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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 117 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 180, 533 |
| AatII | GACGTC | 2 cut(s) | 390, 537 |
| AccBSI | CCGCTC | 1 cut(s) | 145 |
| AciI | CCGC | 2 cut(s) | 145, 588 |
| AcyI | GRCGYC | 2 cut(s) | 387, 534 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 132, 202, 289, 329 |
| AflIII | ACRYGT | 1 cut(s) | 175 |
| AgsI | TTSAA | 3 cut(s) | 78, 424, 559 |
| AjiI | CACGTC | 1 cut(s) | 176 |
| AluBI | AGCT | 2 cut(s) | 16, 38 |
| AluI | AGCT | 2 cut(s) | 16, 38 |
| Alw21I | GWGCWC | 2 cut(s) | 235, 349 |
| Alw44I | GTGCAC | 1 cut(s) | 345 |
| AoxI | GGCC | 2 cut(s) | 80, 291 |
| ApaLI | GTGCAC | 1 cut(s) | 345 |
| ApeKI | GCWGC | 1 cut(s) | 275 |
| AspA2I | CCTAGG | 1 cut(s) | 326 |
| AspLEI | GCGC | 1 cut(s) | 275 |
| AspS9I | GGNCC | 1 cut(s) | 182 |
| AsuHPI | GGTGA | 2 cut(s) | 121, 535 |
| AvaII | GGWCC | 1 cut(s) | 182 |
| AvrII | CCTAGG | 1 cut(s) | 326 |
| BaeGI | GKGCMC | 1 cut(s) | 349 |
| BbsI | GAAGAC | 1 cut(s) | 576 |
| Bbv12I | GWGCWC | 2 cut(s) | 235, 349 |
| BbvI | GCAGC | 1 cut(s) | 262 |
| BccI | CCATC | 2 cut(s) | 257, 512 |
| BceAI | ACGGC | 1 cut(s) | 267 |
| BfaI | CTAG | 1 cut(s) | 327 |
| BfmI | CTRYAG | 1 cut(s) | 33 |
| BfoI | RGCGCY | 1 cut(s) | 276 |
| BisI | GCNGC | 2 cut(s) | 276, 588 |
| BlnI | CCTAGG | 1 cut(s) | 326 |
| BlsI | GCNGC | 2 cut(s) | 277, 589 |
| Bme18I | GGWCC | 1 cut(s) | 182 |
| BmgBI | CACGTC | 1 cut(s) | 176 |
| BmgT120I | GGNCC | 1 cut(s) | 182 |
| BmiI | GGNNCC | 2 cut(s) | 149, 183 |
| BmsI | GCATC | 3 cut(s) | 324, 343, 574 |
| BpiI | GAAGAC | 1 cut(s) | 576 |
| BpmI | CTGGAG | 1 cut(s) | 243 |
| BpuEI | CTTGAG | 1 cut(s) | 499 |
| BsaHI | GRCGYC | 2 cut(s) | 387, 534 |
| BsaJI | CCNNGG | 3 cut(s) | 283, 297, 326 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 250, 280 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 132, 202, 289, 329 |
| Bse1I | ACTGG | 1 cut(s) | 226 |
| Bse3DI | GCAATG | 1 cut(s) | 439 |
| BseDI | CCNNGG | 3 cut(s) | 283, 297, 326 |
| BseGI | GGATG | 1 cut(s) | 589 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 132, 202, 289, 329 |
| BseMI | GCAATG | 1 cut(s) | 439 |
| BseNI | ACTGG | 1 cut(s) | 226 |
| BseSI | GKGCMC | 1 cut(s) | 349 |
| BseXI | GCAGC | 1 cut(s) | 262 |
| BshFI | GGCC | 2 cut(s) | 82, 293 |
| BsiHKAI | GWGCWC | 2 cut(s) | 235, 349 |
| BslFI | GGGAC | 3 cut(s) | 177, 345, 488 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 132, 202, 289, 329 |
| BsmFI | GGGAC | 3 cut(s) | 177, 345, 488 |
| BsnI | GGCC | 2 cut(s) | 82, 293 |
| Bsp1286I | GDGCHC | 2 cut(s) | 235, 349 |
