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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 546, 611 |
| AccII | CGCG | 2 cut(s) | 531, 738 |
| AccIII | TCCGGA | 1 cut(s) | 511 |
| AclWI | GGATC | 1 cut(s) | 483 |
| AcoI | YGGCCR | 1 cut(s) | 598 |
| AcsI | RAATTY | 1 cut(s) | 290 |
| AcyI | GRCGYC | 2 cut(s) | 547, 612 |
| AfaI | GTAC | 1 cut(s) | 110 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 542 |
| AgsI | TTSAA | 3 cut(s) | 20, 238, 649 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 150, 182 |
| AluBI | AGCT | 4 cut(s) | 23, 424, 434, 785 |
| AluI | AGCT | 4 cut(s) | 23, 424, 434, 785 |
| Alw21I | GWGCWC | 1 cut(s) | 426 |
| Alw26I | GTCTC | 2 cut(s) | 154, 358 |
| AlwI | GGATC | 1 cut(s) | 483 |
| Aor13HI | TCCGGA | 1 cut(s) | 511 |
| AoxI | GGCC | 1 cut(s) | 598 |
| ApeKI | GCWGC | 1 cut(s) | 41 |
| ApoI | RAATTY | 1 cut(s) | 290 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 732, 764 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 267, 507 |
| AspLEI | GCGC | 3 cut(s) | 533, 549, 614 |
| AsuC2I | CCSGG | 1 cut(s) | 350 |
| BaeGI | GKGCMC | 1 cut(s) | 721 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 100, 133 |
| BalI | TGGCCA | 1 cut(s) | 600 |
| BanI | GGYRCC | 2 cut(s) | 546, 611 |
| BanII | GRGCYC | 1 cut(s) | 426 |
| BbsI | GAAGAC | 2 cut(s) | 135, 338 |
| Bbv12I | GWGCWC | 1 cut(s) | 426 |
| BbvI | GCAGC | 1 cut(s) | 53 |
| BccI | CCATC | 3 cut(s) | 204, 358, 639 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 203, 237, 377, 411 |
| BclI | TGATCA | 1 cut(s) | 709 |
| BcnI | CCSGG | 1 cut(s) | 350 |
| BcoDI | GTCTC | 2 cut(s) | 154, 358 |
| BfaI | CTAG | 2 cut(s) | 200, 821 |
| BfoI | RGCGCY | 2 cut(s) | 550, 615 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 50 |
| BisI | GCNGC | 1 cut(s) | 42 |
| BlsI | GCNGC | 1 cut(s) | 43 |
| Bme1390I | CCNGG | 1 cut(s) | 350 |
| BmiI | GGNNCC | 2 cut(s) | 548, 613 |
| BmrFI | CCNGG | 1 cut(s) | 350 |
| BpiI | GAAGAC | 2 cut(s) | 135, 338 |
| BpmI | CTGGAG | 1 cut(s) | 89 |
| BpuMI | CCSGG | 1 cut(s) | 350 |
| Bsa29I | ATCGAT | 1 cut(s) | 387 |
| BsaHI | GRCGYC | 2 cut(s) | 547, 612 |
| BsaI | GGTCTC | 2 cut(s) | 154, 358 |
| BsaJI | CCNNGG | 1 cut(s) | 492 |
| BsaWI | WCCGGW | 1 cut(s) | 511 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 542 |
| Bse1I | ACTGG | 2 cut(s) | 106, 242 |
| BseAI | TCCGGA | 1 cut(s) | 511 |
| BseCI | ATCGAT | 1 cut(s) | 387 |
| BseDI | CCNNGG | 1 cut(s) | 492 |
| BseGI | GGATG | 3 cut(s) | 72, 100, 462 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 542 |
| BseMII | CTCAG | 1 cut(s) | 273 |
| BseNI | ACTGG | 2 cut(s) | 106, 242 |
| BseSI | GKGCMC | 1 cut(s) | 721 |
| BseXI | GCAGC | 1 cut(s) | 53 |
| Bsh1236I | CGCG | 2 cut(s) | 531, 738 |
| BshFI | GGCC | 1 cut(s) | 600 |
