AATT | 4 cut(s) | 17, 32, 353, 909 |
| TauI | GCSGC | 1 cut(s) | 182 |
| TfiI | GAWTC | 4 cut(s) | 102, 115, 236, 447 |
| Tru1I | TTAA | 5 cut(s) | 339, 347, 456, 888, 928 |
| Tru9I | TTAA | 5 cut(s) | 339, 347, 456, 888, 928 |
| TscAI | CASTG | 2 cut(s) | 630, 769 |
| TseI | GCWGC | 1 cut(s) | 857 |
| TspDTI | ATGAA | 5 cut(s) | 17, 272, 276, 470, 515 |
| TspGWI | ACGGA | 1 cut(s) | 275 |
| TspRI | CASTG | 2 cut(s) | 630, 769 |
| VpaK11BI | GGWCC | 1 cut(s) | 575 |
| XapI | RAATTY | 2 cut(s) | 353, 909 |
| XceI | RCATGY | 1 cut(s) | 64 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 788, 836, 914 |
| XmaJI | CCTAGG | 2 cut(s) | 785, 847 |
| XmnI | GAANNNNTTC | 2 cut(s) | 330, 506 |
| XspI | CTAG | 3 cut(s) | 126, 786, 848 |