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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 469 |
| AatII | GACGTC | 1 cut(s) | 360 |
| Acc36I | ACCTGC | 2 cut(s) | 257, 469 |
| AccB1I | GGYRCC | 1 cut(s) | 227 |
| AccBSI | CCGCTC | 1 cut(s) | 470 |
| AciI | CCGC | 5 cut(s) | 33, 36, 470, 565, 847 |
| AclWI | GGATC | 1 cut(s) | 26 |
| AcsI | RAATTY | 2 cut(s) | 115, 914 |
| AcuI | CTGAAG | 2 cut(s) | 303, 354 |
| AcyI | GRCGYC | 2 cut(s) | 251, 357 |
| AfaI | GTAC | 2 cut(s) | 135, 734 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 100, 158, 238, 469 |
| AgsI | TTSAA | 3 cut(s) | 397, 436, 862 |
| AjiI | CACGTC | 1 cut(s) | 622 |
| AjnI | CCWGG | 2 cut(s) | 151, 615 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 774, 806 |
| AluBI | AGCT | 5 cut(s) | 48, 181, 300, 432, 647 |
| AluI | AGCT | 5 cut(s) | 48, 181, 300, 432, 647 |
| Alw26I | GTCTC | 1 cut(s) | 778 |
| AlwI | GGATC | 1 cut(s) | 26 |
| Ama87I | CYCGRG | 1 cut(s) | 605 |
| AoxI | GGCC | 1 cut(s) | 579 |
| ApeKI | GCWGC | 3 cut(s) | 197, 263, 665 |
| ApoI | RAATTY | 2 cut(s) | 115, 914 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 891 |
| AspS9I | GGNCC | 3 cut(s) | 124, 451, 727 |
| AsuC2I | CCSGG | 1 cut(s) | 449 |
| AsuHPI | GGTGA | 2 cut(s) | 13, 65 |
| AvaI | CYCGRG | 1 cut(s) | 605 |
| AvaII | GGWCC | 3 cut(s) | 124, 451, 727 |
| BaeGI | GKGCMC | 1 cut(s) | 232 |
| BanI | GGYRCC | 1 cut(s) | 227 |
| BanII | GRGCYC | 1 cut(s) | 293 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 947, 979 |
| BbsI | GAAGAC | 3 cut(s) | 342, 759, 962 |
| BbvI | GCAGC | 3 cut(s) | 209, 250, 677 |
| BccI | CCATC | 6 cut(s) | 137, 316, 578, 701, 828, 980 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 255, 289 |
| BciT130I | CCWGG | 2 cut(s) | 153, 617 |
| BcnI | CCSGG | 1 cut(s) | 449 |
| BcoDI | GTCTC | 1 cut(s) | 778 |
| BfaI | CTAG | 2 cut(s) | 593, 612 |
| BfmI | CTRYAG | 1 cut(s) | 264 |
| BfuAI | ACCTGC | 2 cut(s) | 257, 469 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 674 |
| BisI | GCNGC | 5 cut(s) | 34, 198, 264, 471, 666 |
| BlsI | GCNGC | 5 cut(s) | 35, 199, 265, 472, 667 |
| Bme1390I | CCNGG | 3 cut(s) | 153, 449, 617 |
| Bme18I | GGWCC | 3 cut(s) | 124, 451, 727 |
| BmeT110I | CYCGRG | 1 cut(s) | 605 |
| BmgBI | CACGTC | 1 cut(s) | 622 |
| BmgT120I | GGNCC | 3 cut(s) | 124, 451, 727 |
| BmiI | GGNNCC | 4 cut(s) | 229, 330, 373, 452 |
