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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 409 |
| AciI | CCGC | 2 cut(s) | 488, 512 |
| AclWI | GGATC | 1 cut(s) | 450 |
| AcoI | YGGCCR | 1 cut(s) | 554 |
| AcyI | GRCGYC | 1 cut(s) | 410 |
| AflIII | ACRYGT | 1 cut(s) | 7 |
| AgsI | TTSAA | 2 cut(s) | 215, 605 |
| AjiI | CACGTC | 1 cut(s) | 8 |
| AleI | CACNNNNGTG | 1 cut(s) | 205 |
| AluBI | AGCT | 2 cut(s) | 27, 609 |
| AluI | AGCT | 2 cut(s) | 27, 609 |
| AlwI | GGATC | 1 cut(s) | 450 |
| AoxI | GGCC | 2 cut(s) | 554, 568 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 374, 406 |
| AseI | ATTAAT | 1 cut(s) | 618 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 244 |
| AspLEI | GCGC | 1 cut(s) | 412 |
| AsuHPI | GGTGA | 1 cut(s) | 576 |
| BalI | TGGCCA | 1 cut(s) | 556 |
| BanI | GGYRCC | 1 cut(s) | 409 |
| BbsI | GAAGAC | 2 cut(s) | 112, 315 |
| BccI | CCATC | 3 cut(s) | 335, 336, 595 |
| BciT130I | CCWGG | 1 cut(s) | 3 |
| BciVI | GTATCC | 1 cut(s) | 431 |
| BfaI | CTAG | 2 cut(s) | 112, 177 |
| BfmI | CTRYAG | 1 cut(s) | 373 |
| BfoI | RGCGCY | 1 cut(s) | 413 |
| BfuI | GTATCC | 1 cut(s) | 431 |
| Bme1390I | CCNGG | 1 cut(s) | 3 |
| BmgBI | CACGTC | 1 cut(s) | 8 |
| BmiI | GGNNCC | 2 cut(s) | 411, 510 |
| BmrFI | CCNGG | 1 cut(s) | 3 |
| BmsI | GCATC | 1 cut(s) | 281 |
| BpiI | GAAGAC | 2 cut(s) | 112, 315 |
| BpuEI | CTTGAG | 1 cut(s) | 13 |
| BsaHI | GRCGYC | 1 cut(s) | 410 |
| BseBI | CCWGG | 1 cut(s) | 3 |
| BseMII | CTCAG | 2 cut(s) | 250, 619 |
| BseRI | GAGGAG | 1 cut(s) | 601 |
| BshFI | GGCC | 2 cut(s) | 556, 570 |
| BshNI | GGYRCC | 1 cut(s) | 409 |
| BsnI | GGCC | 2 cut(s) | 556, 570 |
| Bsp143I | GATC | 2 cut(s) | 283, 455 |
| BspACI | CCGC | 2 cut(s) | 488, 512 |
| BspANI | GGCC | 2 cut(s) | 556, 570 |
| BspCNI | CTCAG | 2 cut(s) | 249, 620 |
| BspLI | GGNNCC | 2 cut(s) | 411, 510 |
| BspMAI | CTGCAG | 1 cut(s) | 377 |
| BspPI | GGATC | 1 cut(s) | 450 |
| BspT107I | GGYRCC | 1 cut(s) | 409 |
| BssMI | GATC | 2 cut(s) | 283, 455 |
| BssNI | GRCGYC | 1 cut(s) | 410 |
| Bst2UI | CCWGG | 1 cut(s) | 3 |
| Bst4CI | ACNGT | 1 cut(s) | 17 |
| BstACI | GRCGYC | 1 cut(s) | 410 |
| BstC8I | GCNNGC | 1 cut(s) | 25 |
| BstDEI | CTNAG | 7 cut(s) | 56, 236, 349, 400, 432, 580, 628 |
| BstEII | GGTNACC | 1 cut(s) | 483 |
| BstH2I | RGCGCY | 1 cut(s) | 413 |
| BstHHI | GCGC | 1 cut(s) | 412 |
| BstKTI | GATC | 2 cut(s) | 286, 458 |
| BstMBI | GATC | 2 cut(s) | 283, 455 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 48, 416 |
