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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 747, 792, 921 |
| Acc36I | ACCTGC | 2 cut(s) | 333, 495 |
| Acc65I | GGTACC | 2 cut(s) | 822, 951 |
| AccB1I | GGYRCC | 3 cut(s) | 822, 951, 1118 |
| AccBSI | CCGCTC | 2 cut(s) | 820, 949 |
| AciI | CCGC | 5 cut(s) | 820, 868, 889, 949, 1142 |
| AclWI | GGATC | 1 cut(s) | 141 |
| AcuI | CTGAAG | 3 cut(s) | 675, 1221, 1275 |
| AcvI | CACGTG | 2 cut(s) | 1040, 1058 |
| AcyI | GRCGYC | 1 cut(s) | 190 |
| AdeI | CACNNNGTG | 1 cut(s) | 1043 |
| AfaI | GTAC | 5 cut(s) | 147, 652, 824, 953, 1193 |
| AfeI | AGCGCT | 2 cut(s) | 258, 269 |
| AflIII | ACRYGT | 2 cut(s) | 1037, 1055 |
| AgsI | TTSAA | 7 cut(s) | 96, 307, 314, 476, 753, 1151, 1249 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 410, 572 |
| AjnI | CCWGG | 3 cut(s) | 117, 876, 1005 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 255, 287 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 5 cut(s) | 247, 371, 533, 713, 1253 |
| AluI | AGCT | 5 cut(s) | 247, 371, 533, 713, 1253 |
| AlwI | GGATC | 1 cut(s) | 141 |
| Aor51HI | AGCGCT | 2 cut(s) | 258, 269 |
| AoxI | GGCC | 3 cut(s) | 755, 856, 985 |
| ApaI | GGGCCC | 2 cut(s) | 860, 989 |
| ApeKI | GCWGC | 1 cut(s) | 1277 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 372, 534 |
| Asp718I | GGTACC | 2 cut(s) | 822, 951 |
| AspA2I | CCTAGG | 2 cut(s) | 14, 1130 |
| AspLEI | GCGC | 5 cut(s) | 259, 270, 330, 492, 942 |
| AspS9I | GGNCC | 6 cut(s) | 756, 856, 857, 985, 986, 1171 |
| AsuC2I | CCSGG | 1 cut(s) | 131 |
| AsuHPI | GGTGA | 1 cut(s) | 1225 |
| AvaII | GGWCC | 1 cut(s) | 1171 |
| AvrII | CCTAGG | 2 cut(s) | 14, 1130 |
| BaeGI | GKGCMC | 2 cut(s) | 860, 989 |
| BanI | GGYRCC | 3 cut(s) | 822, 951, 1118 |
| BanII | GRGCYC | 2 cut(s) | 860, 989 |
| BauI | CACGAG | 1 cut(s) | 734 |
| BbrPI | CACGTG | 2 cut(s) | 1040, 1058 |
| BbvI | GCAGC | 1 cut(s) | 1289 |
| BccI | CCATC | 1 cut(s) | 93 |
| BceAI | ACGGC | 1 cut(s) | 1071 |
| BciT130I | CCWGG | 3 cut(s) | 119, 878, 1007 |
| BciVI | GTATCC | 2 cut(s) | 1027, 1088 |
| BcnI | CCSGG | 1 cut(s) | 131 |
| BfaI | CTAG | 4 cut(s) | 15, 260, 1083, 1131 |
| BfmI | CTRYAG | 1 cut(s) | 708 |
| BfoI | RGCGCY | 2 cut(s) | 260, 271 |
| BfuAI | ACCTGC | 2 cut(s) | 333, 495 |
| BfuI | GTATCC | 2 cut(s) | 1027, 1088 |
| BisI | GCNGC | 1 cut(s) | 1278 |
| BlnI | CCTAGG | 2 cut(s) | 14, 1130 |
| BlsI | GCNGC | 1 cut(s) | 1279 |
| Bme1390I | CCNGG | 4 cut(s) | 119, 131, 878, 1007 |
| Bme18I | GGWCC | 1 cut(s) | 1171 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 410, 572 |
