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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 591 |
| AccB1I | GGYRCC | 2 cut(s) | 546, 704 |
| AccII | CGCG | 1 cut(s) | 318 |
| AccIII | TCCGGA | 1 cut(s) | 511 |
| AciI | CCGC | 4 cut(s) | 79, 316, 361, 846 |
| AclWI | GGATC | 3 cut(s) | 413, 483, 715 |
| AcoI | YGGCCR | 1 cut(s) | 691 |
| AcyI | GRCGYC | 2 cut(s) | 547, 705 |
| AdeI | CACNNNGTG | 1 cut(s) | 886 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AgsI | TTSAA | 3 cut(s) | 109, 376, 742 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AluBI | AGCT | 8 cut(s) | 48, 155, 161, 424, 434, 737, 827, 878 |
| AluI | AGCT | 8 cut(s) | 48, 155, 161, 424, 434, 737, 827, 878 |
| Alw21I | GWGCWC | 2 cut(s) | 426, 829 |
| Alw26I | GTCTC | 1 cut(s) | 292 |
| AlwI | GGATC | 3 cut(s) | 413, 483, 715 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| Aor13HI | TCCGGA | 1 cut(s) | 511 |
| AoxI | GGCC | 2 cut(s) | 93, 691 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| AspLEI | GCGC | 3 cut(s) | 549, 707, 748 |
| AsuHPI | GGTGA | 1 cut(s) | 835 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BaeGI | GKGCMC | 1 cut(s) | 814 |
| BalI | TGGCCA | 1 cut(s) | 693 |
| BanI | GGYRCC | 2 cut(s) | 546, 704 |
| BanII | GRGCYC | 2 cut(s) | 426, 829 |
| BauI | CACGAG | 1 cut(s) | 828 |
| BbsI | GAAGAC | 1 cut(s) | 273 |
| Bbv12I | GWGCWC | 2 cut(s) | 426, 829 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 3 cut(s) | 92, 342, 732 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 377, 411 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BciVI | GTATCC | 1 cut(s) | 568 |
| BclI | TGATCA | 1 cut(s) | 802 |
| BcoDI | GTCTC | 1 cut(s) | 292 |
| BfaI | CTAG | 4 cut(s) | 45, 126, 338, 914 |
| BfoI | RGCGCY | 3 cut(s) | 550, 708, 749 |
| BfuI | GTATCC | 1 cut(s) | 568 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 3 cut(s) | 548, 647, 706 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BpiI | GAAGAC | 1 cut(s) | 273 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 387 |
| BsaHI | GRCGYC | 2 cut(s) | 547, 705 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 1 cut(s) | 492 |
| BsaWI | WCCGGW | 1 cut(s) | 511 |
| Bse1I | ACTGG | 1 cut(s) | 244 |
| BseAI | TCCGGA | 1 cut(s) | 511 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseCI | ATCGAT | 1 cut(s) | 387 |
| BseDI | CCNNGG | 1 cut(s) | 492 |
| BseGI | GGATG | 3 cut(s) | 210, 238, 724 |
| BseNI | ACTGG | 1 cut(s) | 244 |
| BseSI | GKGCMC | 1 cut(s) | 814 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| Bsh1236I | CGCG | 1 cut(s) | 318 |
| BshFI | GGCC | 2 cut(s) | 95, 693 |
| BshNI | GGYRCC | 2 cut(s) | 546, 704 |
| BshVI | ATCGAT | 1 cut(s) | 387 |
| BsiHKAI | GWGCWC | 2 cut(s) | 426, 829 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 512 |
| BsmAI | GTCTC | 1 cut(s) | 292 |
| BsnI | GGCC | 2 cut(s) | 95, 693 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 3 cut(s) | 426, 814, 829 |
| Bsp13I | TCCGGA | 1 cut(s) | 511 |
| Bsp143I | GATC | 6 cut(s) | 405, 488, 720, 802, 898, 910 |
| BspACI | CCGC | 4 cut(s) | 79, 316, 361, 846 |
| BspANI | GGCC | 2 cut(s) | 95, 693 |
| BspDI | ATCGAT | 1 cut(s) | 387 |
| BspEI | TCCGGA | 1 cut(s) | 511 |
| BspFNI | CGCG | 1 cut(s) | 318 |
| BspHI | TCATGA | 1 cut(s) | 418 |
| BspLI | GGNNCC | 3 cut(s) | 548, 647, 706 |
| BspPI | GGATC | 3 cut(s) | 413, 483, 715 |
| BspT107I | GGYRCC | 2 cut(s) | 546, 704 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 1 cut(s) | 244 |
| BssECI | CCNNGG | 1 cut(s) | 492 |
| BssMI | GATC | 6 cut(s) | 405, 488, 720, 802, 898, 910 |
| BssNI | GRCGYC | 2 cut(s) | 547, 705 |
| BssSI | CACGAG | 1 cut(s) | 828 |