| Bsp19I | CCATGG | 1 cut(s) | 297 |
| BspACI | CCGC | 2 cut(s) | 145, 588 |
| BspANI | GGCC | 2 cut(s) | 82, 293 |
| BspHI | TCATGA | 1 cut(s) | 103 |
| BspLI | GGNNCC | 2 cut(s) | 149, 183 |
| BsrBI | CCGCTC | 1 cut(s) | 145 |
| BsrDI | GCAATG | 1 cut(s) | 439 |
| BsrI | ACTGG | 1 cut(s) | 226 |
| BssECI | CCNNGG | 3 cut(s) | 283, 297, 326 |
| BssNI | GRCGYC | 2 cut(s) | 387, 534 |
| BssT1I | CCWWGG | 2 cut(s) | 297, 326 |
| BstACI | GRCGYC | 2 cut(s) | 387, 534 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 353 |
| BstC8I | GCNNGC | 2 cut(s) | 280, 439 |
| BstDEI | CTNAG | 3 cut(s) | 39, 93, 395 |
| BstDSI | CCRYGG | 2 cut(s) | 283, 297 |
| BstF5I | GGATG | 1 cut(s) | 589 |
| BstH2I | RGCGCY | 1 cut(s) | 276 |
| BstHHI | GCGC | 1 cut(s) | 275 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 279, 353, 438, 500 |
| BstSFI | CTRYAG | 1 cut(s) | 33 |
| BstSLI | GKGCMC | 1 cut(s) | 349 |
| BstV1I | GCAGC | 1 cut(s) | 262 |
| BstV2I | GAAGAC | 1 cut(s) | 576 |
| BsuRI | GGCC | 2 cut(s) | 82, 293 |
| BtgI | CCRYGG | 2 cut(s) | 283, 297 |
| BtrI | CACGTC | 1 cut(s) | 176 |
| BtsCI | GGATG | 1 cut(s) | 589 |
| Cac8I | GCNNGC | 2 cut(s) | 280, 439 |
| CciI | TCATGA | 1 cut(s) | 103 |
| CfoI | GCGC | 1 cut(s) | 275 |
| Cfr13I | GGNCC | 1 cut(s) | 182 |
| CviAII | CATG | 6 cut(s) | 47, 104, 236, 254, 298, 580 |
| CviJI | RGCY | 7 cut(s) | 16, 38, 82, 282, 293, 452, 494 |
| CviKI_1 | RGCY | 7 cut(s) | 16, 38, 82, 282, 293, 452, 494 |
| DdeI | CTNAG | 3 cut(s) | 39, 93, 395 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 180, 533 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 180, 533 |
| Eco130I | CCWWGG | 2 cut(s) | 297, 326 |
| Eco147I | AGGCCT | 1 cut(s) | 82 |
| Eco47I | GGWCC | 1 cut(s) | 182 |
| EcoT14I | CCWWGG | 2 cut(s) | 297, 326 |
| ErhI | CCWWGG | 2 cut(s) | 297, 326 |
| FaeI | CATG | 6 cut(s) | 50, 107, 239, 257, 301, 583 |
| FaqI | GGGAC | 3 cut(s) | 177, 345, 488 |
| FatI | CATG | 6 cut(s) | 46, 103, 235, 253, 297, 579 |
| FauNDI | CATATG | 1 cut(s) | 187 |
| Fnu4HI | GCNGC | 2 cut(s) | 276, 588 |
| FokI | GGATG | 1 cut(s) | 596 |
| Fsp4HI | GCNGC | 2 cut(s) | 276, 588 |
| FspBI | CTAG | 1 cut(s) | 327 |
| GlaI | GCGC | 1 cut(s) | 274 |
| GluI | GCNGC | 2 cut(s) | 276, 588 |
| GsuI | CTGGAG | 1 cut(s) | 243 |
| HaeII | RGCGCY | 1 cut(s) | 276 |
| HaeIII | GGCC | 2 cut(s) | 82, 293 |
| HhaI | GCGC | 1 cut(s) | 275 |
| Hin1I | GRCGYC | 2 cut(s) | 387, 534 |
| Hin1II | CATG | 6 cut(s) | 50, 107, 239, 257, 301, 583 |
| Hin6I | GCGC | 1 cut(s) | 273 |
| HinP1I | GCGC | 1 cut(s) | 273 |
| HphI | GGTGA | 2 cut(s) | 121, 535 |
| Hpy166II | GTNNAC | 1 cut(s) | 347 |
| Hpy188III | TCNNGA | 2 cut(s) | 64, 104 |
