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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 795, 840 |
| Acc36I | ACCTGC | 1 cut(s) | 77 |
| AccB1I | GGYRCC | 2 cut(s) | 391, 1040 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1010 |
| AciI | CCGC | 1 cut(s) | 209 |
| AcoI | YGGCCR | 1 cut(s) | 175 |
| AcvI | CACGTG | 1 cut(s) | 962 |
| AcyI | GRCGYC | 3 cut(s) | 143, 460, 1041 |
| AfaI | GTAC | 2 cut(s) | 491, 735 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 334, 857, 858, 1010 |
| AflIII | ACRYGT | 2 cut(s) | 77, 959 |
| AgsI | TTSAA | 5 cut(s) | 183, 312, 577, 584, 613 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 613, 680 |
| AjiI | CACGTC | 1 cut(s) | 1010 |
| AjnI | CCWGG | 1 cut(s) | 1003 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 525, 557 |
| AleI | CACNNNNGTG | 1 cut(s) | 782 |
| AluBI | AGCT | 9 cut(s) | 122, 266, 289, 406, 641, 697, 761, 1001, 1019 |
| AluI | AGCT | 9 cut(s) | 122, 266, 289, 406, 641, 697, 761, 1001, 1019 |
| Alw21I | GWGCWC | 2 cut(s) | 408, 1003 |
| Alw26I | GTCTC | 2 cut(s) | 451, 733 |
| AoxI | GGCC | 4 cut(s) | 175, 920, 991, 1027 |
| ApeKI | GCWGC | 6 cut(s) | 62, 91, 94, 103, 211, 1019 |
| AspLEI | GCGC | 3 cut(s) | 91, 864, 1043 |
| AspS9I | GGNCC | 2 cut(s) | 908, 991 |
| AsuHPI | GGTGA | 1 cut(s) | 101 |
| AsuII | TTCGAA | 1 cut(s) | 365 |
| AsuNHI | GCTAGC | 2 cut(s) | 47, 122 |
| AvaII | GGWCC | 1 cut(s) | 908 |
| BaeGI | GKGCMC | 1 cut(s) | 85 |
| BanI | GGYRCC | 2 cut(s) | 391, 1040 |
| BanII | GRGCYC | 2 cut(s) | 408, 1003 |
| BbrPI | CACGTG | 1 cut(s) | 962 |
| Bbv12I | GWGCWC | 2 cut(s) | 408, 1003 |
| BbvI | GCAGC | 6 cut(s) | 49, 78, 81, 115, 198, 1006 |
| BccI | CCATC | 4 cut(s) | 65, 237, 363, 948 |
| BceAI | ACGGC | 3 cut(s) | 438, 978, 1014 |
| BciT130I | CCWGG | 1 cut(s) | 1005 |
| BciVI | GTATCC | 1 cut(s) | 754 |
| BcoDI | GTCTC | 2 cut(s) | 451, 733 |
| BfaI | CTAG | 4 cut(s) | 48, 123, 510, 530 |
| BfoI | RGCGCY | 1 cut(s) | 1044 |
| BfuAI | ACCTGC | 1 cut(s) | 77 |
| BfuI | GTATCC | 1 cut(s) | 754 |
| BisI | GCNGC | 6 cut(s) | 63, 92, 95, 104, 212, 1020 |
| BlsI | GCNGC | 6 cut(s) | 64, 93, 96, 105, 213, 1021 |
| BmcAI | AGTACT | 1 cut(s) | 735 |
| Bme1390I | CCNGG | 1 cut(s) | 1005 |
| Bme18I | GGWCC | 1 cut(s) | 908 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 613, 680 |
| BmgBI | CACGTC | 1 cut(s) | 1010 |
| BmgT120I | GGNCC | 2 cut(s) | 908, 991 |
| BmiI | GGNNCC | 4 cut(s) | 40, 393, 992, 1042 |
| BmrFI | CCNGG | 1 cut(s) | 1005 |
| BmsI | GCATC | 2 cut(s) | 115, 496 |
| BmtI | GCTAGC | 2 cut(s) | 51, 126 |
| BpmI | CTGGAG | 1 cut(s) | 987 |