| Bst2BI | CACGAG | 1 cut(s) | 828 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstACI | GRCGYC | 2 cut(s) | 547, 705 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 4 cut(s) | 184, 537, 569, 717 |
| BstDSI | CCRYGG | 1 cut(s) | 492 |
| BstF5I | GGATG | 3 cut(s) | 210, 238, 724 |
| BstFNI | CGCG | 1 cut(s) | 318 |
| BstH2I | RGCGCY | 3 cut(s) | 550, 708, 749 |
| BstHHI | GCGC | 3 cut(s) | 549, 707, 748 |
| BstKTI | GATC | 6 cut(s) | 408, 491, 723, 805, 901, 913 |
| BstMAI | GTCTC | 1 cut(s) | 292 |
| BstMBI | GATC | 6 cut(s) | 405, 488, 720, 802, 898, 910 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 167, 176, 188, 197, 315, 553, 743, 854, 875 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSLI | GKGCMC | 1 cut(s) | 814 |
| BstUI | CGCG | 1 cut(s) | 318 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 1 cut(s) | 273 |
| BstX2I | RGATCY | 2 cut(s) | 488, 720 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 701 |
| BstYI | RGATCY | 2 cut(s) | 488, 720 |
| Bsu15I | ATCGAT | 1 cut(s) | 387 |
| BsuI | GTATCC | 1 cut(s) | 568 |
| BsuRI | GGCC | 2 cut(s) | 95, 693 |
| BsuTUI | ATCGAT | 1 cut(s) | 387 |
| BtgI | CCRYGG | 1 cut(s) | 492 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 3 cut(s) | 210, 238, 724 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 1 cut(s) | 418 |
| CfoI | GCGC | 3 cut(s) | 549, 707, 748 |
| ClaI | ATCGAT | 1 cut(s) | 387 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 3 cut(s) | 419, 455, 695 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 4 cut(s) | 184, 537, 569, 717 |
| DinI | GGCGCC | 2 cut(s) | 548, 706 |
| DpnI | GATC | 6 cut(s) | 407, 490, 722, 804, 900, 912 |
| DpnII | GATC | 6 cut(s) | 405, 488, 720, 802, 898, 910 |
| DraIII | CACNNNGTG | 1 cut(s) | 886 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 591 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 591 |
| EaeI | YGGCCR | 1 cut(s) | 691 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 2 cut(s) | 424, 827 |
| Eco24I | GRGCYC | 2 cut(s) | 426, 829 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco53kI | GAGCTC | 2 cut(s) | 424, 827 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 2 cut(s) | 424, 827 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT38I | GRGCYC | 2 cut(s) | 426, 829 |
| EgeI | GGCGCC | 2 cut(s) | 548, 706 |
| EheI | GGCGCC | 2 cut(s) | 548, 706 |
| FaeI | CATG | 3 cut(s) | 422, 458, 698 |
| FatI | CATG | 3 cut(s) | 418, 454, 694 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FbaI | TGATCA | 1 cut(s) | 802 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 3 cut(s) | 197, 245, 711 |
| FriOI | GRGCYC | 2 cut(s) | 426, 829 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 4 cut(s) | 45, 126, 338, 914 |
| GlaI | GCGC | 3 cut(s) | 548, 706, 747 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 3 cut(s) | 550, 708, 749 |
| HaeIII | GGCC | 2 cut(s) | 95, 693 |
| HapII | CCGG | 1 cut(s) | 512 |
| HhaI | GCGC | 3 cut(s) | 549, 707, 748 |
| Hin1I | GRCGYC | 2 cut(s) | 547, 705 |
| Hin1II | CATG | 3 cut(s) | 422, 458, 698 |
| Hin6I | GCGC | 3 cut(s) | 547, 705, 746 |
| HinP1I | GCGC | 3 cut(s) | 547, 705, 746 |
| HincII | GTYRAC | 1 cut(s) | 659 |
| HindII | GTYRAC | 1 cut(s) | 659 |
| HindIII | AAGCTT | 2 cut(s) | 159, 735 |
| HinfI | GANTC | 5 cut(s) | 115, 220, 236, 320, 515 |
| HpaII | CCGG | 1 cut(s) | 512 |
| HphI | GGTGA | 1 cut(s) | 835 |
| Hpy166II | GTNNAC | 1 cut(s) | 659 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 802 |
| Hpy8I | GTNNAC | 1 cut(s) | 659 |
| HpyAV | CCTTC | 2 cut(s) | 270, 611 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 312, 661 |
| HpyCH4V | TGCA | 1 cut(s) | 398 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 167, 176, 188, 197, 315, 553, 743, 854, 875 |
