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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 683, 764 |
| AccII | CGCG | 1 cut(s) | 669 |
| AccIII | TCCGGA | 1 cut(s) | 649 |
| AciI | CCGC | 4 cut(s) | 79, 361, 435, 687 |
| AclWI | GGATC | 1 cut(s) | 621 |
| AcoI | YGGCCR | 1 cut(s) | 313 |
| AcsI | RAATTY | 2 cut(s) | 428, 832 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 157, 709, 713 |
| AgsI | TTSAA | 3 cut(s) | 376, 624, 800 |
| AjnI | CCWGG | 3 cut(s) | 129, 706, 769 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 3 cut(s) | 155, 562, 572 |
| AluI | AGCT | 3 cut(s) | 155, 562, 572 |
| Alw21I | GWGCWC | 1 cut(s) | 564 |
| Alw26I | GTCTC | 2 cut(s) | 292, 496 |
| AlwI | GGATC | 1 cut(s) | 621 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 494 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| Aor13HI | TCCGGA | 1 cut(s) | 649 |
| AoxI | GGCC | 3 cut(s) | 93, 313, 821 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 2 cut(s) | 428, 832 |
| AspLEI | GCGC | 1 cut(s) | 671 |
| AsuHPI | GGTGA | 3 cut(s) | 770, 778, 785 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BaeGI | GKGCMC | 1 cut(s) | 769 |
| BanI | GGYRCC | 2 cut(s) | 683, 764 |
| BanII | GRGCYC | 1 cut(s) | 564 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| Bbv12I | GWGCWC | 1 cut(s) | 564 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 5 cut(s) | 92, 215, 342, 496, 755 |
| BceAI | ACGGC | 2 cut(s) | 300, 328 |
| BciT130I | CCWGG | 3 cut(s) | 131, 708, 771 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BcoDI | GTCTC | 2 cut(s) | 292, 496 |
| BfaI | CTAG | 3 cut(s) | 126, 338, 864 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 3 cut(s) | 131, 708, 771 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmiI | GGNNCC | 2 cut(s) | 685, 766 |
| BmrFI | CCNGG | 3 cut(s) | 131, 708, 771 |
| BmrI | ACTGGG | 1 cut(s) | 482 |
| BmsI | GCATC | 2 cut(s) | 94, 766 |
| BmuI | ACTGGG | 1 cut(s) | 482 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu10I | CCTNAGC | 2 cut(s) | 156, 818 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 3 cut(s) | 630, 707, 769 |
| BsaWI | WCCGGW | 1 cut(s) | 649 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 157, 709, 713 |
| Bse1I | ACTGG | 3 cut(s) | 49, 244, 488 |
| BseAI | TCCGGA | 1 cut(s) | 649 |
| BseBI | CCWGG | 3 cut(s) | 131, 708, 771 |
| BseDI | CCNNGG | 3 cut(s) | 630, 707, 769 |
| BseGI | GGATG | 3 cut(s) | 139, 210, 238 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 157, 709, 713 |
| BseMII | CTCAG | 2 cut(s) | 170, 832 |
| BseNI | ACTGG | 3 cut(s) | 49, 244, 488 |
| BseSI | GKGCMC | 1 cut(s) | 769 |
| BseX3I | CGGCCG | 1 cut(s) | 313 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| Bsh1236I | CGCG | 1 cut(s) | 669 |
| Bsh1285I | CGRYCG | 1 cut(s) | 316 |
| BshFI | GGCC | 3 cut(s) | 95, 315, 823 |
| BshNI | GGYRCC | 2 cut(s) | 683, 764 |
| BsiEI | CGRYCG | 1 cut(s) | 316 |
| BsiHKAI | GWGCWC | 1 cut(s) | 564 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 650 |
| BslFI | GGGAC | 2 cut(s) | 649, 707 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 157, 709, 713 |
| BsmAI | GTCTC | 2 cut(s) | 292, 496 |
| BsmFI | GGGAC | 2 cut(s) | 649, 707 |
| BsmI | GAATGC | 1 cut(s) | 282 |
| BsnI | GGCC | 3 cut(s) | 95, 315, 823 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 2 cut(s) | 564, 769 |
| Bsp13I | TCCGGA | 1 cut(s) | 649 |
| Bsp143I | GATC | 2 cut(s) | 444, 626 |
| BspACI | CCGC | 4 cut(s) | 79, 361, 435, 687 |
| BspANI | GGCC | 3 cut(s) | 95, 315, 823 |
| BspCNI | CTCAG | 2 cut(s) | 169, 831 |
