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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 33, 315 |
| AclWI | GGATC | 1 cut(s) | 428 |
| AcsI | RAATTY | 1 cut(s) | 382 |
| AfaI | GTAC | 1 cut(s) | 202 |
| AgsI | TTSAA | 1 cut(s) | 330 |
| AjiI | CACGTC | 1 cut(s) | 90 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 242, 274 |
| AluBI | AGCT | 2 cut(s) | 109, 115 |
| AluI | AGCT | 2 cut(s) | 109, 115 |
| Alw26I | GTCTC | 1 cut(s) | 246 |
| AlwI | GGATC | 1 cut(s) | 428 |
| Ama87I | CYCGRG | 1 cut(s) | 73 |
| ApeKI | GCWGC | 1 cut(s) | 133 |
| ApoI | RAATTY | 1 cut(s) | 382 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 359 |
| AvaI | CYCGRG | 1 cut(s) | 73 |
| BbsI | GAAGAC | 1 cut(s) | 227 |
| BbvI | GCAGC | 1 cut(s) | 145 |
| BccI | CCATC | 3 cut(s) | 169, 296, 411 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 392, 426 |
| BcoDI | GTCTC | 1 cut(s) | 246 |
| BfaI | CTAG | 1 cut(s) | 292 |
| BfmI | CTRYAG | 1 cut(s) | 50 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 142 |
| BisI | GCNGC | 1 cut(s) | 134 |
| BlsI | GCNGC | 1 cut(s) | 135 |
| BmeT110I | CYCGRG | 1 cut(s) | 73 |
| BmgBI | CACGTC | 1 cut(s) | 90 |
| BmsI | GCATC | 1 cut(s) | 48 |
| BpiI | GAAGAC | 1 cut(s) | 227 |
| BpmI | CTGGAG | 1 cut(s) | 181 |
| BpuEI | CTTGAG | 2 cut(s) | 28, 95 |
| Bsa29I | ATCGAT | 1 cut(s) | 402 |
| BsaI | GGTCTC | 1 cut(s) | 246 |
| Bse1I | ACTGG | 1 cut(s) | 198 |
| BseCI | ATCGAT | 1 cut(s) | 402 |
| BseGI | GGATG | 2 cut(s) | 164, 192 |
| BseNI | ACTGG | 1 cut(s) | 198 |
| BseXI | GCAGC | 1 cut(s) | 145 |
| BshVI | ATCGAT | 1 cut(s) | 402 |
| BsiHKCI | CYCGRG | 1 cut(s) | 73 |
| BsmAI | GTCTC | 1 cut(s) | 246 |
| Bso31I | GGTCTC | 1 cut(s) | 246 |
| BsoBI | CYCGRG | 1 cut(s) | 73 |
| Bsp143I | GATC | 1 cut(s) | 420 |
| BspACI | CCGC | 2 cut(s) | 33, 315 |
| BspDI | ATCGAT | 1 cut(s) | 402 |
| BspHI | TCATGA | 1 cut(s) | 433 |
| BspPI | GGATC | 1 cut(s) | 428 |
| BspTNI | GGTCTC | 1 cut(s) | 246 |
| BsrI | ACTGG | 1 cut(s) | 198 |
| BssMI | GATC | 1 cut(s) | 420 |
| Bst4CI | ACNGT | 1 cut(s) | 99 |
| BstC8I | GCNNGC | 2 cut(s) | 37, 107 |
| BstDEI | CTNAG | 1 cut(s) | 138 |
| BstF5I | GGATG | 2 cut(s) | 164, 192 |
| BstKTI | GATC | 1 cut(s) | 423 |
| BstMAI | GTCTC | 1 cut(s) | 246 |