| BmgT120I | GGNCC | 6 cut(s) | 756, 856, 857, 985, 986, 1171 |
| BmiI | GGNNCC | 6 cut(s) | 824, 858, 953, 987, 1120, 1172 |
| BmrFI | CCNGG | 4 cut(s) | 119, 131, 878, 1007 |
| BmsI | GCATC | 3 cut(s) | 174, 226, 1264 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| BpuMI | CCSGG | 1 cut(s) | 131 |
| BsaAI | YACGTR | 2 cut(s) | 1040, 1058 |
| BsaHI | GRCGYC | 1 cut(s) | 190 |
| BsaJI | CCNNGG | 2 cut(s) | 14, 1130 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 209, 239, 1054, 1084, 1111, 1141 |
| Bse3DI | GCAATG | 1 cut(s) | 283 |
| BseBI | CCWGG | 3 cut(s) | 119, 878, 1007 |
| BseDI | CCNNGG | 2 cut(s) | 14, 1130 |
| BseGI | GGATG | 3 cut(s) | 79, 241, 1279 |
| BseMI | GCAATG | 1 cut(s) | 283 |
| BseMII | CTCAG | 3 cut(s) | 223, 705, 1166 |
| BseSI | GKGCMC | 2 cut(s) | 860, 989 |
| BseXI | GCAGC | 1 cut(s) | 1289 |
| BshFI | GGCC | 3 cut(s) | 757, 858, 987 |
| BshNI | GGYRCC | 3 cut(s) | 822, 951, 1118 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BsiWI | CGTACG | 1 cut(s) | 145 |
| BslFI | GGGAC | 5 cut(s) | 852, 861, 981, 990, 1184 |
| BsmFI | GGGAC | 5 cut(s) | 852, 861, 981, 990, 1184 |
| BsnI | GGCC | 3 cut(s) | 757, 858, 987 |
| Bsp120I | GGGCCC | 2 cut(s) | 856, 985 |
| Bsp1286I | GDGCHC | 2 cut(s) | 860, 989 |
| Bsp143I | GATC | 2 cut(s) | 133, 228 |
| BspACI | CCGC | 5 cut(s) | 820, 868, 889, 949, 1142 |
| BspANI | GGCC | 3 cut(s) | 757, 858, 987 |
| BspCNI | CTCAG | 3 cut(s) | 222, 706, 1167 |
| BspHI | TCATGA | 3 cut(s) | 675, 778, 907 |
| BspLI | GGNNCC | 6 cut(s) | 824, 858, 953, 987, 1120, 1172 |
| BspMI | ACCTGC | 2 cut(s) | 333, 495 |
| BspPI | GGATC | 1 cut(s) | 141 |
| BspQI | GCTCTTC | 3 cut(s) | 258, 378, 540 |
| BspT107I | GGYRCC | 3 cut(s) | 822, 951, 1118 |
| BsrBI | CCGCTC | 2 cut(s) | 820, 949 |
| BsrDI | GCAATG | 1 cut(s) | 283 |
| BssECI | CCNNGG | 2 cut(s) | 14, 1130 |
| BssMI | GATC | 2 cut(s) | 133, 228 |
| BssNI | GRCGYC | 1 cut(s) | 190 |
| BssSI | CACGAG | 1 cut(s) | 734 |
| BssT1I | CCWWGG | 2 cut(s) | 14, 1130 |
| Bst2BI | CACGAG | 1 cut(s) | 734 |
| Bst2UI | CCWGG | 3 cut(s) | 119, 878, 1007 |
| Bst4CI | ACNGT | 4 cut(s) | 62, 384, 546, 650 |
| Bst6I | CTCTTC | 3 cut(s) | 258, 378, 540 |
| BstACI | GRCGYC | 1 cut(s) | 190 |
| BstBAI | YACGTR | 2 cut(s) | 1040, 1058 |
| BstC8I | GCNNGC | 2 cut(s) | 165, 1142 |
| BstDEI | CTNAG | 6 cut(s) | 209, 714, 768, 828, 957, 1175 |
| BstF5I | GGATG | 3 cut(s) | 79, 241, 1279 |
| BstH2I | RGCGCY | 2 cut(s) | 260, 271 |
| BstHHI | GCGC | 5 cut(s) | 259, 270, 330, 492, 942 |
| BstKTI | GATC | 2 cut(s) | 136, 231 |