| BshNI | GGYRCC | 2 cut(s) | 546, 611 |
| BshVI | ATCGAT | 1 cut(s) | 387 |
| BsiHKAI | GWGCWC | 1 cut(s) | 426 |
| BsiSI | CCGG | 2 cut(s) | 350, 512 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 542 |
| BsmAI | GTCTC | 2 cut(s) | 154, 358 |
| BsnI | GGCC | 1 cut(s) | 600 |
| Bso31I | GGTCTC | 2 cut(s) | 154, 358 |
| Bsp1286I | GDGCHC | 2 cut(s) | 426, 721 |
| Bsp13I | TCCGGA | 1 cut(s) | 511 |
| Bsp143I | GATC | 5 cut(s) | 306, 488, 709, 805, 817 |
| Bsp68I | TCGCGA | 1 cut(s) | 738 |
| BspANI | GGCC | 1 cut(s) | 600 |
| BspCNI | CTCAG | 1 cut(s) | 272 |
| BspDI | ATCGAT | 1 cut(s) | 387 |
| BspEI | TCCGGA | 1 cut(s) | 511 |
| BspFNI | CGCG | 2 cut(s) | 531, 738 |
| BspHI | TCATGA | 1 cut(s) | 418 |
| BspLI | GGNNCC | 2 cut(s) | 548, 613 |
| BspPI | GGATC | 1 cut(s) | 483 |
| BspT107I | GGYRCC | 2 cut(s) | 546, 611 |
| BspTNI | GGTCTC | 2 cut(s) | 154, 358 |
| BsrI | ACTGG | 2 cut(s) | 106, 242 |
| BssECI | CCNNGG | 1 cut(s) | 492 |
| BssMI | GATC | 5 cut(s) | 306, 488, 709, 805, 817 |
| BssNI | GRCGYC | 2 cut(s) | 547, 612 |
| Bst4CI | ACNGT | 3 cut(s) | 7, 563, 644 |
| BstACI | GRCGYC | 2 cut(s) | 547, 612 |
| BstDEI | CTNAG | 4 cut(s) | 46, 259, 372, 624 |
| BstF5I | GGATG | 3 cut(s) | 72, 100, 462 |
| BstFNI | CGCG | 2 cut(s) | 531, 738 |
| BstH2I | RGCGCY | 2 cut(s) | 550, 615 |
| BstHHI | GCGC | 3 cut(s) | 533, 549, 614 |
| BstKTI | GATC | 5 cut(s) | 309, 491, 712, 808, 820 |
| BstMAI | GTCTC | 2 cut(s) | 154, 358 |
| BstMBI | GATC | 5 cut(s) | 306, 488, 709, 805, 817 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 29, 38, 50, 59, 553, 761, 782 |
| BstSCI | CCNGG | 1 cut(s) | 348 |
| BstSLI | GKGCMC | 1 cut(s) | 721 |
| BstUI | CGCG | 2 cut(s) | 531, 738 |
| BstV1I | GCAGC | 1 cut(s) | 53 |
| BstV2I | GAAGAC | 2 cut(s) | 135, 338 |
| BstX2I | RGATCY | 1 cut(s) | 488 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 608 |
| BstYI | RGATCY | 1 cut(s) | 488 |
| Bsu15I | ATCGAT | 1 cut(s) | 387 |
| BsuRI | GGCC | 1 cut(s) | 600 |
| BsuTUI | ATCGAT | 1 cut(s) | 387 |
| BtgZI | GCGATG | 1 cut(s) | 332 |
| BtsCI | GGATG | 3 cut(s) | 72, 100, 462 |
| BtsI | GCAGTG | 1 cut(s) | 750 |
| BtsIMutI | CAGTG | 1 cut(s) | 750 |
| BtuMI | TCGCGA | 1 cut(s) | 738 |
| CciI | TCATGA | 1 cut(s) | 418 |
| CfoI | GCGC | 3 cut(s) | 533, 549, 614 |
| ClaI | ATCGAT | 1 cut(s) | 387 |
| Csp6I | GTAC | 1 cut(s) | 109 |
| CviAII | CATG | 2 cut(s) | 419, 602 |
| CviQI | GTAC | 1 cut(s) | 109 |
| DdeI | CTNAG | 4 cut(s) | 46, 259, 372, 624 |
| DinI | GGCGCC | 2 cut(s) | 548, 613 |
| DpnI | GATC | 5 cut(s) | 308, 490, 711, 807, 819 |
| DpnII | GATC | 5 cut(s) | 306, 488, 709, 805, 817 |
| EaeI | YGGCCR | 1 cut(s) | 598 |
| Ecl136II | GAGCTC | 1 cut(s) | 424 |
| Eco24I | GRGCYC | 1 cut(s) | 426 |
| Eco31I | GGTCTC | 2 cut(s) | 154, 358 |
| Eco53kI | GAGCTC | 1 cut(s) | 424 |