| BstMBI | GATC | 1 cut(s) | 420 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 121, 130, 142, 151 |
| BstSFI | CTRYAG | 1 cut(s) | 50 |
| BstV1I | GCAGC | 1 cut(s) | 145 |
| BstV2I | GAAGAC | 1 cut(s) | 227 |
| Bsu15I | ATCGAT | 1 cut(s) | 402 |
| BsuTUI | ATCGAT | 1 cut(s) | 402 |
| BtrI | CACGTC | 1 cut(s) | 90 |
| BtsCI | GGATG | 2 cut(s) | 164, 192 |
| Cac8I | GCNNGC | 2 cut(s) | 37, 107 |
| CciI | TCATGA | 1 cut(s) | 433 |
| ClaI | ATCGAT | 1 cut(s) | 402 |
| Csp6I | GTAC | 1 cut(s) | 201 |
| CviAII | CATG | 1 cut(s) | 434 |
| CviJI | RGCY | 8 cut(s) | 49, 78, 109, 115, 136, 160, 234, 311 |
| CviKI_1 | RGCY | 8 cut(s) | 49, 78, 109, 115, 136, 160, 234, 311 |
| CviQI | GTAC | 1 cut(s) | 201 |
| DdeI | CTNAG | 1 cut(s) | 138 |
| DpnI | GATC | 1 cut(s) | 422 |
| DpnII | GATC | 1 cut(s) | 420 |
| EciI | GGCGGA | 1 cut(s) | 22 |
| Eco31I | GGTCTC | 1 cut(s) | 246 |
| Eco32I | GATATC | 2 cut(s) | 10, 30 |
| Eco88I | CYCGRG | 1 cut(s) | 73 |
| EcoRI | GAATTC | 1 cut(s) | 382 |
| EcoRV | GATATC | 2 cut(s) | 10, 30 |
| FaeI | CATG | 1 cut(s) | 437 |
| FaiI | YATR | 9 cut(s) | 52, 67, 182, 184, 209, 211, 308, 347, 435 |
| FatI | CATG | 1 cut(s) | 433 |
| FauNDI | CATATG | 1 cut(s) | 182 |
| Fnu4HI | GCNGC | 1 cut(s) | 134 |
| FokI | GGATG | 2 cut(s) | 151, 199 |
| Fsp4HI | GCNGC | 1 cut(s) | 134 |
| FspBI | CTAG | 1 cut(s) | 292 |
| GluI | GCNGC | 1 cut(s) | 134 |
| GsuI | CTGGAG | 1 cut(s) | 181 |
| Hin1II | CATG | 1 cut(s) | 437 |
| HindIII | AAGCTT | 1 cut(s) | 113 |
| HinfI | GANTC | 6 cut(s) | 56, 69, 174, 190, 274, 399 |
| Hpy166II | GTNNAC | 1 cut(s) | 391 |
| Hpy188I | TCNGA | 1 cut(s) | 354 |
| Hpy188III | TCNNGA | 6 cut(s) | 5, 25, 73, 286, 340, 434 |
| Hpy8I | GTNNAC | 1 cut(s) | 391 |
| HpyAV | CCTTC | 1 cut(s) | 224 |
| HpyCH4III | ACNGT | 1 cut(s) | 99 |
| HpyCH4IV | ACGT | 2 cut(s) | 89, 266 |
| HpyCH4V | TGCA | 1 cut(s) | 413 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 121, 130, 142, 151 |
| HpyF3I | CTNAG | 1 cut(s) | 138 |
| HpySE526I | ACGT | 2 cut(s) | 89, 266 |
| Hsp92II | CATG | 1 cut(s) | 437 |
| Kzo9I | GATC | 1 cut(s) | 420 |
| LmnI | GCTCC | 1 cut(s) | 200 |
| LpnPI | CCDG | 5 cut(s) | 49, 70, 211, 240, 299 |
| Lsp1109I | GCAGC | 1 cut(s) | 145 |
| LweI | GCATC | 1 cut(s) | 48 |