| BstMBI | GATC | 2 cut(s) | 133, 228 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 160, 265, 946 |
| BstNI | CCWGG | 3 cut(s) | 119, 878, 1007 |
| BstNSI | RCATGY | 1 cut(s) | 167 |
| BstSCI | CCNGG | 4 cut(s) | 117, 129, 876, 1005 |
| BstSFI | CTRYAG | 1 cut(s) | 708 |
| BstSLI | GKGCMC | 2 cut(s) | 860, 989 |
| BstV1I | GCAGC | 1 cut(s) | 1289 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1025 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| BsuI | GTATCC | 2 cut(s) | 1027, 1088 |
| BsuRI | GGCC | 3 cut(s) | 757, 858, 987 |
| BtsCI | GGATG | 3 cut(s) | 79, 241, 1279 |
| BveI | ACCTGC | 2 cut(s) | 333, 495 |
| Cac8I | GCNNGC | 2 cut(s) | 165, 1142 |
| CciI | TCATGA | 3 cut(s) | 675, 778, 907 |
| CfoI | GCGC | 5 cut(s) | 259, 270, 330, 492, 942 |
| Cfr13I | GGNCC | 6 cut(s) | 756, 856, 857, 985, 986, 1171 |
| CseI | GACGC | 1 cut(s) | 198 |
| Csp6I | GTAC | 5 cut(s) | 146, 651, 823, 952, 1192 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 880, 915 |
| CviQI | GTAC | 5 cut(s) | 146, 651, 823, 952, 1192 |
| DdeI | CTNAG | 6 cut(s) | 209, 714, 768, 828, 957, 1175 |
| DpnI | GATC | 2 cut(s) | 135, 230 |
| DpnII | GATC | 2 cut(s) | 133, 228 |
| DraIII | CACNNNGTG | 1 cut(s) | 1043 |
| DriI | GACNNNNNGTC | 2 cut(s) | 410, 572 |
| Eam1104I | CTCTTC | 3 cut(s) | 258, 378, 540 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 410, 572 |
| EarI | CTCTTC | 3 cut(s) | 258, 378, 540 |
| Eco130I | CCWWGG | 2 cut(s) | 14, 1130 |
| Eco24I | GRGCYC | 2 cut(s) | 860, 989 |
| Eco47I | GGWCC | 1 cut(s) | 1171 |
| Eco47III | AGCGCT | 2 cut(s) | 258, 269 |
| Eco57I | CTGAAG | 3 cut(s) | 675, 1221, 1275 |
| Eco72I | CACGTG | 2 cut(s) | 1040, 1058 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1171 |
| EcoRII | CCWGG | 3 cut(s) | 117, 876, 1005 |
| EcoT14I | CCWWGG | 2 cut(s) | 14, 1130 |
| EcoT38I | GRGCYC | 2 cut(s) | 860, 989 |
| ErhI | CCWWGG | 2 cut(s) | 14, 1130 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1179, 1211 |
| FaqI | GGGAC | 5 cut(s) | 852, 861, 981, 990, 1184 |
| FauI | CCCGC | 1 cut(s) | 1149 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| Fnu4HI | GCNGC | 1 cut(s) | 1278 |
| FokI | GGATG | 3 cut(s) | 86, 248, 1286 |
| FriOI | GRGCYC | 2 cut(s) | 860, 989 |
| Fsp4HI | GCNGC | 1 cut(s) | 1278 |
| FspBI | CTAG | 4 cut(s) | 15, 260, 1083, 1131 |
| GlaI | GCGC | 5 cut(s) | 258, 269, 329, 491, 941 |
| GluI | GCNGC | 1 cut(s) | 1278 |
| HaeII | RGCGCY | 2 cut(s) | 260, 271 |
| HaeIII | GGCC | 3 cut(s) | 757, 858, 987 |
| HapII | CCGG | 1 cut(s) | 131 |
| HgaI | GACGC | 1 cut(s) | 198 |
| HhaI | GCGC | 5 cut(s) | 259, 270, 330, 492, 942 |