| BspEI | TCCGGA | 1 cut(s) | 649 |
| BspFNI | CGCG | 1 cut(s) | 669 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 2 cut(s) | 685, 766 |
| BspPI | GGATC | 1 cut(s) | 621 |
| BspT107I | GGYRCC | 2 cut(s) | 683, 764 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 3 cut(s) | 49, 244, 488 |
| BssECI | CCNNGG | 3 cut(s) | 630, 707, 769 |
| BssMI | GATC | 2 cut(s) | 444, 626 |
| Bst2UI | CCWGG | 3 cut(s) | 131, 708, 771 |
| Bst4CI | ACNGT | 2 cut(s) | 145, 721 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 715 |
| BstDEI | CTNAG | 6 cut(s) | 156, 184, 421, 510, 818, 885 |
| BstDSI | CCRYGG | 1 cut(s) | 630 |
| BstF5I | GGATG | 3 cut(s) | 139, 210, 238 |
| BstFNI | CGCG | 1 cut(s) | 669 |
| BstHHI | GCGC | 1 cut(s) | 671 |
| BstKTI | GATC | 2 cut(s) | 447, 629 |
| BstMAI | GTCTC | 2 cut(s) | 292, 496 |
| BstMBI | GATC | 2 cut(s) | 444, 626 |
| BstMCI | CGRYCG | 1 cut(s) | 316 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| BstNI | CCWGG | 3 cut(s) | 131, 708, 771 |
| BstSCI | CCNGG | 3 cut(s) | 129, 706, 769 |
| BstSLI | GKGCMC | 1 cut(s) | 769 |
| BstUI | CGCG | 1 cut(s) | 669 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| BstX2I | RGATCY | 1 cut(s) | 626 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 707 |
| BstYI | RGATCY | 1 cut(s) | 626 |
| BstZI | CGGCCG | 1 cut(s) | 313 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 3 cut(s) | 95, 315, 823 |
| BtgI | CCRYGG | 1 cut(s) | 630 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtsCI | GGATG | 3 cut(s) | 139, 210, 238 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 715 |
| CaiI | CAGNNNCTG | 1 cut(s) | 494 |
| CciI | TCATGA | 1 cut(s) | 556 |
| CfoI | GCGC | 1 cut(s) | 671 |
| CseI | GACGC | 2 cut(s) | 736, 823 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 612, 647 |
| CviAII | CATG | 3 cut(s) | 557, 593, 731 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 6 cut(s) | 156, 184, 421, 510, 818, 885 |
| DpnI | GATC | 2 cut(s) | 446, 628 |
| DpnII | GATC | 2 cut(s) | 444, 626 |
| EaeI | YGGCCR | 1 cut(s) | 313 |
| EagI | CGGCCG | 1 cut(s) | 313 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 562 |
| EclXI | CGGCCG | 1 cut(s) | 313 |
| Eco147I | AGGCCT | 1 cut(s) | 823 |
| Eco24I | GRGCYC | 1 cut(s) | 564 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco52I | CGGCCG | 1 cut(s) | 313 |
| Eco53kI | GAGCTC | 1 cut(s) | 562 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 1 cut(s) | 562 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 3 cut(s) | 129, 706, 769 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT38I | GRGCYC | 1 cut(s) | 564 |
| FaeI | CATG | 3 cut(s) | 560, 596, 734 |
| FaqI | GGGAC | 2 cut(s) | 649, 707 |
| FatI | CATG | 3 cut(s) | 556, 592, 730 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 3 cut(s) | 146, 197, 245 |
| FriOI | GRGCYC | 1 cut(s) | 564 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 3 cut(s) | 126, 338, 864 |
| GlaI | GCGC | 1 cut(s) | 670 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 3 cut(s) | 95, 315, 823 |
| HapII | CCGG | 1 cut(s) | 650 |
| HgaI | GACGC | 2 cut(s) | 736, 823 |
| HhaI | GCGC | 1 cut(s) | 671 |
| Hin1II | CATG | 3 cut(s) | 560, 596, 734 |
| Hin6I | GCGC | 1 cut(s) | 669 |
| HinP1I | GCGC | 1 cut(s) | 669 |
| HincII | GTYRAC | 1 cut(s) | 148 |
| HindII | GTYRAC | 1 cut(s) | 148 |
| HinfI | GANTC | 7 cut(s) | 102, 115, 220, 236, 472, 543, 653 |
| HpaII | CCGG | 1 cut(s) | 650 |
| HphI | GGTGA | 3 cut(s) | 770, 778, 785 |
| Hpy166II | GTNNAC | 2 cut(s) | 148, 697 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 813 |
