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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 96 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AfaI | GTAC | 2 cut(s) | 38, 168 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 46, 463, 534 |
| AflIII | ACRYGT | 1 cut(s) | 21 |
| AgsI | TTSAA | 2 cut(s) | 160, 589 |
| AjiI | CACGTC | 1 cut(s) | 22 |
| AluBI | AGCT | 2 cut(s) | 64, 368 |
| AluI | AGCT | 2 cut(s) | 64, 368 |
| Alw26I | GTCTC | 1 cut(s) | 592 |
| AoxI | GGCC | 1 cut(s) | 556 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 132, 164 |
| AspLEI | GCGC | 2 cut(s) | 454, 470 |
| AspS9I | GGNCC | 1 cut(s) | 514 |
| AsuII | TTCGAA | 1 cut(s) | 182 |
| AvaII | GGWCC | 1 cut(s) | 514 |
| AxyI | CCTNAGG | 2 cut(s) | 458, 485 |
| BbsI | GAAGAC | 2 cut(s) | 57, 260 |
| BccI | CCATC | 1 cut(s) | 281 |
| BcoDI | GTCTC | 1 cut(s) | 592 |
| BfaI | CTAG | 2 cut(s) | 57, 408 |
| Bme18I | GGWCC | 1 cut(s) | 514 |
| BmgBI | CACGTC | 1 cut(s) | 22 |
| BmgT120I | GGNCC | 1 cut(s) | 514 |
| BmiI | GGNNCC | 1 cut(s) | 355 |
| BpiI | GAAGAC | 2 cut(s) | 57, 260 |
| Bpu14I | TTCGAA | 1 cut(s) | 182 |
| BpuEI | CTTGAG | 1 cut(s) | 98 |
| BsaBI | GATNNNNATC | 1 cut(s) | 245 |
| BsaJI | CCNNGG | 1 cut(s) | 414 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 46, 463, 534 |
| Bse21I | CCTNAGG | 2 cut(s) | 458, 485 |
| Bse8I | GATNNNNATC | 1 cut(s) | 245 |
| BseDI | CCNNGG | 1 cut(s) | 414 |
| BseGI | GGATG | 1 cut(s) | 511 |
| BseJI | GATNNNNATC | 1 cut(s) | 245 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 46, 463, 534 |
| BshFI | GGCC | 1 cut(s) | 558 |
| BsiSI | CCGG | 1 cut(s) | 321 |
| BslFI | GGGAC | 1 cut(s) | 508 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 46, 463, 534 |
| BsmAI | GTCTC | 1 cut(s) | 592 |
| BsmFI | GGGAC | 1 cut(s) | 508 |
| BsnI | GGCC | 1 cut(s) | 558 |
| Bsp119I | TTCGAA | 1 cut(s) | 182 |
| Bsp143I | GATC | 1 cut(s) | 246 |
| BspANI | GGCC | 1 cut(s) | 558 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 1 cut(s) | 355 |
| BspT104I | TTCGAA | 1 cut(s) | 182 |
| BssECI | CCNNGG | 1 cut(s) | 414 |
| BssMI | GATC | 1 cut(s) | 246 |
| BssT1I | CCWWGG | 1 cut(s) | 414 |
| Bst6I | CTCTTC | 1 cut(s) | 584 |
| BstBI | TTCGAA | 1 cut(s) | 182 |
| BstDEI | CTNAG | 2 cut(s) | 458, 485 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 44, 461 |
| BstF5I | GGATG | 1 cut(s) | 511 |