| BmrFI | CCNGG | 3 cut(s) | 153, 449, 617 |
| BmsI | GCATC | 1 cut(s) | 580 |
| BpiI | GAAGAC | 3 cut(s) | 342, 759, 962 |
| BpuEI | CTTGAG | 3 cut(s) | 265, 560, 627 |
| BpuMI | CCSGG | 1 cut(s) | 449 |
| BsaHI | GRCGYC | 2 cut(s) | 251, 357 |
| BsaI | GGTCTC | 1 cut(s) | 778 |
| BsaJI | CCNNGG | 2 cut(s) | 99, 463 |
| BsaWI | WCCGGW | 1 cut(s) | 416 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 459, 489 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 100, 158, 238, 469 |
| Bse1I | ACTGG | 2 cut(s) | 426, 730 |
| Bse3DI | GCAATG | 1 cut(s) | 802 |
| BseBI | CCWGG | 2 cut(s) | 153, 617 |
| BseDI | CCNNGG | 2 cut(s) | 99, 463 |
| BseGI | GGATG | 2 cut(s) | 696, 724 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 100, 158, 238, 469 |
| BseMI | GCAATG | 1 cut(s) | 802 |
| BseMII | CTCAG | 2 cut(s) | 5, 379 |
| BseNI | ACTGG | 2 cut(s) | 426, 730 |
| BseSI | GKGCMC | 1 cut(s) | 232 |
| BseXI | GCAGC | 3 cut(s) | 209, 250, 677 |
| BsgI | GTGCAG | 2 cut(s) | 216, 497 |
| BshFI | GGCC | 1 cut(s) | 581 |
| BshNI | GGYRCC | 1 cut(s) | 227 |
| BsiHKCI | CYCGRG | 1 cut(s) | 605 |
| BsiSI | CCGG | 2 cut(s) | 417, 448 |
| BsiWI | CGTACG | 1 cut(s) | 133 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 100, 158, 238, 469 |
| BsmAI | GTCTC | 1 cut(s) | 778 |
| BsnI | GGCC | 1 cut(s) | 581 |
| Bso31I | GGTCTC | 1 cut(s) | 778 |
| BsoBI | CYCGRG | 1 cut(s) | 605 |
| Bsp1286I | GDGCHC | 2 cut(s) | 232, 293 |
| Bsp143I | GATC | 3 cut(s) | 10, 18, 382 |
| Bsp19I | CCATGG | 1 cut(s) | 463 |
| BspACI | CCGC | 5 cut(s) | 33, 36, 470, 565, 847 |
| BspANI | GGCC | 1 cut(s) | 581 |
| BspCNI | CTCAG | 2 cut(s) | 6, 378 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 4 cut(s) | 229, 330, 373, 452 |
| BspMAI | CTGCAG | 1 cut(s) | 268 |
| BspMI | ACCTGC | 2 cut(s) | 257, 469 |
| BspPI | GGATC | 1 cut(s) | 26 |
| BspT107I | GGYRCC | 1 cut(s) | 227 |
| BspTNI | GGTCTC | 1 cut(s) | 778 |
| BsrBI | CCGCTC | 1 cut(s) | 470 |
| BsrDI | GCAATG | 1 cut(s) | 802 |
| BsrI | ACTGG | 2 cut(s) | 426, 730 |
| BssECI | CCNNGG | 2 cut(s) | 99, 463 |
| BssMI | GATC | 3 cut(s) | 10, 18, 382 |
| BssNI | GRCGYC | 2 cut(s) | 251, 357 |
| BssT1I | CCWWGG | 2 cut(s) | 99, 463 |
| Bst2UI | CCWGG | 2 cut(s) | 153, 617 |
| Bst4CI | ACNGT | 2 cut(s) | 188, 631 |
| Bst6I | CTCTTC | 1 cut(s) | 322 |
| BstACI | GRCGYC | 2 cut(s) | 251, 357 |
| BstC8I | GCNNGC | 1 cut(s) | 569 |