| BstNI | CCWGG | 1 cut(s) | 3 |
| BstPI | GGTNACC | 1 cut(s) | 483 |
| BstSFI | CTRYAG | 1 cut(s) | 373 |
| BstV2I | GAAGAC | 2 cut(s) | 112, 315 |
| BsuI | GTATCC | 1 cut(s) | 431 |
| BsuRI | GGCC | 2 cut(s) | 556, 570 |
| BtgZI | GCGATG | 1 cut(s) | 309 |
| BtrI | CACGTC | 1 cut(s) | 8 |
| Cac8I | GCNNGC | 1 cut(s) | 25 |
| CfoI | GCGC | 1 cut(s) | 412 |
| CviAII | CATG | 4 cut(s) | 156, 475, 505, 558 |
| CviJI | RGCY | 7 cut(s) | 27, 119, 196, 556, 570, 586, 609 |
| CviKI_1 | RGCY | 7 cut(s) | 27, 119, 196, 556, 570, 586, 609 |
| DdeI | CTNAG | 7 cut(s) | 56, 236, 349, 400, 432, 580, 628 |
| DinI | GGCGCC | 1 cut(s) | 411 |
| DpnI | GATC | 2 cut(s) | 285, 457 |
| DpnII | GATC | 2 cut(s) | 283, 455 |
| EaeI | YGGCCR | 1 cut(s) | 554 |
| Eco91I | GGTNACC | 1 cut(s) | 483 |
| EcoO65I | GGTNACC | 1 cut(s) | 483 |
| EgeI | GGCGCC | 1 cut(s) | 411 |
| EheI | GGCGCC | 1 cut(s) | 411 |
| FaeI | CATG | 4 cut(s) | 159, 478, 508, 561 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 380, 412 |
| FatI | CATG | 4 cut(s) | 155, 474, 504, 557 |
| FspBI | CTAG | 2 cut(s) | 112, 177 |
| GlaI | GCGC | 1 cut(s) | 411 |
| HaeII | RGCGCY | 1 cut(s) | 413 |
| HaeIII | GGCC | 2 cut(s) | 556, 570 |
| HhaI | GCGC | 1 cut(s) | 412 |
| Hin1I | GRCGYC | 1 cut(s) | 410 |
| Hin1II | CATG | 4 cut(s) | 159, 478, 508, 561 |
| Hin6I | GCGC | 1 cut(s) | 410 |
| HinP1I | GCGC | 1 cut(s) | 410 |
| HincII | GTYRAC | 1 cut(s) | 13 |
| HindII | GTYRAC | 1 cut(s) | 13 |
| HinfI | GANTC | 5 cut(s) | 159, 311, 361, 382, 624 |
| HpaI | GTTAAC | 1 cut(s) | 13 |
| HphI | GGTGA | 1 cut(s) | 576 |
| Hpy166II | GTNNAC | 2 cut(s) | 13, 522 |
| Hpy188I | TCNGA | 3 cut(s) | 239, 455, 629 |
| Hpy188III | TCNNGA | 5 cut(s) | 30, 171, 225, 445, 649 |
| Hpy8I | GTNNAC | 2 cut(s) | 13, 522 |
| HpyAV | CCTTC | 3 cut(s) | 109, 332, 474 |
| HpyCH4III | ACNGT | 1 cut(s) | 17 |
| HpyCH4IV | ACGT | 4 cut(s) | 7, 151, 449, 524 |
| HpyCH4V | TGCA | 2 cut(s) | 336, 375 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 48, 416 |
| HpyF3I | CTNAG | 7 cut(s) | 56, 236, 349, 400, 432, 580, 628 |
| HpySE526I | ACGT | 4 cut(s) | 7, 151, 449, 524 |
| Hsp92I | GRCGYC | 1 cut(s) | 410 |
| Hsp92II | CATG | 4 cut(s) | 159, 478, 508, 561 |
| HspAI | GCGC | 1 cut(s) | 410 |
| KasI | GGCGCC | 1 cut(s) | 409 |
| KspAI | GTTAAC | 1 cut(s) | 13 |
| Kzo9I | GATC | 2 cut(s) | 283, 455 |
| LmnI | GCTCC | 1 cut(s) | 614 |
| LpnPI | CCDG | 6 cut(s) | 15, 177, 184, 430, 500, 538 |