| EcoICRI | GAGCTC | 1 cut(s) | 424 |
| EcoRI | GAATTC | 1 cut(s) | 290 |
| EcoT38I | GRGCYC | 1 cut(s) | 426 |
| EgeI | GGCGCC | 2 cut(s) | 548, 613 |
| EheI | GGCGCC | 2 cut(s) | 548, 613 |
| FaeI | CATG | 2 cut(s) | 422, 605 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 769, 801 |
| FatI | CATG | 2 cut(s) | 418, 601 |
| FauNDI | CATATG | 1 cut(s) | 90 |
| FbaI | TGATCA | 1 cut(s) | 709 |
| Fnu4HI | GCNGC | 1 cut(s) | 42 |
| FokI | GGATG | 3 cut(s) | 59, 107, 449 |
| FriOI | GRGCYC | 1 cut(s) | 426 |
| Fsp4HI | GCNGC | 1 cut(s) | 42 |
| FspBI | CTAG | 2 cut(s) | 200, 821 |
| GlaI | GCGC | 3 cut(s) | 532, 548, 613 |
| GluI | GCNGC | 1 cut(s) | 42 |
| GsuI | CTGGAG | 1 cut(s) | 89 |
| HaeII | RGCGCY | 2 cut(s) | 550, 615 |
| HaeIII | GGCC | 1 cut(s) | 600 |
| HapII | CCGG | 2 cut(s) | 350, 512 |
| HhaI | GCGC | 3 cut(s) | 533, 549, 614 |
| Hin1I | GRCGYC | 2 cut(s) | 547, 612 |
| Hin1II | CATG | 2 cut(s) | 422, 605 |
| Hin6I | GCGC | 3 cut(s) | 531, 547, 612 |
| HinP1I | GCGC | 3 cut(s) | 531, 547, 612 |
| HindIII | AAGCTT | 2 cut(s) | 21, 783 |
| HinfI | GANTC | 7 cut(s) | 82, 98, 182, 334, 384, 405, 515 |
| HpaII | CCGG | 2 cut(s) | 350, 512 |
| Hpy166II | GTNNAC | 1 cut(s) | 566 |
| Hpy188I | TCNGA | 3 cut(s) | 262, 493, 709 |
| Hpy188III | TCNNGA | 9 cut(s) | 194, 248, 419, 486, 512, 693, 737, 809, 821 |
| Hpy8I | GTNNAC | 1 cut(s) | 566 |
| HpyAV | CCTTC | 2 cut(s) | 132, 230 |
| HpyCH4III | ACNGT | 3 cut(s) | 7, 563, 644 |
| HpyCH4IV | ACGT | 2 cut(s) | 174, 568 |
| HpyCH4V | TGCA | 2 cut(s) | 359, 398 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 29, 38, 50, 59, 553, 761, 782 |
| HpyF3I | CTNAG | 4 cut(s) | 46, 259, 372, 624 |
| HpySE526I | ACGT | 2 cut(s) | 174, 568 |
| Hsp92I | GRCGYC | 2 cut(s) | 547, 612 |
| Hsp92II | CATG | 2 cut(s) | 422, 605 |
| HspAI | GCGC | 3 cut(s) | 531, 547, 612 |
| KasI | GGCGCC | 2 cut(s) | 546, 611 |
| Kpn2I | TCCGGA | 1 cut(s) | 511 |
| Ksp22I | TGATCA | 1 cut(s) | 709 |
| Kzo9I | GATC | 5 cut(s) | 306, 488, 709, 805, 817 |
| LmnI | GCTCC | 3 cut(s) | 108, 431, 673 |
| LpnPI | CCDG | 8 cut(s) | 119, 148, 200, 207, 255, 363, 525, 582 |
| Lsp1109I | GCAGC | 1 cut(s) | 53 |
| MaeI | CTAG | 2 cut(s) | 200, 821 |
| MaeII | ACGT | 2 cut(s) | 174, 568 |
| MaeIII | GTNAC | 3 cut(s) | 179, 391, 748 |
| MalI | GATC | 5 cut(s) | 308, 490, 711, 807, 819 |
| MboI | GATC | 5 cut(s) | 306, 488, 709, 805, 817 |
| MboII | GAAGA | 9 cut(s) | 137, 140, 170, 343, 414, 484, 752, 815, 824 |
| MflI | RGATCY | 1 cut(s) | 488 |
| MhlI | GDGCHC | 2 cut(s) | 426, 721 |
| MlsI | TGGCCA | 1 cut(s) | 600 |
| MluCI | AATT | 4 cut(s) | 290, 481, 520, 744 |
| MluNI | TGGCCA | 1 cut(s) | 600 |
| Mly113I | GGCGCC | 2 cut(s) | 547, 612 |
| MlyI | GAGTC | 3 cut(s) | 76, 176, 328 |
| MmeI | TCCRAC | 1 cut(s) | 651 |