| Bpu10I | CCTNAGC | 1 cut(s) | 402 |
| Bpu14I | TTCGAA | 1 cut(s) | 365 |
| BpuEI | CTTGAG | 1 cut(s) | 1008 |
| BsaAI | YACGTR | 1 cut(s) | 962 |
| BsaHI | GRCGYC | 3 cut(s) | 143, 460, 1041 |
| BsaJI | CCNNGG | 3 cut(s) | 172, 994, 1030 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 334, 857, 858, 1010 |
| Bse118I | RCCGGY | 1 cut(s) | 918 |
| Bse1I | ACTGG | 2 cut(s) | 42, 319 |
| BseBI | CCWGG | 1 cut(s) | 1005 |
| BseDI | CCNNGG | 3 cut(s) | 172, 994, 1030 |
| BseGI | GGATG | 3 cut(s) | 229, 239, 511 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 334, 857, 858, 1010 |
| BseMII | CTCAG | 4 cut(s) | 333, 393, 744, 753 |
| BseNI | ACTGG | 2 cut(s) | 42, 319 |
| BseRI | GAGGAG | 2 cut(s) | 554, 1029 |
| BseSI | GKGCMC | 1 cut(s) | 85 |
| BseXI | GCAGC | 6 cut(s) | 49, 78, 81, 115, 198, 1006 |
| BshFI | GGCC | 4 cut(s) | 177, 922, 993, 1029 |
| BshNI | GGYRCC | 2 cut(s) | 391, 1040 |
| BsiHKAI | GWGCWC | 2 cut(s) | 408, 1003 |
| BsiSI | CCGG | 2 cut(s) | 12, 919 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 334, 857, 858, 1010 |
| BsmAI | GTCTC | 2 cut(s) | 451, 733 |
| BsmBI | CGTCTC | 2 cut(s) | 451, 733 |
| BsnI | GGCC | 4 cut(s) | 177, 922, 993, 1029 |
| Bsp119I | TTCGAA | 1 cut(s) | 365 |
| Bsp1286I | GDGCHC | 3 cut(s) | 85, 408, 1003 |
| Bsp143I | GATC | 2 cut(s) | 248, 498 |
| BspACI | CCGC | 1 cut(s) | 209 |
| BspANI | GGCC | 4 cut(s) | 177, 922, 993, 1029 |
| BspCNI | CTCAG | 4 cut(s) | 332, 394, 743, 754 |
| BspLI | GGNNCC | 4 cut(s) | 40, 393, 992, 1042 |
| BspMI | ACCTGC | 1 cut(s) | 77 |
| BspOI | GCTAGC | 2 cut(s) | 51, 126 |
| BspQI | GCTCTTC | 1 cut(s) | 528 |
| BspT104I | TTCGAA | 1 cut(s) | 365 |
| BspT107I | GGYRCC | 2 cut(s) | 391, 1040 |
| BsrFI | RCCGGY | 1 cut(s) | 918 |
| BsrI | ACTGG | 2 cut(s) | 42, 319 |
| BssAI | RCCGGY | 1 cut(s) | 918 |
| BssECI | CCNNGG | 3 cut(s) | 172, 994, 1030 |
| BssMI | GATC | 2 cut(s) | 248, 498 |
| BssNI | GRCGYC | 3 cut(s) | 143, 460, 1041 |
| Bst2UI | CCWGG | 1 cut(s) | 1005 |
| Bst4CI | ACNGT | 1 cut(s) | 332 |
| Bst6I | CTCTTC | 1 cut(s) | 528 |
| BstACI | GRCGYC | 3 cut(s) | 143, 460, 1041 |
| BstBAI | YACGTR | 1 cut(s) | 962 |
| BstBI | TTCGAA | 1 cut(s) | 365 |
| BstC8I | GCNNGC | 3 cut(s) | 17, 49, 124 |
| BstDEI | CTNAG | 4 cut(s) | 319, 402, 730, 762 |
| BstDSI | CCRYGG | 2 cut(s) | 994, 1030 |
| BstEII | GGTNACC | 1 cut(s) | 935 |
| BstF5I | GGATG | 3 cut(s) | 229, 239, 511 |
| BstH2I | RGCGCY | 1 cut(s) | 1044 |
| BstHHI | GCGC | 3 cut(s) | 91, 864, 1043 |
| BstKTI | GATC | 2 cut(s) | 251, 501 |
| BstMAI | GTCTC | 2 cut(s) | 451, 733 |