| Hpy188III | TCNNGA | 7 cut(s) | 71, 119, 332, 386, 557, 624, 650 |
| Hpy8I | GTNNAC | 2 cut(s) | 148, 697 |
| HpyCH4III | ACNGT | 2 cut(s) | 145, 721 |
| HpyCH4V | TGCA | 2 cut(s) | 497, 536 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| HpyF3I | CTNAG | 6 cut(s) | 156, 184, 421, 510, 818, 885 |
| Hsp92II | CATG | 3 cut(s) | 560, 596, 734 |
| HspAI | GCGC | 1 cut(s) | 669 |
| Kpn2I | TCCGGA | 1 cut(s) | 649 |
| Kzo9I | GATC | 2 cut(s) | 444, 626 |
| LmnI | GCTCC | 3 cut(s) | 34, 246, 569 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 2 cut(s) | 94, 766 |
| MaeI | CTAG | 3 cut(s) | 126, 338, 864 |
| MaeIII | GTNAC | 3 cut(s) | 5, 529, 843 |
| MalI | GATC | 2 cut(s) | 446, 628 |
| MboI | GATC | 2 cut(s) | 444, 626 |
| MboII | GAAGA | 4 cut(s) | 275, 278, 308, 481 |
| MflI | RGATCY | 1 cut(s) | 626 |
| MhlI | GDGCHC | 2 cut(s) | 564, 769 |
| MluCI | AATT | 6 cut(s) | 17, 428, 522, 619, 658, 832 |
| MlyI | GAGTC | 2 cut(s) | 214, 466 |
| MnlI | CCTC | 6 cut(s) | 181, 331, 368, 674, 700, 867 |
| MroI | TCCGGA | 1 cut(s) | 649 |
| MseI | TTAA | 1 cut(s) | 414 |
| MslI | CAYNNNNRTG | 4 cut(s) | 215, 231, 605, 756 |
| MspI | CCGG | 1 cut(s) | 650 |
| MspR9I | CCNGG | 3 cut(s) | 131, 708, 771 |
| Mva1269I | GAATGC | 1 cut(s) | 282 |
| MvaI | CCWGG | 3 cut(s) | 131, 708, 771 |
| MvnI | CGCG | 1 cut(s) | 669 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 2 cut(s) | 444, 626 |
| NlaIII | CATG | 3 cut(s) | 560, 596, 734 |
| NlaIV | GGNNCC | 2 cut(s) | 685, 766 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PceI | AGGCCT | 1 cut(s) | 823 |
| PctI | GAATGC | 1 cut(s) | 282 |
| PfeI | GAWTC | 5 cut(s) | 102, 115, 236, 543, 653 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 2 cut(s) | 214, 466 |
| PpsI | GAGTC | 2 cut(s) | 214, 466 |
| Psp124BI | GAGCTC | 1 cut(s) | 564 |
| Psp6I | CCWGG | 3 cut(s) | 129, 706, 769 |
| PspGI | CCWGG | 3 cut(s) | 129, 706, 769 |
| PspN4I | GGNNCC | 2 cut(s) | 685, 766 |
| PstNI | CAGNNNCTG | 1 cut(s) | 494 |
| PsuI | RGATCY | 1 cut(s) | 626 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 4 cut(s) | 215, 231, 605, 756 |
| SacI | GAGCTC | 1 cut(s) | 564 |
| SaqAI | TTAA | 1 cut(s) | 414 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 2 cut(s) | 444, 626 |
| SchI | GAGTC | 2 cut(s) | 214, 466 |
| ScrFI | CCNGG | 3 cut(s) | 131, 708, 771 |
| SduI | GDGCHC | 2 cut(s) | 564, 769 |
| SetI | ASST | 9 cut(s) | 12, 65, 157, 339, 554, 564, 574, 709, 775 |
| SfaNI | GCATC | 2 cut(s) | 94, 766 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 215, 231, 605, 756 |
| SmlI | CTYRAG | 2 cut(s) | 89, 119 |
| SmoI | CTYRAG | 2 cut(s) | 89, 119 |
| Sse9I | AATT | 6 cut(s) | 17, 428, 522, 619, 658, 832 |
| SseBI | AGGCCT | 1 cut(s) | 823 |
| SsiI | CCGC | 4 cut(s) | 79, 361, 435, 687 |
| SspMI | CTAG | 3 cut(s) | 126, 338, 864 |
| SstI | GAGCTC | 1 cut(s) | 564 |
| StuI | AGGCCT | 1 cut(s) | 823 |
| StyD4I | CCNGG | 3 cut(s) | 129, 706, 769 |
| TaaI | ACNGT | 2 cut(s) | 145, 721 |
| TaqI | TCGA | 4 cut(s) | 120, 294, 398, 520 |
| TasI | AATT | 6 cut(s) | 17, 428, 522, 619, 658, 832 |
| TfiI | GAWTC | 5 cut(s) | 102, 115, 236, 543, 653 |
| Tru1I | TTAA | 1 cut(s) | 414 |
| Tru9I | TTAA | 1 cut(s) | 414 |
| TseI | GCWGC | 1 cut(s) | 179 |
| TspDTI | ATGAA | 4 cut(s) | 272, 276, 545, 590 |
| TspGWI | ACGGA | 2 cut(s) | 619, 682 |
| XapI | RAATTY | 2 cut(s) | 428, 832 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 704, 710, 758 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XspI | CTAG | 3 cut(s) | 126, 338, 864 |