| Hin1I | GRCGYC | 1 cut(s) | 190 |
| Hin6I | GCGC | 5 cut(s) | 257, 268, 328, 490, 940 |
| HinP1I | GCGC | 5 cut(s) | 257, 268, 328, 490, 940 |
| HincII | GTYRAC | 1 cut(s) | 1228 |
| HindII | GTYRAC | 1 cut(s) | 1228 |
| HinfI | GANTC | 5 cut(s) | 38, 287, 338, 500, 672 |
| HpaII | CCGG | 1 cut(s) | 131 |
| HphI | GGTGA | 1 cut(s) | 1225 |
| Hpy166II | GTNNAC | 4 cut(s) | 404, 566, 1192, 1228 |
| Hpy188I | TCNGA | 4 cut(s) | 52, 212, 367, 529 |
| Hpy188III | TCNNGA | 5 cut(s) | 181, 676, 736, 779, 908 |
| Hpy8I | GTNNAC | 4 cut(s) | 404, 566, 1192, 1228 |
| Hpy99I | CGWCG | 1 cut(s) | 192 |
| HpyAV | CCTTC | 6 cut(s) | 301, 301, 460, 622, 875, 1004 |
| HpyCH4III | ACNGT | 4 cut(s) | 62, 384, 546, 650 |
| HpyCH4IV | ACGT | 4 cut(s) | 850, 979, 1039, 1057 |
| HpyCH4V | TGCA | 5 cut(s) | 239, 797, 926, 1267, 1277 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 160, 265, 946 |
| HpyF3I | CTNAG | 6 cut(s) | 209, 714, 768, 828, 957, 1175 |
| HpySE526I | ACGT | 4 cut(s) | 850, 979, 1039, 1057 |
| Hsp92I | GRCGYC | 1 cut(s) | 190 |
| HspAI | GCGC | 5 cut(s) | 257, 268, 328, 490, 940 |
| KpnI | GGTACC | 2 cut(s) | 826, 955 |
| Kzo9I | GATC | 2 cut(s) | 133, 228 |
| LguI | GCTCTTC | 3 cut(s) | 258, 378, 540 |
| LmnI | GCTCC | 3 cut(s) | 810, 817, 946 |
| Lsp1109I | GCAGC | 1 cut(s) | 1289 |
| LweI | GCATC | 3 cut(s) | 174, 226, 1264 |
| MaeI | CTAG | 4 cut(s) | 15, 260, 1083, 1131 |
| MaeII | ACGT | 4 cut(s) | 850, 979, 1039, 1057 |
| MaeIII | GTNAC | 3 cut(s) | 67, 412, 574 |
| MalI | GATC | 2 cut(s) | 135, 230 |
| MbiI | CCGCTC | 2 cut(s) | 820, 949 |
| MboI | GATC | 2 cut(s) | 133, 228 |
| MboII | GAAGA | 7 cut(s) | 275, 365, 527, 1214, 1217, 1220, 1268 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MhlI | GDGCHC | 2 cut(s) | 860, 989 |
| MlyI | GAGTC | 1 cut(s) | 32 |
| MroXI | GAANNNNTTC | 2 cut(s) | 372, 534 |
| MseI | TTAA | 2 cut(s) | 126, 1047 |
| MslI | CAYNNNNRTG | 3 cut(s) | 734, 1113, 1272 |
| MspI | CCGG | 1 cut(s) | 131 |
| MspR9I | CCNGG | 4 cut(s) | 119, 131, 878, 1007 |
| MvaI | CCWGG | 3 cut(s) | 119, 878, 1007 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 160, 265, 946 |
| NciI | CCSGG | 1 cut(s) | 131 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 2 cut(s) | 133, 228 |
| NlaIV | GGNNCC | 6 cut(s) | 824, 858, 953, 987, 1120, 1172 |
| NmuCI | GTSAC | 2 cut(s) | 412, 574 |
| NspI | RCATGY | 1 cut(s) | 167 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PagI | TCATGA | 3 cut(s) | 675, 778, 907 |
| PciSI | GCTCTTC | 3 cut(s) | 258, 378, 540 |
| PdmI | GAANNNNTTC | 2 cut(s) | 372, 534 |