| BstMBI | GATC | 2 cut(s) | 248, 498 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 100, 103, 868 |
| BstNI | CCWGG | 1 cut(s) | 1005 |
| BstNSI | RCATGY | 1 cut(s) | 81 |
| BstPI | GGTNACC | 1 cut(s) | 935 |
| BstSCI | CCNGG | 1 cut(s) | 1003 |
| BstSLI | GKGCMC | 1 cut(s) | 85 |
| BstV1I | GCAGC | 6 cut(s) | 49, 78, 81, 115, 198, 1006 |
| BsuI | GTATCC | 1 cut(s) | 754 |
| BsuRI | GGCC | 4 cut(s) | 177, 922, 993, 1029 |
| BtgI | CCRYGG | 2 cut(s) | 994, 1030 |
| BtgZI | GCGATG | 1 cut(s) | 43 |
| BtrI | CACGTC | 1 cut(s) | 1010 |
| BtsCI | GGATG | 3 cut(s) | 229, 239, 511 |
| BtsI | GCAGTG | 1 cut(s) | 438 |
| BtsIMutI | CAGTG | 3 cut(s) | 49, 438, 603 |
| BveI | ACCTGC | 1 cut(s) | 77 |
| Cac8I | GCNNGC | 3 cut(s) | 17, 49, 124 |
| CfoI | GCGC | 3 cut(s) | 91, 864, 1043 |
| Cfr10I | RCCGGY | 1 cut(s) | 918 |
| Cfr13I | GGNCC | 2 cut(s) | 908, 991 |
| CseI | GACGC | 2 cut(s) | 151, 468 |
| Csp6I | GTAC | 2 cut(s) | 490, 734 |
| CviAII | CATG | 7 cut(s) | 78, 301, 466, 493, 658, 770, 972 |
| CviQI | GTAC | 2 cut(s) | 490, 734 |
| DdeI | CTNAG | 4 cut(s) | 319, 402, 730, 762 |
| DinI | GGCGCC | 1 cut(s) | 1042 |
| DpnI | GATC | 2 cut(s) | 250, 500 |
| DpnII | GATC | 2 cut(s) | 248, 498 |
| DriI | GACNNNNNGTC | 2 cut(s) | 613, 680 |
| EaeI | YGGCCR | 1 cut(s) | 175 |
| Eam1104I | CTCTTC | 1 cut(s) | 528 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 613, 680 |
| EarI | CTCTTC | 1 cut(s) | 528 |
| Ecl136II | GAGCTC | 2 cut(s) | 406, 1001 |
| Eco24I | GRGCYC | 2 cut(s) | 408, 1003 |
| Eco47I | GGWCC | 1 cut(s) | 908 |
| Eco53kI | GAGCTC | 2 cut(s) | 406, 1001 |
| Eco72I | CACGTG | 1 cut(s) | 962 |
| Eco91I | GGTNACC | 1 cut(s) | 935 |
| EcoICRI | GAGCTC | 2 cut(s) | 406, 1001 |
| EcoO65I | GGTNACC | 1 cut(s) | 935 |
| EcoRII | CCWGG | 1 cut(s) | 1003 |
| EcoT38I | GRGCYC | 2 cut(s) | 408, 1003 |
| EgeI | GGCGCC | 1 cut(s) | 1042 |
| EheI | GGCGCC | 1 cut(s) | 1042 |
| Esp3I | CGTCTC | 2 cut(s) | 451, 733 |
| FaeI | CATG | 7 cut(s) | 81, 304, 469, 496, 661, 773, 975 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 278, 310 |
| FatI | CATG | 7 cut(s) | 77, 300, 465, 492, 657, 769, 971 |
| Fnu4HI | GCNGC | 6 cut(s) | 63, 92, 95, 104, 212, 1020 |
| FokI | GGATG | 3 cut(s) | 216, 226, 518 |
| FriOI | GRGCYC | 2 cut(s) | 408, 1003 |
| Fsp4HI | GCNGC | 6 cut(s) | 63, 92, 95, 104, 212, 1020 |
| FspBI | CTAG | 4 cut(s) | 48, 123, 510, 530 |
| GlaI | GCGC | 3 cut(s) | 90, 863, 1042 |
| GluI | GCNGC | 6 cut(s) | 63, 92, 95, 104, 212, 1020 |
| GsuI | CTGGAG | 1 cut(s) | 987 |
| HaeII | RGCGCY | 1 cut(s) | 1044 |
| HaeIII | GGCC | 4 cut(s) | 177, 922, 993, 1029 |
| HapII | CCGG | 2 cut(s) | 12, 919 |
