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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 156 |
| AccB1I | GGYRCC | 2 cut(s) | 111, 269 |
| AccII | CGCG | 2 cut(s) | 96, 302 |
| AccIII | TCCGGA | 1 cut(s) | 76 |
| AclWI | GGATC | 1 cut(s) | 48 |
| AcoI | YGGCCR | 1 cut(s) | 256 |
| AcyI | GRCGYC | 2 cut(s) | 112, 270 |
| AflIII | ACRYGT | 1 cut(s) | 300 |
| AgsI | TTSAA | 1 cut(s) | 307 |
| AluBI | AGCT | 2 cut(s) | 392, 443 |
| AluI | AGCT | 2 cut(s) | 392, 443 |
| Alw21I | GWGCWC | 1 cut(s) | 394 |
| AlwI | GGATC | 1 cut(s) | 48 |
| Aor13HI | TCCGGA | 1 cut(s) | 76 |
| AoxI | GGCC | 1 cut(s) | 256 |
| AspLEI | GCGC | 3 cut(s) | 98, 114, 272 |
| AspS9I | GGNCC | 1 cut(s) | 158 |
| AvaII | GGWCC | 1 cut(s) | 158 |
| BaeGI | GKGCMC | 1 cut(s) | 379 |
| BalI | TGGCCA | 1 cut(s) | 258 |
| BanI | GGYRCC | 2 cut(s) | 111, 269 |
| BanII | GRGCYC | 1 cut(s) | 394 |
| BauI | CACGAG | 1 cut(s) | 393 |
| Bbv12I | GWGCWC | 1 cut(s) | 394 |
| BccI | CCATC | 1 cut(s) | 297 |
| BciVI | GTATCC | 1 cut(s) | 133 |
| BclI | TGATCA | 1 cut(s) | 367 |
| BfaI | CTAG | 1 cut(s) | 479 |
| BfoI | RGCGCY | 2 cut(s) | 115, 273 |
| BfuI | GTATCC | 1 cut(s) | 133 |
| Bme18I | GGWCC | 1 cut(s) | 158 |
| BmgT120I | GGNCC | 1 cut(s) | 158 |
| BmiI | GGNNCC | 3 cut(s) | 113, 212, 271 |
| BsaHI | GRCGYC | 2 cut(s) | 112, 270 |
| BsaJI | CCNNGG | 1 cut(s) | 57 |
| BsaWI | WCCGGW | 1 cut(s) | 76 |
| BseAI | TCCGGA | 1 cut(s) | 76 |
| BseDI | CCNNGG | 1 cut(s) | 57 |
| BseGI | GGATG | 1 cut(s) | 27 |
| BseSI | GKGCMC | 1 cut(s) | 379 |
| Bsh1236I | CGCG | 2 cut(s) | 96, 302 |
| BshFI | GGCC | 1 cut(s) | 258 |
| BshNI | GGYRCC | 2 cut(s) | 111, 269 |
| BsiHKAI | GWGCWC | 1 cut(s) | 394 |
| BsiSI | CCGG | 1 cut(s) | 77 |
| BsnI | GGCC | 1 cut(s) | 258 |
| Bsp1286I | GDGCHC | 2 cut(s) | 379, 394 |
| Bsp13I | TCCGGA | 1 cut(s) | 76 |
| Bsp143I | GATC | 3 cut(s) | 53, 367, 475 |
| BspANI | GGCC | 1 cut(s) | 258 |
| BspEI | TCCGGA | 1 cut(s) | 76 |
| BspFNI | CGCG | 2 cut(s) | 96, 302 |
| BspLI | GGNNCC | 3 cut(s) | 113, 212, 271 |
| BspPI | GGATC | 1 cut(s) | 48 |
| BspT107I | GGYRCC | 2 cut(s) | 111, 269 |
| BssECI | CCNNGG | 1 cut(s) | 57 |
| BssMI | GATC | 3 cut(s) | 53, 367, 475 |
| BssNI | GRCGYC | 2 cut(s) | 112, 270 |
| BssSI | CACGAG | 1 cut(s) | 393 |
| Bst2BI | CACGAG | 1 cut(s) | 393 |
| BstACI | GRCGYC | 2 cut(s) | 112, 270 |
| BstDEI | CTNAG | 2 cut(s) | 134, 282 |
| BstDSI | CCRYGG | 1 cut(s) | 57 |
| BstF5I | GGATG | 1 cut(s) | 27 |
| BstFNI | CGCG | 2 cut(s) | 96, 302 |
| BstH2I | RGCGCY | 2 cut(s) | 115, 273 |