| BstDEI | CTNAG | 3 cut(s) | 14, 365, 670 |
| BstDSI | CCRYGG | 1 cut(s) | 463 |
| BstF5I | GGATG | 2 cut(s) | 696, 724 |
| BstKTI | GATC | 3 cut(s) | 13, 21, 385 |
| BstMAI | GTCTC | 1 cut(s) | 778 |
| BstMBI | GATC | 3 cut(s) | 10, 18, 382 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 297, 674, 683 |
| BstNI | CCWGG | 2 cut(s) | 153, 617 |
| BstSCI | CCNGG | 3 cut(s) | 151, 447, 615 |
| BstSFI | CTRYAG | 1 cut(s) | 264 |
| BstSLI | GKGCMC | 1 cut(s) | 232 |
| BstV1I | GCAGC | 3 cut(s) | 209, 250, 677 |
| BstV2I | GAAGAC | 3 cut(s) | 342, 759, 962 |
| BsuRI | GGCC | 1 cut(s) | 581 |
| BtgI | CCRYGG | 1 cut(s) | 463 |
| BtgZI | GCGATG | 1 cut(s) | 956 |
| BtrI | CACGTC | 1 cut(s) | 622 |
| BtsCI | GGATG | 2 cut(s) | 696, 724 |
| BtsI | GCAGTG | 1 cut(s) | 480 |
| BtsIMutI | CAGTG | 3 cut(s) | 193, 373, 480 |
| BveI | ACCTGC | 2 cut(s) | 257, 469 |
| Cac8I | GCNNGC | 1 cut(s) | 569 |
| CciI | TCATGA | 1 cut(s) | 556 |
| Cfr13I | GGNCC | 3 cut(s) | 124, 451, 727 |
| CseI | GACGC | 1 cut(s) | 240 |
| Csp6I | GTAC | 2 cut(s) | 134, 733 |
| CviAII | CATG | 5 cut(s) | 62, 69, 224, 464, 557 |
| CviQI | GTAC | 2 cut(s) | 134, 733 |
| DdeI | CTNAG | 3 cut(s) | 14, 365, 670 |
| DpnI | GATC | 3 cut(s) | 12, 20, 384 |
| DpnII | GATC | 3 cut(s) | 10, 18, 382 |
| Eam1104I | CTCTTC | 1 cut(s) | 322 |
| EarI | CTCTTC | 1 cut(s) | 322 |
| EciI | GGCGGA | 2 cut(s) | 51, 554 |
| Eco130I | CCWWGG | 2 cut(s) | 99, 463 |
| Eco24I | GRGCYC | 1 cut(s) | 293 |
| Eco31I | GGTCTC | 1 cut(s) | 778 |
| Eco32I | GATATC | 1 cut(s) | 931 |
| Eco47I | GGWCC | 3 cut(s) | 124, 451, 727 |
| Eco57I | CTGAAG | 2 cut(s) | 303, 354 |
| Eco88I | CYCGRG | 1 cut(s) | 605 |
| EcoRI | GAATTC | 1 cut(s) | 914 |
| EcoRII | CCWGG | 2 cut(s) | 151, 615 |
| EcoRV | GATATC | 1 cut(s) | 931 |
| EcoT14I | CCWWGG | 2 cut(s) | 99, 463 |
| EcoT38I | GRGCYC | 1 cut(s) | 293 |
| ErhI | CCWWGG | 2 cut(s) | 99, 463 |
| FaeI | CATG | 5 cut(s) | 65, 72, 227, 467, 560 |
| FatI | CATG | 5 cut(s) | 61, 68, 223, 463, 556 |
| FauNDI | CATATG | 2 cut(s) | 409, 714 |
| Fnu4HI | GCNGC | 5 cut(s) | 34, 198, 264, 471, 666 |
| FokI | GGATG | 2 cut(s) | 683, 731 |
| FriOI | GRGCYC | 1 cut(s) | 293 |
| Fsp4HI | GCNGC | 5 cut(s) | 34, 198, 264, 471, 666 |
| FspBI | CTAG | 2 cut(s) | 593, 612 |
| GluI | GCNGC | 5 cut(s) | 34, 198, 264, 471, 666 |
| HaeIII | GGCC | 1 cut(s) | 581 |
| HapII | CCGG | 2 cut(s) | 417, 448 |