| PfeI | GAWTC | 4 cut(s) | 287, 338, 500, 672 |
| Pfl23II | CGTACG | 1 cut(s) | 145 |
| PkrI | GCNGC | 1 cut(s) | 1279 |
| PleI | GAGTC | 1 cut(s) | 32 |
| PmaCI | CACGTG | 2 cut(s) | 1040, 1058 |
| PmlI | CACGTG | 2 cut(s) | 1040, 1058 |
| PpsI | GAGTC | 1 cut(s) | 32 |
| Ppu21I | YACGTR | 2 cut(s) | 1040, 1058 |
| PpuMI | RGGWCCY | 1 cut(s) | 1171 |
| PsiI | TTATAA | 3 cut(s) | 747, 792, 921 |
| Psp5II | RGGWCCY | 1 cut(s) | 1171 |
| Psp6I | CCWGG | 3 cut(s) | 117, 876, 1005 |
| PspCI | CACGTG | 2 cut(s) | 1040, 1058 |
| PspGI | CCWGG | 3 cut(s) | 117, 876, 1005 |
| PspLI | CGTACG | 1 cut(s) | 145 |
| PspN4I | GGNNCC | 6 cut(s) | 824, 858, 953, 987, 1120, 1172 |
| PspOMI | GGGCCC | 2 cut(s) | 856, 985 |
| PspPI | GGNCC | 6 cut(s) | 756, 856, 857, 985, 986, 1171 |
| PspPPI | RGGWCCY | 1 cut(s) | 1171 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| RsaI | GTAC | 5 cut(s) | 147, 652, 824, 953, 1193 |
| RsaNI | GTAC | 5 cut(s) | 146, 651, 823, 952, 1192 |
| RseI | CAYNNNNRTG | 3 cut(s) | 734, 1113, 1272 |
| SapI | GCTCTTC | 3 cut(s) | 258, 378, 540 |
| SaqAI | TTAA | 2 cut(s) | 126, 1047 |
| SatI | GCNGC | 1 cut(s) | 1278 |
| Sau3AI | GATC | 2 cut(s) | 133, 228 |
| Sau96I | GGNCC | 6 cut(s) | 756, 856, 857, 985, 986, 1171 |
| SchI | GAGTC | 1 cut(s) | 32 |
| ScrFI | CCNGG | 4 cut(s) | 119, 131, 878, 1007 |
| SduI | GDGCHC | 2 cut(s) | 860, 989 |
| SfaNI | GCATC | 3 cut(s) | 174, 226, 1264 |
| SfcI | CTRYAG | 1 cut(s) | 708 |
| SinI | GGWCC | 1 cut(s) | 1171 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 734, 1113, 1272 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| SphI | GCATGC | 1 cut(s) | 167 |
| SsiI | CCGC | 5 cut(s) | 820, 868, 889, 949, 1142 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 4 cut(s) | 15, 260, 1083, 1131 |
| StyD4I | CCNGG | 4 cut(s) | 117, 129, 876, 1005 |
| StyI | CCWWGG | 2 cut(s) | 14, 1130 |
| TaaI | ACNGT | 4 cut(s) | 62, 384, 546, 650 |
| TaiI | ACGT | 4 cut(s) | 853, 982, 1042, 1060 |
| TaqI | TCGA | 3 cut(s) | 5, 21, 227 |
| TatI | WGTACW | 1 cut(s) | 650 |
| TfiI | GAWTC | 4 cut(s) | 287, 338, 500, 672 |
| Tru1I | TTAA | 2 cut(s) | 126, 1047 |
| Tru9I | TTAA | 2 cut(s) | 126, 1047 |
| TseFI | GTSAC | 2 cut(s) | 412, 574 |
| TseI | GCWGC | 1 cut(s) | 1277 |
| Tsp45I | GTSAC | 2 cut(s) | 412, 574 |
| TspDTI | ATGAA | 4 cut(s) | 24, 674, 767, 896 |
| TspGWI | ACGGA | 1 cut(s) | 86 |
| VpaK11BI | GGWCC | 1 cut(s) | 1171 |
| XceI | RCATGY | 1 cut(s) | 167 |
| XmaJI | CCTAGG | 2 cut(s) | 14, 1130 |
| XmnI | GAANNNNTTC | 2 cut(s) | 372, 534 |
| XspI | CTAG | 4 cut(s) | 15, 260, 1083, 1131 |