| HpyF3I | CTNAG | 4 cut(s) | 184, 537, 569, 717 |
| HpySE526I | ACGT | 3 cut(s) | 135, 312, 661 |
| Hsp92I | GRCGYC | 2 cut(s) | 547, 705 |
| Hsp92II | CATG | 3 cut(s) | 422, 458, 698 |
| HspAI | GCGC | 3 cut(s) | 547, 705, 746 |
| KasI | GGCGCC | 2 cut(s) | 546, 704 |
| Kpn2I | TCCGGA | 1 cut(s) | 511 |
| Ksp22I | TGATCA | 1 cut(s) | 802 |
| Kzo9I | GATC | 6 cut(s) | 405, 488, 720, 802, 898, 910 |
| LmnI | GCTCC | 2 cut(s) | 34, 246 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| MaeI | CTAG | 4 cut(s) | 45, 126, 338, 914 |
| MaeII | ACGT | 3 cut(s) | 135, 312, 661 |
| MaeIII | GTNAC | 3 cut(s) | 5, 378, 841 |
| MalI | GATC | 6 cut(s) | 407, 490, 722, 804, 900, 912 |
| MboI | GATC | 6 cut(s) | 405, 488, 720, 802, 898, 910 |
| MboII | GAAGA | 6 cut(s) | 275, 278, 484, 845, 908, 917 |
| MflI | RGATCY | 2 cut(s) | 488, 720 |
| MhlI | GDGCHC | 3 cut(s) | 426, 814, 829 |
| MlsI | TGGCCA | 1 cut(s) | 693 |
| MluCI | AATT | 4 cut(s) | 17, 481, 520, 837 |
| MluNI | TGGCCA | 1 cut(s) | 693 |
| Mly113I | GGCGCC | 2 cut(s) | 547, 705 |
| MlyI | GAGTC | 2 cut(s) | 214, 314 |
| MnlI | CCTC | 9 cut(s) | 181, 368, 536, 544, 647, 667, 671, 697, 759 |
| Mox20I | TGGCCA | 1 cut(s) | 693 |
| MroI | TCCGGA | 1 cut(s) | 511 |
| MscI | TGGCCA | 1 cut(s) | 693 |
| MseI | TTAA | 1 cut(s) | 393 |
| MslI | CAYNNNNRTG | 4 cut(s) | 215, 231, 699, 729 |
| Msp20I | TGGCCA | 1 cut(s) | 693 |
| MspI | CCGG | 1 cut(s) | 512 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MvnI | CGCG | 1 cut(s) | 318 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 167, 176, 188, 197, 315, 553, 743, 854, 875 |
| NarI | GGCGCC | 2 cut(s) | 547, 705 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 6 cut(s) | 405, 488, 720, 802, 898, 910 |
| NlaIII | CATG | 3 cut(s) | 422, 458, 698 |
| NlaIV | GGNNCC | 3 cut(s) | 548, 647, 706 |
| NmuCI | GTSAC | 2 cut(s) | 378, 841 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 418 |
| PfeI | GAWTC | 3 cut(s) | 115, 236, 515 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 2 cut(s) | 214, 314 |
| PluTI | GGCGCC | 2 cut(s) | 550, 708 |
| PpsI | GAGTC | 2 cut(s) | 214, 314 |
| Psp124BI | GAGCTC | 2 cut(s) | 426, 829 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 3 cut(s) | 548, 647, 706 |
| PsuI | RGATCY | 2 cut(s) | 488, 720 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 4 cut(s) | 215, 231, 699, 729 |
| SacI | GAGCTC | 2 cut(s) | 426, 829 |
| SaqAI | TTAA | 1 cut(s) | 393 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 6 cut(s) | 405, 488, 720, 802, 898, 910 |
| SchI | GAGTC | 2 cut(s) | 214, 314 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 3 cut(s) | 426, 814, 829 |
| SfoI | GGCGCC | 2 cut(s) | 548, 706 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 215, 231, 699, 729 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 4 cut(s) | 17, 481, 520, 837 |
| SsiI | CCGC | 4 cut(s) | 79, 316, 361, 846 |
| SspDI | GGCGCC | 2 cut(s) | 546, 704 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 4 cut(s) | 45, 126, 338, 914 |
| SstI | GAGCTC | 2 cut(s) | 426, 829 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 3 cut(s) | 138, 315, 664 |
| TaqI | TCGA | 4 cut(s) | 120, 387, 485, 787 |
| TasI | AATT | 4 cut(s) | 17, 481, 520, 837 |
| TfiI | GAWTC | 3 cut(s) | 115, 236, 515 |
| Tru1I | TTAA | 1 cut(s) | 393 |
| Tru9I | TTAA | 1 cut(s) | 393 |
| TseFI | GTSAC | 2 cut(s) | 378, 841 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 2 cut(s) | 378, 841 |
| TspDTI | ATGAA | 6 cut(s) | 272, 276, 407, 452, 485, 747 |
| TspGWI | ACGGA | 3 cut(s) | 418, 481, 658 |
| XbaI | TCTAGA | 1 cut(s) | 913 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XspI | CTAG | 4 cut(s) | 45, 126, 338, 914 |