| HgaI | GACGC | 2 cut(s) | 151, 468 |
| HhaI | GCGC | 3 cut(s) | 91, 864, 1043 |
| Hin1I | GRCGYC | 3 cut(s) | 143, 460, 1041 |
| Hin1II | CATG | 7 cut(s) | 81, 304, 469, 496, 661, 773, 975 |
| Hin6I | GCGC | 3 cut(s) | 89, 862, 1041 |
| HinP1I | GCGC | 3 cut(s) | 89, 862, 1041 |
| HindIII | AAGCTT | 1 cut(s) | 264 |
| HinfI | GANTC | 4 cut(s) | 8, 308, 557, 600 |
| HpaII | CCGG | 2 cut(s) | 12, 919 |
| HphI | GGTGA | 1 cut(s) | 101 |
| Hpy166II | GTNNAC | 1 cut(s) | 826 |
| Hpy188I | TCNGA | 6 cut(s) | 141, 322, 482, 625, 637, 945 |
| Hpy188III | TCNNGA | 2 cut(s) | 451, 1053 |
| Hpy8I | GTNNAC | 1 cut(s) | 826 |
| HpyAV | CCTTC | 8 cut(s) | 138, 146, 196, 571, 730, 926, 944, 981 |
| HpyCH4III | ACNGT | 1 cut(s) | 332 |
| HpyCH4IV | ACGT | 4 cut(s) | 117, 961, 979, 1009 |
| HpyCH4V | TGCA | 4 cut(s) | 65, 103, 527, 848 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 100, 103, 868 |
| HpyF3I | CTNAG | 4 cut(s) | 319, 402, 730, 762 |
| HpySE526I | ACGT | 4 cut(s) | 117, 961, 979, 1009 |
| Hsp92I | GRCGYC | 3 cut(s) | 143, 460, 1041 |
| Hsp92II | CATG | 7 cut(s) | 81, 304, 469, 496, 661, 773, 975 |
| HspAI | GCGC | 3 cut(s) | 89, 862, 1041 |
| KasI | GGCGCC | 1 cut(s) | 1040 |
| Kzo9I | GATC | 2 cut(s) | 248, 498 |
| LguI | GCTCTTC | 1 cut(s) | 528 |
| LmnI | GCTCC | 6 cut(s) | 38, 588, 646, 998, 1006, 1016 |
| Lsp1109I | GCAGC | 6 cut(s) | 49, 78, 81, 115, 198, 1006 |
| LweI | GCATC | 2 cut(s) | 115, 496 |
| MaeI | CTAG | 4 cut(s) | 48, 123, 510, 530 |
| MaeII | ACGT | 4 cut(s) | 117, 961, 979, 1009 |
| MaeIII | GTNAC | 4 cut(s) | 337, 682, 935, 965 |
| MalI | GATC | 2 cut(s) | 250, 500 |
| MboI | GATC | 2 cut(s) | 248, 498 |
| MboII | GAAGA | 3 cut(s) | 545, 799, 1041 |
| MhlI | GDGCHC | 3 cut(s) | 85, 408, 1003 |
| MluCI | AATT | 4 cut(s) | 699, 790, 796, 835 |
| Mly113I | GGCGCC | 1 cut(s) | 1041 |
| MseI | TTAA | 3 cut(s) | 261, 800, 885 |
| MslI | CAYNNNNRTG | 3 cut(s) | 452, 782, 945 |
| MspA1I | CMGCKG | 1 cut(s) | 211 |
| MspI | CCGG | 2 cut(s) | 12, 919 |
| MspR9I | CCNGG | 1 cut(s) | 1005 |
| MvaI | CCWGG | 1 cut(s) | 1005 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 100, 103, 868 |
| NarI | GGCGCC | 1 cut(s) | 1041 |
| NdeII | GATC | 2 cut(s) | 248, 498 |
| NheI | GCTAGC | 2 cut(s) | 47, 122 |
| NlaIII | CATG | 7 cut(s) | 81, 304, 469, 496, 661, 773, 975 |
| NlaIV | GGNNCC | 4 cut(s) | 40, 393, 992, 1042 |
| NmeAIII | GCCGAG | 1 cut(s) | 153 |
| NmuCI | GTSAC | 2 cut(s) | 337, 682 |
| NspI | RCATGY | 1 cut(s) | 81 |
| NspV | TTCGAA | 1 cut(s) | 365 |
| OliI | CACNNNNGTG | 1 cut(s) | 782 |
| PciI | ACATGT | 1 cut(s) | 77 |
| PciSI | GCTCTTC | 1 cut(s) | 528 |