| BstHHI | GCGC | 3 cut(s) | 98, 114, 272 |
| BstKTI | GATC | 3 cut(s) | 56, 370, 478 |
| BstMBI | GATC | 3 cut(s) | 53, 367, 475 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 118, 419, 440 |
| BstSLI | GKGCMC | 1 cut(s) | 379 |
| BstUI | CGCG | 2 cut(s) | 96, 302 |
| BstX2I | RGATCY | 1 cut(s) | 53 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 266 |
| BstYI | RGATCY | 1 cut(s) | 53 |
| BsuI | GTATCC | 1 cut(s) | 133 |
| BsuRI | GGCC | 1 cut(s) | 258 |
| BtgI | CCRYGG | 1 cut(s) | 57 |
| BtgZI | GCGATG | 1 cut(s) | 394 |
| BtsCI | GGATG | 1 cut(s) | 27 |
| CfoI | GCGC | 3 cut(s) | 98, 114, 272 |
| Cfr13I | GGNCC | 1 cut(s) | 158 |
| CseI | GACGC | 1 cut(s) | 308 |
| CviAII | CATG | 2 cut(s) | 20, 260 |
| CviJI | RGCY | 4 cut(s) | 258, 313, 392, 443 |
| CviKI_1 | RGCY | 4 cut(s) | 258, 313, 392, 443 |
| DdeI | CTNAG | 2 cut(s) | 134, 282 |
| DinI | GGCGCC | 2 cut(s) | 113, 271 |
| DpnI | GATC | 3 cut(s) | 55, 369, 477 |
| DpnII | GATC | 3 cut(s) | 53, 367, 475 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 156 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 156 |
| EaeI | YGGCCR | 1 cut(s) | 256 |
| Ecl136II | GAGCTC | 1 cut(s) | 392 |
| Eco24I | GRGCYC | 1 cut(s) | 394 |
| Eco47I | GGWCC | 1 cut(s) | 158 |
| Eco53kI | GAGCTC | 1 cut(s) | 392 |
| EcoICRI | GAGCTC | 1 cut(s) | 392 |
| EcoT38I | GRGCYC | 1 cut(s) | 394 |
| EgeI | GGCGCC | 2 cut(s) | 113, 271 |
| EheI | GGCGCC | 2 cut(s) | 113, 271 |
| FaeI | CATG | 2 cut(s) | 23, 263 |
| FatI | CATG | 2 cut(s) | 19, 259 |
| FbaI | TGATCA | 1 cut(s) | 367 |
| FokI | GGATG | 1 cut(s) | 14 |
| FriOI | GRGCYC | 1 cut(s) | 394 |
| FspBI | CTAG | 1 cut(s) | 479 |
| GlaI | GCGC | 3 cut(s) | 97, 113, 271 |
| HaeII | RGCGCY | 2 cut(s) | 115, 273 |
| HaeIII | GGCC | 1 cut(s) | 258 |
| HapII | CCGG | 1 cut(s) | 77 |
| HgaI | GACGC | 1 cut(s) | 308 |
| HhaI | GCGC | 3 cut(s) | 98, 114, 272 |
| Hin1I | GRCGYC | 2 cut(s) | 112, 270 |
| Hin1II | CATG | 2 cut(s) | 23, 263 |
| Hin6I | GCGC | 3 cut(s) | 96, 112, 270 |
| HinP1I | GCGC | 3 cut(s) | 96, 112, 270 |
| HincII | GTYRAC | 1 cut(s) | 224 |
| HindII | GTYRAC | 1 cut(s) | 224 |
| HinfI | GANTC | 1 cut(s) | 80 |
| HpaII | CCGG | 1 cut(s) | 77 |
| Hpy166II | GTNNAC | 1 cut(s) | 224 |
| Hpy188I | TCNGA | 1 cut(s) | 367 |
| Hpy188III | TCNNGA | 7 cut(s) | 51, 77, 147, 351, 395, 467, 479 |
| Hpy8I | GTNNAC | 1 cut(s) | 224 |
| HpyAV | CCTTC | 1 cut(s) | 176 |
| HpyCH4IV | ACGT | 2 cut(s) | 151, 226 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 118, 419, 440 |