| HgaI | GACGC | 1 cut(s) | 240 |
| Hin1I | GRCGYC | 2 cut(s) | 251, 357 |
| Hin1II | CATG | 5 cut(s) | 65, 72, 227, 467, 560 |
| HindIII | AAGCTT | 2 cut(s) | 430, 645 |
| HinfI | GANTC | 8 cut(s) | 323, 338, 588, 601, 706, 722, 806, 958 |
| HpaII | CCGG | 2 cut(s) | 417, 448 |
| HphI | GGTGA | 2 cut(s) | 13, 65 |
| Hpy188I | TCNGA | 5 cut(s) | 15, 76, 322, 328, 886 |
| Hpy188III | TCNNGA | 7 cut(s) | 244, 255, 454, 557, 605, 818, 872 |
| Hpy99I | CGWCG | 1 cut(s) | 362 |
| HpyAV | CCTTC | 3 cut(s) | 391, 756, 977 |
| HpyCH4III | ACNGT | 2 cut(s) | 188, 631 |
| HpyCH4IV | ACGT | 3 cut(s) | 202, 357, 621 |
| HpyCH4V | TGCA | 6 cut(s) | 91, 197, 223, 266, 478, 981 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 297, 674, 683 |
| HpyF3I | CTNAG | 3 cut(s) | 14, 365, 670 |
| HpySE526I | ACGT | 3 cut(s) | 202, 357, 621 |
| Hsp92I | GRCGYC | 2 cut(s) | 251, 357 |
| Hsp92II | CATG | 5 cut(s) | 65, 72, 227, 467, 560 |
| Kzo9I | GATC | 3 cut(s) | 10, 18, 382 |
| LmnI | GCTCC | 3 cut(s) | 377, 467, 520 |
| Lsp1109I | GCAGC | 3 cut(s) | 209, 250, 677 |
| LweI | GCATC | 1 cut(s) | 580 |
| MaeI | CTAG | 2 cut(s) | 593, 612 |
| MaeII | ACGT | 3 cut(s) | 202, 357, 621 |
| MaeIII | GTNAC | 1 cut(s) | 491 |
| MalI | GATC | 3 cut(s) | 12, 20, 384 |
| MbiI | CCGCTC | 1 cut(s) | 470 |
| MboI | GATC | 3 cut(s) | 10, 18, 382 |
| MboII | GAAGA | 7 cut(s) | 309, 347, 437, 761, 764, 794, 967 |
| MhlI | GDGCHC | 2 cut(s) | 232, 293 |
| MluCI | AATT | 4 cut(s) | 115, 218, 503, 914 |
| MlyI | GAGTC | 4 cut(s) | 332, 700, 800, 952 |
| MmeI | TCCRAC | 2 cut(s) | 99, 151 |
| MnlI | CCTC | 9 cut(s) | 9, 137, 185, 240, 242, 455, 470, 667, 854 |
| MroXI | GAANNNNTTC | 1 cut(s) | 891 |
| MseI | TTAA | 3 cut(s) | 44, 900, 908 |
| MslI | CAYNNNNRTG | 3 cut(s) | 701, 717, 827 |
| MspI | CCGG | 2 cut(s) | 417, 448 |
| MspR9I | CCNGG | 3 cut(s) | 153, 449, 617 |
| MvaI | CCWGG | 2 cut(s) | 153, 617 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 297, 674, 683 |
| NciI | CCSGG | 1 cut(s) | 449 |
| NcoI | CCATGG | 1 cut(s) | 463 |
| NdeI | CATATG | 2 cut(s) | 409, 714 |
| NdeII | GATC | 3 cut(s) | 10, 18, 382 |
| NlaIII | CATG | 5 cut(s) | 65, 72, 227, 467, 560 |
| NlaIV | GGNNCC | 4 cut(s) | 229, 330, 373, 452 |
| PaeR7I | CTCGAG | 1 cut(s) | 605 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PaqCI | CACCTGC | 1 cut(s) | 469 |
| PdmI | GAANNNNTTC | 1 cut(s) | 891 |
