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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 692 |
| AccII | CGCG | 2 cut(s) | 179, 723 |
| AccIII | TCCGGA | 1 cut(s) | 271 |
| AciI | CCGC | 1 cut(s) | 301 |
| AclI | AACGTT | 1 cut(s) | 252 |
| AclWI | GGATC | 2 cut(s) | 97, 110 |
| AcsI | RAATTY | 1 cut(s) | 368 |
| AcyI | GRCGYC | 1 cut(s) | 693 |
| AfaI | GTAC | 2 cut(s) | 194, 733 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 64 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AflIII | ACRYGT | 1 cut(s) | 60 |
| AgsI | TTSAA | 1 cut(s) | 316 |
| AluBI | AGCT | 5 cut(s) | 24, 119, 140, 502, 524 |
| AluI | AGCT | 5 cut(s) | 24, 119, 140, 502, 524 |
| Alw21I | GWGCWC | 1 cut(s) | 631 |
| Alw26I | GTCTC | 2 cut(s) | 32, 436 |
| Alw44I | GTGCAC | 1 cut(s) | 627 |
| AlwI | GGATC | 2 cut(s) | 97, 110 |
| Aor13HI | TCCGGA | 1 cut(s) | 271 |
| ApaLI | GTGCAC | 1 cut(s) | 627 |
| ApeKI | GCWGC | 1 cut(s) | 238 |
| ApoI | RAATTY | 1 cut(s) | 368 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 345 |
| AspLEI | GCGC | 4 cut(s) | 81, 181, 695, 725 |
| AspS9I | GGNCC | 1 cut(s) | 208 |
| AvaII | GGWCC | 1 cut(s) | 208 |
| BaeGI | GKGCMC | 1 cut(s) | 631 |
| BamHI | GGATCC | 1 cut(s) | 102 |
| BanI | GGYRCC | 1 cut(s) | 692 |
| BbsI | GAAGAC | 2 cut(s) | 416, 764 |
| Bbv12I | GWGCWC | 1 cut(s) | 631 |
| BbvI | GCAGC | 1 cut(s) | 250 |
| BccI | CCATC | 3 cut(s) | 282, 358, 720 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 2 cut(s) | 32, 436 |
| BfaI | CTAG | 2 cut(s) | 35, 564 |
| BfoI | RGCGCY | 1 cut(s) | 696 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 1 cut(s) | 239 |
| BlsI | GCNGC | 1 cut(s) | 240 |
| Bme18I | GGWCC | 1 cut(s) | 208 |
| BmgT120I | GGNCC | 1 cut(s) | 208 |
| BmiI | GGNNCC | 6 cut(s) | 104, 210, 511, 635, 694, 750 |
| BmsI | GCATC | 4 cut(s) | 94, 470, 492, 754 |
| BpiI | GAAGAC | 2 cut(s) | 416, 764 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 13, 45 |
| BpuEI | CTTGAG | 1 cut(s) | 254 |
| BsaBI | GATNNNNATC | 1 cut(s) | 401 |
| BsaHI | GRCGYC | 1 cut(s) | 693 |
| BsaJI | CCNNGG | 2 cut(s) | 570, 699 |
| BsaWI | WCCGGW | 1 cut(s) | 271 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 64 |
| Bse8I | GATNNNNATC | 1 cut(s) | 401 |
| BseAI | TCCGGA | 1 cut(s) | 271 |
| BseDI | CCNNGG | 2 cut(s) | 570, 699 |
| BseGI | GGATG | 2 cut(s) | 485, 712 |
| BseJI | GATNNNNATC | 1 cut(s) | 401 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 64 |
| BseSI | GKGCMC | 1 cut(s) | 631 |
| BseXI | GCAGC | 1 cut(s) | 250 |
| BsgI | GTGCAG | 1 cut(s) | 69 |
| Bsh1236I | CGCG | 2 cut(s) | 179, 723 |
| BshNI | GGYRCC | 1 cut(s) | 692 |
| BsiHKAI | GWGCWC | 1 cut(s) | 631 |
| BsiSI | CCGG | 3 cut(s) | 272, 477, 678 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 64 |