| HpyF3I | CTNAG | 2 cut(s) | 134, 282 |
| HpySE526I | ACGT | 2 cut(s) | 151, 226 |
| Hsp92I | GRCGYC | 2 cut(s) | 112, 270 |
| Hsp92II | CATG | 2 cut(s) | 23, 263 |
| HspAI | GCGC | 3 cut(s) | 96, 112, 270 |
| KasI | GGCGCC | 2 cut(s) | 111, 269 |
| Kpn2I | TCCGGA | 1 cut(s) | 76 |
| Ksp22I | TGATCA | 1 cut(s) | 367 |
| Kzo9I | GATC | 3 cut(s) | 53, 367, 475 |
| LpnPI | CCDG | 4 cut(s) | 90, 132, 141, 240 |
| MaeI | CTAG | 1 cut(s) | 479 |
| MaeII | ACGT | 2 cut(s) | 151, 226 |
| MalI | GATC | 3 cut(s) | 55, 369, 477 |
| MboI | GATC | 3 cut(s) | 53, 367, 475 |
| MboII | GAAGA | 3 cut(s) | 49, 410, 482 |
| MflI | RGATCY | 1 cut(s) | 53 |
| MhlI | GDGCHC | 2 cut(s) | 379, 394 |
| MlsI | TGGCCA | 1 cut(s) | 258 |
| MluCI | AATT | 3 cut(s) | 46, 85, 402 |
| MluI | ACGCGT | 1 cut(s) | 300 |
| MluNI | TGGCCA | 1 cut(s) | 258 |
| Mly113I | GGCGCC | 2 cut(s) | 112, 270 |
| MnlI | CCTC | 5 cut(s) | 101, 232, 236, 262, 324 |
| Mox20I | TGGCCA | 1 cut(s) | 258 |
| MroI | TCCGGA | 1 cut(s) | 76 |
| MscI | TGGCCA | 1 cut(s) | 258 |
| MslI | CAYNNNNRTG | 3 cut(s) | 32, 264, 294 |
| Msp20I | TGGCCA | 1 cut(s) | 258 |
| MspI | CCGG | 1 cut(s) | 77 |
| MvnI | CGCG | 2 cut(s) | 96, 302 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 118, 419, 440 |
| NarI | GGCGCC | 2 cut(s) | 112, 270 |
| NdeII | GATC | 3 cut(s) | 53, 367, 475 |
| NlaIII | CATG | 2 cut(s) | 23, 263 |
| NlaIV | GGNNCC | 3 cut(s) | 113, 212, 271 |
| PfeI | GAWTC | 1 cut(s) | 80 |
| PluTI | GGCGCC | 2 cut(s) | 115, 273 |
| Psp124BI | GAGCTC | 1 cut(s) | 394 |
| PspN4I | GGNNCC | 3 cut(s) | 113, 212, 271 |
| PspPI | GGNCC | 1 cut(s) | 158 |
| PsuI | RGATCY | 1 cut(s) | 53 |
| RseI | CAYNNNNRTG | 3 cut(s) | 32, 264, 294 |
| SacI | GAGCTC | 1 cut(s) | 394 |
| Sau3AI | GATC | 3 cut(s) | 53, 367, 475 |
| Sau96I | GGNCC | 1 cut(s) | 158 |
| SduI | GDGCHC | 2 cut(s) | 379, 394 |
| SetI | ASST | 6 cut(s) | 154, 187, 223, 229, 394, 445 |
| SfoI | GGCGCC | 2 cut(s) | 113, 271 |
| SinI | GGWCC | 1 cut(s) | 158 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 32, 264, 294 |
| Sse9I | AATT | 3 cut(s) | 46, 85, 402 |
| SspDI | GGCGCC | 2 cut(s) | 111, 269 |
| SspMI | CTAG | 1 cut(s) | 479 |
| SstI | GAGCTC | 1 cut(s) | 394 |
| TaiI | ACGT | 2 cut(s) | 154, 229 |
| TaqI | TCGA | 2 cut(s) | 50, 352 |
| TasI | AATT | 3 cut(s) | 46, 85, 402 |
| TfiI | GAWTC | 1 cut(s) | 80 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 2 cut(s) | 46, 223 |
| VpaK11BI | GGWCC | 1 cut(s) | 158 |
| XbaI | TCTAGA | 1 cut(s) | 478 |
| XspI | CTAG | 1 cut(s) | 479 |