| Hpy8I | GTNNAC | 1 cut(s) | 347 |
| HpyAV | CCTTC | 1 cut(s) | 200 |
| HpyCH4IV | ACGT | 4 cut(s) | 175, 387, 467, 534 |
| HpyCH4V | TGCA | 5 cut(s) | 138, 347, 356, 432, 437 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 279, 353, 438, 500 |
| HpyF3I | CTNAG | 3 cut(s) | 39, 93, 395 |
| HpySE526I | ACGT | 4 cut(s) | 175, 387, 467, 534 |
| Hsp92I | GRCGYC | 2 cut(s) | 387, 534 |
| Hsp92II | CATG | 6 cut(s) | 50, 107, 239, 257, 301, 583 |
| HspAI | GCGC | 1 cut(s) | 273 |
| LmnI | GCTCC | 2 cut(s) | 142, 230 |
| LpnPI | CCDG | 3 cut(s) | 96, 207, 292 |
| Lsp1109I | GCAGC | 1 cut(s) | 262 |
| LweI | GCATC | 3 cut(s) | 324, 343, 574 |
| MaeI | CTAG | 1 cut(s) | 327 |
| MaeII | ACGT | 4 cut(s) | 175, 387, 467, 534 |
| MbiI | CCGCTC | 1 cut(s) | 145 |
| MboII | GAAGA | 1 cut(s) | 581 |
| MhlI | GDGCHC | 2 cut(s) | 235, 349 |
| MluCI | AATT | 5 cut(s) | 67, 73, 112, 211, 362 |
| MmeI | TCCRAC | 1 cut(s) | 67 |
| MnlI | CCTC | 4 cut(s) | 100, 125, 220, 369 |
| MseI | TTAA | 1 cut(s) | 365 |
| MslI | CAYNNNNRTG | 1 cut(s) | 582 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 279, 353, 438, 500 |
| NcoI | CCATGG | 1 cut(s) | 297 |
| NdeI | CATATG | 1 cut(s) | 187 |
| NlaIII | CATG | 6 cut(s) | 50, 107, 239, 257, 301, 583 |
| NlaIV | GGNNCC | 2 cut(s) | 149, 183 |
| PagI | TCATGA | 1 cut(s) | 103 |
| PceI | AGGCCT | 1 cut(s) | 82 |
| PkrI | GCNGC | 2 cut(s) | 277, 589 |
| PsiI | TTATAA | 1 cut(s) | 117 |
| PspN4I | GGNNCC | 2 cut(s) | 149, 183 |
| PspPI | GGNCC | 1 cut(s) | 182 |
| RseI | CAYNNNNRTG | 1 cut(s) | 582 |
| SaqAI | TTAA | 1 cut(s) | 365 |
| SatI | GCNGC | 2 cut(s) | 276, 588 |
| Sau96I | GGNCC | 1 cut(s) | 182 |
| SduI | GDGCHC | 2 cut(s) | 235, 349 |
| SfaNI | GCATC | 3 cut(s) | 324, 343, 574 |
| SfcI | CTRYAG | 1 cut(s) | 33 |
| SinI | GGWCC | 1 cut(s) | 182 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 582 |
| SmlI | CTYRAG | 1 cut(s) | 478 |
| SmoI | CTYRAG | 1 cut(s) | 478 |
| Sse9I | AATT | 5 cut(s) | 67, 73, 112, 211, 362 |
| SseBI | AGGCCT | 1 cut(s) | 82 |
| SsiI | CCGC | 2 cut(s) | 145, 588 |
| SspMI | CTAG | 1 cut(s) | 327 |
| StuI | AGGCCT | 1 cut(s) | 82 |
| StyI | CCWWGG | 2 cut(s) | 297, 326 |
| TaiI | ACGT | 4 cut(s) | 178, 390, 470, 537 |
| TasI | AATT | 5 cut(s) | 67, 73, 112, 211, 362 |
| TauI | GCSGC | 1 cut(s) | 590 |
| Tru1I | TTAA | 1 cut(s) | 365 |
| Tru9I | TTAA | 1 cut(s) | 365 |
| TseI | GCWGC | 1 cut(s) | 275 |
| TspDTI | ATGAA | 1 cut(s) | 92 |
| TspGWI | ACGGA | 1 cut(s) | 186 |
| VneI | GTGCAC | 1 cut(s) | 345 |
| VpaK11BI | GGWCC | 1 cut(s) | 182 |
| XmaJI | CCTAGG | 1 cut(s) | 326 |
| XspI | CTAG | 1 cut(s) | 327 |
| ZraI | GACGTC | 2 cut(s) | 388, 535 |