| BsmAI | GTCTC | 2 cut(s) | 32, 436 |
| BsmBI | CGTCTC | 1 cut(s) | 436 |
| Bsp1286I | GDGCHC | 1 cut(s) | 631 |
| Bsp13I | TCCGGA | 1 cut(s) | 271 |
| Bsp143I | GATC | 3 cut(s) | 102, 402, 740 |
| BspACI | CCGC | 1 cut(s) | 301 |
| BspEI | TCCGGA | 1 cut(s) | 271 |
| BspFNI | CGCG | 2 cut(s) | 179, 723 |
| BspHI | TCATGA | 2 cut(s) | 156, 496 |
| BspLI | GGNNCC | 6 cut(s) | 104, 210, 511, 635, 694, 750 |
| BspPI | GGATC | 2 cut(s) | 97, 110 |
| BspQI | GCTCTTC | 1 cut(s) | 650 |
| BspT107I | GGYRCC | 1 cut(s) | 692 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BssECI | CCNNGG | 2 cut(s) | 570, 699 |
| BssMI | GATC | 3 cut(s) | 102, 402, 740 |
| BssNI | GRCGYC | 1 cut(s) | 693 |
| BssT1I | CCWWGG | 1 cut(s) | 699 |
| Bst4CI | ACNGT | 2 cut(s) | 222, 638 |
| Bst6I | CTCTTC | 2 cut(s) | 198, 650 |
| BstACI | GRCGYC | 1 cut(s) | 693 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 812 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 627 |
| BstDEI | CTNAG | 1 cut(s) | 728 |
| BstDSI | CCRYGG | 1 cut(s) | 570 |
| BstF5I | GGATG | 2 cut(s) | 485, 712 |
| BstFNI | CGCG | 2 cut(s) | 179, 723 |
| BstH2I | RGCGCY | 1 cut(s) | 696 |
| BstHHI | GCGC | 4 cut(s) | 81, 181, 695, 725 |
| BstKTI | GATC | 3 cut(s) | 105, 405, 743 |
| BstMAI | GTCTC | 2 cut(s) | 32, 436 |
| BstMBI | GATC | 3 cut(s) | 102, 402, 740 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 137, 666, 812 |
| BstNSI | RCATGY | 2 cut(s) | 64, 810 |
| BstSLI | GKGCMC | 1 cut(s) | 631 |
| BstUI | CGCG | 2 cut(s) | 179, 723 |
| BstV1I | GCAGC | 1 cut(s) | 250 |
| BstV2I | GAAGAC | 2 cut(s) | 416, 764 |
| BstX2I | RGATCY | 1 cut(s) | 102 |
| BstYI | RGATCY | 1 cut(s) | 102 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BtgI | CCRYGG | 1 cut(s) | 570 |
| BtsCI | GGATG | 2 cut(s) | 485, 712 |
| BtsIMutI | CAGTG | 1 cut(s) | 387 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 627 |
| CciI | TCATGA | 2 cut(s) | 156, 496 |
| CfoI | GCGC | 4 cut(s) | 81, 181, 695, 725 |
| Cfr13I | GGNCC | 1 cut(s) | 208 |
| CseI | GACGC | 1 cut(s) | 185 |
| Csp6I | GTAC | 2 cut(s) | 193, 732 |
| CviAII | CATG | 8 cut(s) | 61, 157, 169, 497, 514, 533, 758, 807 |
| CviQI | GTAC | 2 cut(s) | 193, 732 |
| DdeI | CTNAG | 1 cut(s) | 728 |
| DinI | GGCGCC | 1 cut(s) | 694 |
| DpnI | GATC | 3 cut(s) | 104, 404, 742 |
| DpnII | GATC | 3 cut(s) | 102, 402, 740 |
| Eam1104I | CTCTTC | 2 cut(s) | 198, 650 |
| EarI | CTCTTC | 2 cut(s) | 198, 650 |
| Eco130I | CCWWGG | 1 cut(s) | 699 |
| Eco47I | GGWCC | 1 cut(s) | 208 |
| EcoO109I | RGGNCCY | 1 cut(s) | 208 |
| EcoRI | GAATTC | 1 cut(s) | 368 |
| EcoT14I | CCWWGG | 1 cut(s) | 699 |
| EcoT22I | ATGCAT | 1 cut(s) | 485 |
| EgeI | GGCGCC | 1 cut(s) | 694 |
| EheI | GGCGCC | 1 cut(s) | 694 |