| MaeI | CTAG | 1 cut(s) | 292 |
| MaeII | ACGT | 2 cut(s) | 89, 266 |
| MaeIII | GTNAC | 1 cut(s) | 271 |
| MalI | GATC | 1 cut(s) | 422 |
| MboI | GATC | 1 cut(s) | 420 |
| MboII | GAAGA | 3 cut(s) | 229, 232, 262 |
| MluCI | AATT | 1 cut(s) | 382 |
| MlyI | GAGTC | 2 cut(s) | 168, 268 |
| MnlI | CCTC | 2 cut(s) | 135, 322 |
| MroXI | GAANNNNTTC | 1 cut(s) | 359 |
| MseI | TTAA | 2 cut(s) | 368, 376 |
| MslI | CAYNNNNRTG | 2 cut(s) | 169, 185 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 121, 130, 142, 151 |
| NdeI | CATATG | 1 cut(s) | 182 |
| NdeII | GATC | 1 cut(s) | 420 |
| NlaIII | CATG | 1 cut(s) | 437 |
| NmuCI | GTSAC | 1 cut(s) | 271 |
| PaeR7I | CTCGAG | 1 cut(s) | 73 |
| PagI | TCATGA | 1 cut(s) | 433 |
| PdmI | GAANNNNTTC | 1 cut(s) | 359 |
| PfeI | GAWTC | 4 cut(s) | 56, 69, 190, 399 |
| PkrI | GCNGC | 1 cut(s) | 135 |
| PleI | GAGTC | 2 cut(s) | 168, 268 |
| PpsI | GAGTC | 2 cut(s) | 168, 268 |
| RsaI | GTAC | 1 cut(s) | 202 |
| RsaNI | GTAC | 1 cut(s) | 201 |
| RseI | CAYNNNNRTG | 2 cut(s) | 169, 185 |
| SaqAI | TTAA | 2 cut(s) | 368, 376 |
| SatI | GCNGC | 1 cut(s) | 134 |
| Sau3AI | GATC | 1 cut(s) | 420 |
| SchI | GAGTC | 2 cut(s) | 168, 268 |
| SetI | ASST | 7 cut(s) | 19, 92, 111, 117, 269, 293, 431 |
| SfaNI | GCATC | 1 cut(s) | 48 |
| SfcI | CTRYAG | 1 cut(s) | 50 |
| Sfr274I | CTCGAG | 1 cut(s) | 73 |
| SlaI | CTCGAG | 1 cut(s) | 73 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 169, 185 |
| SmlI | CTYRAG | 3 cut(s) | 43, 73, 110 |
| SmoI | CTYRAG | 3 cut(s) | 43, 73, 110 |
| Sse9I | AATT | 1 cut(s) | 382 |
| SsiI | CCGC | 2 cut(s) | 33, 315 |
| SspMI | CTAG | 1 cut(s) | 292 |
| TaaI | ACNGT | 1 cut(s) | 99 |
| TaiI | ACGT | 2 cut(s) | 92, 269 |
| TaqI | TCGA | 4 cut(s) | 74, 248, 397, 402 |
| TasI | AATT | 1 cut(s) | 382 |
| TfiI | GAWTC | 4 cut(s) | 56, 69, 190, 399 |
| Tru1I | TTAA | 2 cut(s) | 368, 376 |
| Tru9I | TTAA | 2 cut(s) | 368, 376 |
| TseFI | GTSAC | 1 cut(s) | 271 |
| TseI | GCWGC | 1 cut(s) | 133 |
| Tsp45I | GTSAC | 1 cut(s) | 271 |
| TspDTI | ATGAA | 3 cut(s) | 226, 230, 422 |
| TspGWI | ACGGA | 1 cut(s) | 259 |
| XapI | RAATTY | 1 cut(s) | 382 |
| XhoI | CTCGAG | 1 cut(s) | 73 |
| XmnI | GAANNNNTTC | 1 cut(s) | 359 |
| XspI | CTAG | 1 cut(s) | 292 |