| LweI | GCATC | 1 cut(s) | 281 |
| MaeI | CTAG | 2 cut(s) | 112, 177 |
| MaeII | ACGT | 4 cut(s) | 7, 151, 449, 524 |
| MaeIII | GTNAC | 2 cut(s) | 368, 483 |
| MalI | GATC | 2 cut(s) | 285, 457 |
| MboI | GATC | 2 cut(s) | 283, 455 |
| MboII | GAAGA | 4 cut(s) | 114, 117, 147, 320 |
| MlsI | TGGCCA | 1 cut(s) | 556 |
| MluCI | AATT | 3 cut(s) | 74, 267, 615 |
| MluNI | TGGCCA | 1 cut(s) | 556 |
| Mly113I | GGCGCC | 1 cut(s) | 410 |
| MlyI | GAGTC | 3 cut(s) | 153, 305, 633 |
| MnlI | CCTC | 9 cut(s) | 53, 180, 207, 399, 530, 534, 560, 560, 622 |
| Mox20I | TGGCCA | 1 cut(s) | 556 |
| MroXI | GAANNNNTTC | 1 cut(s) | 244 |
| MscI | TGGCCA | 1 cut(s) | 556 |
| MseI | TTAA | 4 cut(s) | 12, 253, 261, 618 |
| MslI | CAYNNNNRTG | 3 cut(s) | 205, 562, 592 |
| Msp20I | TGGCCA | 1 cut(s) | 556 |
| MspR9I | CCNGG | 1 cut(s) | 3 |
| MvaI | CCWGG | 1 cut(s) | 3 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 48, 416 |
| NarI | GGCGCC | 1 cut(s) | 410 |
| NdeII | GATC | 2 cut(s) | 283, 455 |
| NlaIII | CATG | 4 cut(s) | 159, 478, 508, 561 |
| NlaIV | GGNNCC | 2 cut(s) | 411, 510 |
| OliI | CACNNNNGTG | 1 cut(s) | 205 |
| PdmI | GAANNNNTTC | 1 cut(s) | 244 |
| PfeI | GAWTC | 2 cut(s) | 361, 382 |
| PleI | GAGTC | 3 cut(s) | 153, 305, 632 |
| PluTI | GGCGCC | 1 cut(s) | 413 |
| PpsI | GAGTC | 3 cut(s) | 153, 305, 632 |
| PshBI | ATTAAT | 1 cut(s) | 618 |
| PspEI | GGTNACC | 1 cut(s) | 483 |
| PspN4I | GGNNCC | 2 cut(s) | 411, 510 |
| PstI | CTGCAG | 1 cut(s) | 377 |
| RseI | CAYNNNNRTG | 3 cut(s) | 205, 562, 592 |
| SaqAI | TTAA | 4 cut(s) | 12, 253, 261, 618 |
| Sau3AI | GATC | 2 cut(s) | 283, 455 |
| SchI | GAGTC | 3 cut(s) | 153, 305, 633 |
| ScrFI | CCNGG | 1 cut(s) | 3 |
| SfaNI | GCATC | 1 cut(s) | 281 |
| SfcI | CTRYAG | 1 cut(s) | 373 |
| SfoI | GGCGCC | 1 cut(s) | 411 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 205, 562, 592 |
| SmlI | CTYRAG | 1 cut(s) | 28 |
| SmoI | CTYRAG | 1 cut(s) | 28 |
| Sse9I | AATT | 3 cut(s) | 74, 267, 615 |
| SsiI | CCGC | 2 cut(s) | 488, 512 |
| SspDI | GGCGCC | 1 cut(s) | 409 |
| SspMI | CTAG | 2 cut(s) | 112, 177 |
| TaaI | ACNGT | 1 cut(s) | 17 |
| TaiI | ACGT | 4 cut(s) | 10, 154, 452, 527 |
| TaqI | TCGA | 2 cut(s) | 133, 359 |
| TasI | AATT | 3 cut(s) | 74, 267, 615 |
| TfiI | GAWTC | 2 cut(s) | 361, 382 |
| Tru1I | TTAA | 4 cut(s) | 12, 253, 261, 618 |
| Tru9I | TTAA | 4 cut(s) | 12, 253, 261, 618 |
| VspI | ATTAAT | 1 cut(s) | 618 |
| XmnI | GAANNNNTTC | 1 cut(s) | 244 |
| XspI | CTAG | 2 cut(s) | 112, 177 |