| ErhI | CCWWGG | 1 cut(s) | 699 |
| Esp3I | CGTCTC | 1 cut(s) | 436 |
| FaeI | CATG | 8 cut(s) | 64, 160, 172, 500, 517, 536, 761, 810 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FatI | CATG | 8 cut(s) | 60, 156, 168, 496, 513, 532, 757, 806 |
| Fnu4HI | GCNGC | 1 cut(s) | 239 |
| FokI | GGATG | 2 cut(s) | 492, 699 |
| Fsp4HI | GCNGC | 1 cut(s) | 239 |
| FspBI | CTAG | 2 cut(s) | 35, 564 |
| GlaI | GCGC | 4 cut(s) | 80, 180, 694, 724 |
| GluI | GCNGC | 1 cut(s) | 239 |
| HaeII | RGCGCY | 1 cut(s) | 696 |
| HapII | CCGG | 3 cut(s) | 272, 477, 678 |
| HgaI | GACGC | 1 cut(s) | 185 |
| HhaI | GCGC | 4 cut(s) | 81, 181, 695, 725 |
| Hin1I | GRCGYC | 1 cut(s) | 693 |
| Hin1II | CATG | 8 cut(s) | 64, 160, 172, 500, 517, 536, 761, 810 |
| Hin6I | GCGC | 4 cut(s) | 79, 179, 693, 723 |
| HinP1I | GCGC | 4 cut(s) | 79, 179, 693, 723 |
| HinfI | GANTC | 2 cut(s) | 412, 593 |
| HpaII | CCGG | 3 cut(s) | 272, 477, 678 |
| Hpy166II | GTNNAC | 1 cut(s) | 629 |
| Hpy188I | TCNGA | 3 cut(s) | 340, 462, 791 |
| Hpy188III | TCNNGA | 7 cut(s) | 157, 257, 272, 406, 497, 564, 590 |
| Hpy8I | GTNNAC | 1 cut(s) | 629 |
| HpyCH4III | ACNGT | 2 cut(s) | 222, 638 |
| HpyCH4IV | ACGT | 1 cut(s) | 252 |
| HpyCH4V | TGCA | 5 cut(s) | 50, 437, 483, 629, 815 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 137, 666, 812 |
| HpyF3I | CTNAG | 1 cut(s) | 728 |
| HpySE526I | ACGT | 1 cut(s) | 252 |
| Hsp92I | GRCGYC | 1 cut(s) | 693 |
| Hsp92II | CATG | 8 cut(s) | 64, 160, 172, 500, 517, 536, 761, 810 |
| HspAI | GCGC | 4 cut(s) | 79, 179, 693, 723 |
| KasI | GGCGCC | 1 cut(s) | 692 |
| Kpn2I | TCCGGA | 1 cut(s) | 271 |
| Kzo9I | GATC | 3 cut(s) | 102, 402, 740 |
| LguI | GCTCTTC | 1 cut(s) | 650 |
| LmnI | GCTCC | 4 cut(s) | 34, 186, 509, 748 |
| LpnPI | CCDG | 9 cut(s) | 23, 30, 36, 95, 285, 490, 575, 691, 765 |
| Lsp1109I | GCAGC | 1 cut(s) | 250 |
| LweI | GCATC | 4 cut(s) | 94, 470, 492, 754 |
| MaeI | CTAG | 2 cut(s) | 35, 564 |
| MaeII | ACGT | 1 cut(s) | 252 |
| MaeIII | GTNAC | 2 cut(s) | 5, 257 |
| MalI | GATC | 3 cut(s) | 104, 404, 742 |
| MboI | GATC | 3 cut(s) | 102, 402, 740 |
| MboII | GAAGA | 6 cut(s) | 215, 415, 421, 562, 667, 764 |
| MflI | RGATCY | 1 cut(s) | 102 |
| MhlI | GDGCHC | 1 cut(s) | 631 |
| MluCI | AATT | 4 cut(s) | 150, 334, 368, 585 |
| Mly113I | GGCGCC | 1 cut(s) | 693 |
| MlyI | GAGTC | 2 cut(s) | 406, 587 |
| MnlI | CCTC | 8 cut(s) | 121, 199, 206, 308, 635, 659, 685, 747 |
| Mph1103I | ATGCAT | 1 cut(s) | 485 |
| MroI | TCCGGA | 1 cut(s) | 271 |
| MroXI | GAANNNNTTC | 1 cut(s) | 345 |
| MseI | TTAA | 3 cut(s) | 90, 354, 450 |
| MslI | CAYNNNNRTG | 3 cut(s) | 171, 545, 762 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspI | CCGG | 3 cut(s) | 272, 477, 678 |