| PfeI | GAWTC | 4 cut(s) | 323, 588, 601, 722 |
| Pfl23II | CGTACG | 1 cut(s) | 133 |
| PkrI | GCNGC | 5 cut(s) | 35, 199, 265, 472, 667 |
| PleI | GAGTC | 4 cut(s) | 332, 700, 800, 952 |
| PpsI | GAGTC | 4 cut(s) | 332, 700, 800, 952 |
| Psp6I | CCWGG | 2 cut(s) | 151, 615 |
| PspGI | CCWGG | 2 cut(s) | 151, 615 |
| PspLI | CGTACG | 1 cut(s) | 133 |
| PspN4I | GGNNCC | 4 cut(s) | 229, 330, 373, 452 |
| PspPI | GGNCC | 3 cut(s) | 124, 451, 727 |
| PstI | CTGCAG | 1 cut(s) | 268 |
| RsaI | GTAC | 2 cut(s) | 135, 734 |
| RsaNI | GTAC | 2 cut(s) | 134, 733 |
| RseI | CAYNNNNRTG | 3 cut(s) | 701, 717, 827 |
| SaqAI | TTAA | 3 cut(s) | 44, 900, 908 |
| SatI | GCNGC | 5 cut(s) | 34, 198, 264, 471, 666 |
| Sau3AI | GATC | 3 cut(s) | 10, 18, 382 |
| Sau96I | GGNCC | 3 cut(s) | 124, 451, 727 |
| SchI | GAGTC | 4 cut(s) | 332, 700, 800, 952 |
| ScrFI | CCNGG | 3 cut(s) | 153, 449, 617 |
| SduI | GDGCHC | 2 cut(s) | 232, 293 |
| SfaNI | GCATC | 1 cut(s) | 580 |
| SfcI | CTRYAG | 1 cut(s) | 264 |
| Sfr274I | CTCGAG | 1 cut(s) | 605 |
| SinI | GGWCC | 3 cut(s) | 124, 451, 727 |
| SlaI | CTCGAG | 1 cut(s) | 605 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 701, 717, 827 |
| SmlI | CTYRAG | 4 cut(s) | 244, 575, 605, 642 |
| SmoI | CTYRAG | 4 cut(s) | 244, 575, 605, 642 |
| Sse9I | AATT | 4 cut(s) | 115, 218, 503, 914 |
| SsiI | CCGC | 5 cut(s) | 33, 36, 470, 565, 847 |
| SspMI | CTAG | 2 cut(s) | 593, 612 |
| StyD4I | CCNGG | 3 cut(s) | 151, 447, 615 |
| StyI | CCWWGG | 2 cut(s) | 99, 463 |
| TaaI | ACNGT | 2 cut(s) | 188, 631 |
| TaiI | ACGT | 3 cut(s) | 205, 360, 624 |
| TaqI | TCGA | 6 cut(s) | 9, 234, 360, 485, 606, 780 |
| TaqII | GACCGA | 1 cut(s) | 715 |
| TasI | AATT | 4 cut(s) | 115, 218, 503, 914 |
| TauI | GCSGC | 2 cut(s) | 36, 473 |
| TfiI | GAWTC | 4 cut(s) | 323, 588, 601, 722 |
| Tru1I | TTAA | 3 cut(s) | 44, 900, 908 |
| Tru9I | TTAA | 3 cut(s) | 44, 900, 908 |
| TscAI | CASTG | 3 cut(s) | 193, 373, 480 |
| TseI | GCWGC | 3 cut(s) | 197, 263, 665 |
| TspDTI | ATGAA | 3 cut(s) | 426, 545, 762 |
| TspRI | CASTG | 3 cut(s) | 193, 373, 480 |
| VpaK11BI | GGWCC | 3 cut(s) | 124, 451, 727 |
| XapI | RAATTY | 2 cut(s) | 115, 914 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 221, 461 |
| XhoI | CTCGAG | 1 cut(s) | 605 |
| XmnI | GAANNNNTTC | 1 cut(s) | 891 |
| XspI | CTAG | 2 cut(s) | 593, 612 |
| ZraI | GACGTC | 1 cut(s) | 358 |