| PfeI | GAWTC | 4 cut(s) | 8, 308, 557, 600 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1010 |
| PfoI | TCCNGGA | 1 cut(s) | 1003 |
| PkrI | GCNGC | 6 cut(s) | 64, 93, 96, 105, 213, 1021 |
| PluTI | GGCGCC | 1 cut(s) | 1044 |
| PmaCI | CACGTG | 1 cut(s) | 962 |
| PmlI | CACGTG | 1 cut(s) | 962 |
| Ppu21I | YACGTR | 1 cut(s) | 962 |
| PscI | ACATGT | 1 cut(s) | 77 |
| PsiI | TTATAA | 2 cut(s) | 795, 840 |
| Psp124BI | GAGCTC | 2 cut(s) | 408, 1003 |
| Psp6I | CCWGG | 1 cut(s) | 1003 |
| PspCI | CACGTG | 1 cut(s) | 962 |
| PspEI | GGTNACC | 1 cut(s) | 935 |
| PspGI | CCWGG | 1 cut(s) | 1003 |
| PspN4I | GGNNCC | 4 cut(s) | 40, 393, 992, 1042 |
| PspPI | GGNCC | 2 cut(s) | 908, 991 |
| RsaI | GTAC | 2 cut(s) | 491, 735 |
| RsaNI | GTAC | 2 cut(s) | 490, 734 |
| RseI | CAYNNNNRTG | 3 cut(s) | 452, 782, 945 |
| SacI | GAGCTC | 2 cut(s) | 408, 1003 |
| SapI | GCTCTTC | 1 cut(s) | 528 |
| SaqAI | TTAA | 3 cut(s) | 261, 800, 885 |
| SatI | GCNGC | 6 cut(s) | 63, 92, 95, 104, 212, 1020 |
| Sau3AI | GATC | 2 cut(s) | 248, 498 |
| Sau96I | GGNCC | 2 cut(s) | 908, 991 |
| ScaI | AGTACT | 1 cut(s) | 735 |
| ScrFI | CCNGG | 1 cut(s) | 1005 |
| SduI | GDGCHC | 3 cut(s) | 85, 408, 1003 |
| SfaNI | GCATC | 2 cut(s) | 115, 496 |
| SfoI | GGCGCC | 1 cut(s) | 1042 |
| SfuI | TTCGAA | 1 cut(s) | 365 |
| SinI | GGWCC | 1 cut(s) | 908 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 452, 782, 945 |
| SmlI | CTYRAG | 1 cut(s) | 1023 |
| SmoI | CTYRAG | 1 cut(s) | 1023 |
| Sse9I | AATT | 4 cut(s) | 699, 790, 796, 835 |
| SsiI | CCGC | 1 cut(s) | 209 |
| SspDI | GGCGCC | 1 cut(s) | 1040 |
| SspMI | CTAG | 4 cut(s) | 48, 123, 510, 530 |
| SstI | GAGCTC | 2 cut(s) | 408, 1003 |
| StyD4I | CCNGG | 1 cut(s) | 1003 |
| TaaI | ACNGT | 1 cut(s) | 332 |
| TaiI | ACGT | 4 cut(s) | 120, 964, 982, 1012 |
| TaqI | TCGA | 4 cut(s) | 189, 278, 291, 365 |
| TasI | AATT | 4 cut(s) | 699, 790, 796, 835 |
| TatI | WGTACW | 2 cut(s) | 489, 733 |
| TfiI | GAWTC | 4 cut(s) | 8, 308, 557, 600 |
| Tru1I | TTAA | 3 cut(s) | 261, 800, 885 |
| Tru9I | TTAA | 3 cut(s) | 261, 800, 885 |
| TscAI | CASTG | 3 cut(s) | 49, 445, 610 |
| TseFI | GTSAC | 2 cut(s) | 337, 682 |
| TseI | GCWGC | 6 cut(s) | 62, 91, 94, 103, 211, 1019 |
| Tsp45I | GTSAC | 2 cut(s) | 337, 682 |
| TspDTI | ATGAA | 1 cut(s) | 963 |
| TspGWI | ACGGA | 1 cut(s) | 970 |
| TspRI | CASTG | 3 cut(s) | 49, 445, 610 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1010 |
| VpaK11BI | GGWCC | 1 cut(s) | 908 |
| XceI | RCATGY | 1 cut(s) | 81 |
| XspI | CTAG | 4 cut(s) | 48, 123, 510, 530 |
| ZrmI | AGTACT | 1 cut(s) | 735 |