| MvnI | CGCG | 2 cut(s) | 179, 723 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 137, 666, 812 |
| NarI | GGCGCC | 1 cut(s) | 693 |
| NdeII | GATC | 3 cut(s) | 102, 402, 740 |
| NlaIII | CATG | 8 cut(s) | 64, 160, 172, 500, 517, 536, 761, 810 |
| NlaIV | GGNNCC | 6 cut(s) | 104, 210, 511, 635, 694, 750 |
| NmuCI | GTSAC | 1 cut(s) | 257 |
| NsiI | ATGCAT | 1 cut(s) | 485 |
| NspI | RCATGY | 2 cut(s) | 64, 810 |
| PagI | TCATGA | 2 cut(s) | 156, 496 |
| PciI | ACATGT | 1 cut(s) | 60 |
| PciSI | GCTCTTC | 1 cut(s) | 650 |
| PdmI | GAANNNNTTC | 1 cut(s) | 345 |
| PkrI | GCNGC | 1 cut(s) | 240 |
| PleI | GAGTC | 2 cut(s) | 406, 587 |
| PluTI | GGCGCC | 1 cut(s) | 696 |
| PpsI | GAGTC | 2 cut(s) | 406, 587 |
| PpuMI | RGGWCCY | 1 cut(s) | 208 |
| PscI | ACATGT | 1 cut(s) | 60 |
| Psp1406I | AACGTT | 1 cut(s) | 252 |
| Psp5II | RGGWCCY | 1 cut(s) | 208 |
| PspN4I | GGNNCC | 6 cut(s) | 104, 210, 511, 635, 694, 750 |
| PspPI | GGNCC | 1 cut(s) | 208 |
| PspPPI | RGGWCCY | 1 cut(s) | 208 |
| PsuI | RGATCY | 1 cut(s) | 102 |
| RsaI | GTAC | 2 cut(s) | 194, 733 |
| RsaNI | GTAC | 2 cut(s) | 193, 732 |
| RseI | CAYNNNNRTG | 3 cut(s) | 171, 545, 762 |
| SapI | GCTCTTC | 1 cut(s) | 650 |
| SaqAI | TTAA | 3 cut(s) | 90, 354, 450 |
| SatI | GCNGC | 1 cut(s) | 239 |
| Sau3AI | GATC | 3 cut(s) | 102, 402, 740 |
| Sau96I | GGNCC | 1 cut(s) | 208 |
| SchI | GAGTC | 2 cut(s) | 406, 587 |
| SduI | GDGCHC | 1 cut(s) | 631 |
| SfaNI | GCATC | 4 cut(s) | 94, 470, 492, 754 |
| SfoI | GGCGCC | 1 cut(s) | 694 |
| SinI | GGWCC | 1 cut(s) | 208 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 171, 545, 762 |
| SmlI | CTYRAG | 2 cut(s) | 89, 233 |
| SmoI | CTYRAG | 2 cut(s) | 89, 233 |
| Sse9I | AATT | 4 cut(s) | 150, 334, 368, 585 |
| SsiI | CCGC | 1 cut(s) | 301 |
| SspDI | GGCGCC | 1 cut(s) | 692 |
| SspMI | CTAG | 2 cut(s) | 35, 564 |
| StyI | CCWWGG | 1 cut(s) | 699 |
| TaaI | ACNGT | 2 cut(s) | 222, 638 |
| TaiI | ACGT | 1 cut(s) | 255 |
| TaqI | TCGA | 2 cut(s) | 405, 739 |
| TasI | AATT | 4 cut(s) | 150, 334, 368, 585 |
| Tru1I | TTAA | 3 cut(s) | 90, 354, 450 |
| Tru9I | TTAA | 3 cut(s) | 90, 354, 450 |
| TscAI | CASTG | 1 cut(s) | 394 |
| TseFI | GTSAC | 1 cut(s) | 257 |
| TseI | GCWGC | 1 cut(s) | 238 |
| Tsp45I | GTSAC | 1 cut(s) | 257 |
| TspDTI | ATGAA | 5 cut(s) | 150, 185, 216, 485, 530 |
| TspGWI | ACGGA | 1 cut(s) | 646 |
| TspRI | CASTG | 1 cut(s) | 394 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VneI | GTGCAC | 1 cut(s) | 627 |
| VpaK11BI | GGWCC | 1 cut(s) | 208 |
| XapI | RAATTY | 1 cut(s) | 368 |
| XbaI | TCTAGA | 1 cut(s) | 563 |
| XceI | RCATGY | 2 cut(s) | 64, 810 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 219 |
| XmnI | GAANNNNTTC | 1 cut(s) | 345 |
| XspI | CTAG | 2 cut(s) | 35, 564 |
| Zsp2I | ATGCAT | 1 cut(s) | 485 |