| MnlI | CCTC | 8 cut(s) | 43, 201, 487, 536, 574, 578, 604, 666 |
| Mox20I | TGGCCA | 1 cut(s) | 600 |
| MroI | TCCGGA | 1 cut(s) | 511 |
| MroXI | GAANNNNTTC | 2 cut(s) | 267, 507 |
| MscI | TGGCCA | 1 cut(s) | 600 |
| MseI | TTAA | 2 cut(s) | 276, 284 |
| MslI | CAYNNNNRTG | 5 cut(s) | 77, 93, 467, 606, 636 |
| Msp20I | TGGCCA | 1 cut(s) | 600 |
| MspI | CCGG | 2 cut(s) | 350, 512 |
| MspR9I | CCNGG | 1 cut(s) | 350 |
| MvnI | CGCG | 2 cut(s) | 531, 738 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 29, 38, 50, 59, 553, 761, 782 |
| NarI | GGCGCC | 2 cut(s) | 547, 612 |
| NciI | CCSGG | 1 cut(s) | 350 |
| NdeI | CATATG | 1 cut(s) | 90 |
| NdeII | GATC | 5 cut(s) | 306, 488, 709, 805, 817 |
| NlaIII | CATG | 2 cut(s) | 422, 605 |
| NlaIV | GGNNCC | 2 cut(s) | 548, 613 |
| NmuCI | GTSAC | 2 cut(s) | 179, 748 |
| NruI | TCGCGA | 1 cut(s) | 738 |
| PagI | TCATGA | 1 cut(s) | 418 |
| PdmI | GAANNNNTTC | 2 cut(s) | 267, 507 |
| PfeI | GAWTC | 4 cut(s) | 98, 384, 405, 515 |
| PkrI | GCNGC | 1 cut(s) | 43 |
| PleI | GAGTC | 3 cut(s) | 76, 176, 328 |
| PluTI | GGCGCC | 2 cut(s) | 550, 615 |
| PpsI | GAGTC | 3 cut(s) | 76, 176, 328 |
| Psp124BI | GAGCTC | 1 cut(s) | 426 |
| PspN4I | GGNNCC | 2 cut(s) | 548, 613 |
| PsuI | RGATCY | 1 cut(s) | 488 |
| RruI | TCGCGA | 1 cut(s) | 738 |
| RsaI | GTAC | 1 cut(s) | 110 |
| RsaNI | GTAC | 1 cut(s) | 109 |
| RseI | CAYNNNNRTG | 5 cut(s) | 77, 93, 467, 606, 636 |
| SacI | GAGCTC | 1 cut(s) | 426 |
| SaqAI | TTAA | 2 cut(s) | 276, 284 |
| SatI | GCNGC | 1 cut(s) | 42 |
| Sau3AI | GATC | 5 cut(s) | 306, 488, 709, 805, 817 |
| SchI | GAGTC | 3 cut(s) | 76, 176, 328 |
| ScrFI | CCNGG | 1 cut(s) | 350 |
| SduI | GDGCHC | 2 cut(s) | 426, 721 |
| SetI | ASST | 8 cut(s) | 25, 177, 201, 416, 426, 436, 571, 787 |
| SfoI | GGCGCC | 2 cut(s) | 548, 613 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 77, 93, 467, 606, 636 |
| Sse9I | AATT | 4 cut(s) | 290, 481, 520, 744 |
| SspDI | GGCGCC | 2 cut(s) | 546, 611 |
| SspMI | CTAG | 2 cut(s) | 200, 821 |
| SstI | GAGCTC | 1 cut(s) | 426 |
| StyD4I | CCNGG | 1 cut(s) | 348 |
| TaaI | ACNGT | 3 cut(s) | 7, 563, 644 |
| TaiI | ACGT | 2 cut(s) | 177, 571 |
| TaqI | TCGA | 5 cut(s) | 156, 382, 387, 485, 694 |
| TasI | AATT | 4 cut(s) | 290, 481, 520, 744 |
| TfiI | GAWTC | 4 cut(s) | 98, 384, 405, 515 |
| Tru1I | TTAA | 2 cut(s) | 276, 284 |
| Tru9I | TTAA | 2 cut(s) | 276, 284 |
| TscAI | CASTG | 1 cut(s) | 757 |
| TseFI | GTSAC | 2 cut(s) | 179, 748 |
| TseI | GCWGC | 1 cut(s) | 41 |
| Tsp45I | GTSAC | 2 cut(s) | 179, 748 |
| TspDTI | ATGAA | 3 cut(s) | 138, 407, 452 |
| TspGWI | ACGGA | 1 cut(s) | 167 |
| TspRI | CASTG | 1 cut(s) | 757 |
| XapI | RAATTY | 1 cut(s) | 290 |
| XbaI | TCTAGA | 1 cut(s) | 820 |
| XmnI | GAANNNNTTC | 2 cut(s) | 267, 507 |
| XspI | CTAG | 2 cut(s) | 200, 821 |