| BstHHI | GCGC | 2 cut(s) | 454, 470 |
| BstKTI | GATC | 1 cut(s) | 249 |
| BstMAI | GTCTC | 1 cut(s) | 592 |
| BstMBI | GATC | 1 cut(s) | 246 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 260 |
| Bsu36I | CCTNAGG | 2 cut(s) | 458, 485 |
| BsuRI | GGCC | 1 cut(s) | 558 |
| BtrI | CACGTC | 1 cut(s) | 22 |
| BtsCI | GGATG | 1 cut(s) | 511 |
| BtsI | GCAGTG | 2 cut(s) | 89, 577 |
| BtsIMutI | CAGTG | 3 cut(s) | 89, 231, 577 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 2 cut(s) | 454, 470 |
| Cfr13I | GGNCC | 1 cut(s) | 514 |
| CseI | GACGC | 1 cut(s) | 333 |
| Csp6I | GTAC | 2 cut(s) | 37, 167 |
| CviAII | CATG | 4 cut(s) | 13, 132, 341, 358 |
| CviJI | RGCY | 5 cut(s) | 64, 356, 368, 426, 558 |
| CviKI_1 | RGCY | 5 cut(s) | 64, 356, 368, 426, 558 |
| CviQI | GTAC | 2 cut(s) | 37, 167 |
| DdeI | CTNAG | 2 cut(s) | 458, 485 |
| DpnI | GATC | 1 cut(s) | 248 |
| DpnII | GATC | 1 cut(s) | 246 |
| Eam1104I | CTCTTC | 1 cut(s) | 584 |
| EarI | CTCTTC | 1 cut(s) | 584 |
| Eco130I | CCWWGG | 1 cut(s) | 414 |
| Eco147I | AGGCCT | 1 cut(s) | 558 |
| Eco47I | GGWCC | 1 cut(s) | 514 |
| Eco81I | CCTNAGG | 2 cut(s) | 458, 485 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 44, 461 |
| EcoT14I | CCWWGG | 1 cut(s) | 414 |
| ErhI | CCWWGG | 1 cut(s) | 414 |
| FaeI | CATG | 4 cut(s) | 16, 135, 344, 361 |
| FaqI | GGGAC | 1 cut(s) | 508 |
| FatI | CATG | 4 cut(s) | 12, 131, 340, 357 |
| FokI | GGATG | 1 cut(s) | 518 |
| FspBI | CTAG | 2 cut(s) | 57, 408 |
| GlaI | GCGC | 2 cut(s) | 453, 469 |
| HaeIII | GGCC | 1 cut(s) | 558 |
| HapII | CCGG | 1 cut(s) | 321 |
| HgaI | GACGC | 1 cut(s) | 333 |
| HhaI | GCGC | 2 cut(s) | 454, 470 |
| Hin1II | CATG | 4 cut(s) | 16, 135, 344, 361 |
| Hin6I | GCGC | 2 cut(s) | 452, 468 |
| HinP1I | GCGC | 2 cut(s) | 452, 468 |
| HincII | GTYRAC | 1 cut(s) | 581 |
| HindII | GTYRAC | 1 cut(s) | 581 |
| HinfI | GANTC | 3 cut(s) | 104, 256, 436 |
| HpaII | CCGG | 1 cut(s) | 321 |
| Hpy166II | GTNNAC | 1 cut(s) | 581 |
| Hpy188I | TCNGA | 1 cut(s) | 306 |
| Hpy188III | TCNNGA | 7 cut(s) | 101, 116, 250, 341, 408, 433, 503 |
| Hpy8I | GTNNAC | 1 cut(s) | 581 |
| HpyAV | CCTTC | 1 cut(s) | 532 |
| HpyCH4IV | ACGT | 3 cut(s) | 21, 96, 363 |
| HpyCH4V | TGCA | 1 cut(s) | 563 |
| HpyF3I | CTNAG | 2 cut(s) | 458, 485 |
| HpySE526I | ACGT | 3 cut(s) | 21, 96, 363 |
| Hsp92II | CATG | 4 cut(s) | 16, 135, 344, 361 |
| HspAI | GCGC | 2 cut(s) | 452, 468 |
| Kzo9I | GATC | 1 cut(s) | 246 |
| LmnI | GCTCC | 2 cut(s) | 353, 567 |
| LpnPI | CCDG | 5 cut(s) | 122, 129, 334, 446, 488 |
| MaeI | CTAG | 2 cut(s) | 57, 408 |
| MaeII | ACGT | 3 cut(s) | 21, 96, 363 |
| MaeIII | GTNAC | 2 cut(s) | 101, 127 |
| MalI | GATC | 1 cut(s) | 248 |
| MboI | GATC | 1 cut(s) | 246 |
| MboII | GAAGA | 4 cut(s) | 62, 265, 406, 601 |
| MluCI | AATT | 5 cut(s) | 178, 212, 428, 447, 498 |
| MlyI | GAGTC | 3 cut(s) | 98, 250, 445 |
| MnlI | CCTC | 6 cut(s) | 40, 50, 457, 528, 569, 597 |
| MslI | CAYNNNNRTG | 2 cut(s) | 15, 389 |
| MspI | CCGG | 1 cut(s) | 321 |
| NdeII | GATC | 1 cut(s) | 246 |
| NlaIII | CATG | 4 cut(s) | 16, 135, 344, 361 |
| NlaIV | GGNNCC | 1 cut(s) | 355 |
| NmuCI | GTSAC | 2 cut(s) | 101, 127 |
| NspV | TTCGAA | 1 cut(s) | 182 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PceI | AGGCCT | 1 cut(s) | 558 |
| PleI | GAGTC | 3 cut(s) | 98, 250, 444 |
| PpsI | GAGTC | 3 cut(s) | 98, 250, 444 |
| Psp1406I | AACGTT | 1 cut(s) | 96 |
| PspN4I | GGNNCC | 1 cut(s) | 355 |
| PspPI | GGNCC | 1 cut(s) | 514 |
| RsaI | GTAC | 2 cut(s) | 38, 168 |
| RsaNI | GTAC | 2 cut(s) | 37, 167 |
| RseI | CAYNNNNRTG | 2 cut(s) | 15, 389 |
| Sau3AI | GATC | 1 cut(s) | 246 |
| Sau96I | GGNCC | 1 cut(s) | 514 |
| SchI | GAGTC | 3 cut(s) | 98, 250, 445 |
| SetI | ASST | 8 cut(s) | 24, 42, 66, 99, 366, 370, 580, 608 |
| SfuI | TTCGAA | 1 cut(s) | 182 |
| SinI | GGWCC | 1 cut(s) | 514 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 15, 389 |
| SmlI | CTYRAG | 1 cut(s) | 77 |
| SmoI | CTYRAG | 1 cut(s) | 77 |
| Sse9I | AATT | 5 cut(s) | 178, 212, 428, 447, 498 |
| SseBI | AGGCCT | 1 cut(s) | 558 |
| SspMI | CTAG | 2 cut(s) | 57, 408 |
| StuI | AGGCCT | 1 cut(s) | 558 |
| StyI | CCWWGG | 1 cut(s) | 414 |
| TaiI | ACGT | 3 cut(s) | 24, 99, 366 |
| TaqI | TCGA | 2 cut(s) | 182, 249 |
| TasI | AATT | 5 cut(s) | 178, 212, 428, 447, 498 |
| TatI | WGTACW | 1 cut(s) | 166 |
| TscAI | CASTG | 3 cut(s) | 89, 238, 577 |
| TseFI | GTSAC | 2 cut(s) | 101, 127 |
| Tsp45I | GTSAC | 2 cut(s) | 101, 127 |
| TspDTI | ATGAA | 4 cut(s) | 29, 224, 329, 374 |
| TspGWI | ACGGA | 1 cut(s) | 580 |
| TspRI | CASTG | 3 cut(s) | 89, 238, 577 |
| VpaK11BI | GGWCC | 1 cut(s) | 514 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 44, 461 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XbaI | TCTAGA | 1 cut(s) | 407 |
| XspI | CTAG | 2 cut(s) | 57, 408 |