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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 353 |
| AccII | CGCG | 1 cut(s) | 23 |
| AciI | CCGC | 5 cut(s) | 145, 626, 768, 803, 806 |
| AclI | AACGTT | 1 cut(s) | 96 |
| AclWI | GGATC | 3 cut(s) | 792, 827, 843 |
| AcsI | RAATTY | 2 cut(s) | 212, 597 |
| AcyI | GRCGYC | 2 cut(s) | 510, 644 |
| AfaI | GTAC | 2 cut(s) | 38, 168 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 464, 625, 731, 808, 809, 875 |
| AgsI | TTSAA | 1 cut(s) | 160 |
| AjnI | CCWGG | 2 cut(s) | 736, 868 |
| AluBI | AGCT | 2 cut(s) | 346, 540 |
| AluI | AGCT | 2 cut(s) | 346, 540 |
| Alw26I | GTCTC | 3 cut(s) | 280, 403, 496 |
| AlwI | GGATC | 3 cut(s) | 792, 827, 843 |
| AoxI | GGCC | 6 cut(s) | 484, 616, 663, 697, 734, 866 |
| ApaI | GGGCCC | 1 cut(s) | 667 |
| ApeKI | GCWGC | 1 cut(s) | 82 |
| ApoI | RAATTY | 2 cut(s) | 212, 597 |
| AseI | ATTAAT | 1 cut(s) | 309 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 257 |
| AspLEI | GCGC | 3 cut(s) | 25, 471, 553 |
| AspS9I | GGNCC | 6 cut(s) | 617, 663, 664, 698, 734, 786 |
| AsuHPI | GGTGA | 2 cut(s) | 518, 782 |
| AvaII | GGWCC | 1 cut(s) | 786 |
| AxyI | CCTNAGG | 1 cut(s) | 459 |
| BaeGI | GKGCMC | 2 cut(s) | 457, 667 |
| BanI | GGYRCC | 1 cut(s) | 353 |
| BanII | GRGCYC | 1 cut(s) | 667 |
| BbsI | GAAGAC | 2 cut(s) | 260, 662 |
| BbvI | GCAGC | 1 cut(s) | 94 |
| BccI | CCATC | 7 cut(s) | 126, 202, 280, 749, 767, 840, 874 |
| BceAI | ACGGC | 1 cut(s) | 639 |
| BciT130I | CCWGG | 2 cut(s) | 738, 870 |
| BcoDI | GTCTC | 3 cut(s) | 280, 403, 496 |
| BfaI | CTAG | 3 cut(s) | 77, 636, 726 |
| BfmI | CTRYAG | 1 cut(s) | 499 |
| BfoI | RGCGCY | 1 cut(s) | 554 |
| BisI | GCNGC | 2 cut(s) | 83, 806 |
| BlsI | GCNGC | 2 cut(s) | 84, 807 |
| Bme1390I | CCNGG | 2 cut(s) | 738, 870 |
| Bme18I | GGWCC | 1 cut(s) | 786 |
| BmgT120I | GGNCC | 6 cut(s) | 617, 663, 664, 698, 734, 786 |
| BmiI | GGNNCC | 5 cut(s) | 355, 421, 567, 664, 665 |
| BmrFI | CCNGG | 2 cut(s) | 738, 870 |
| BmsI | GCATC | 4 cut(s) | 314, 336, 571, 886 |
| BpiI | GAAGAC | 2 cut(s) | 260, 662 |
| Bsa29I | ATCGAT | 1 cut(s) | 844 |
| BsaBI | GATNNNNATC | 2 cut(s) | 245, 840 |
| BsaHI | GRCGYC | 2 cut(s) | 510, 644 |
| BsaI | GGTCTC | 1 cut(s) | 403 |
| BsaJI | CCNNGG | 4 cut(s) | 414, 674, 701, 831 |
| BsaWI | WCCGGW | 1 cut(s) | 788 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 464, 625, 731, 808, 809, 875 |
| Bse1I | ACTGG | 1 cut(s) | 900 |
| Bse21I | CCTNAGG | 1 cut(s) | 459 |
| Bse8I | GATNNNNATC | 2 cut(s) | 245, 840 |
| BseBI | CCWGG | 2 cut(s) | 738, 870 |
| BseCI | ATCGAT | 1 cut(s) | 844 |
| BseDI | CCNNGG | 4 cut(s) | 414, 674, 701, 831 |
| BseGI | GGATG | 6 cut(s) | 329, 586, 655, 760, 857, 885 |
| BseJI | GATNNNNATC | 2 cut(s) | 245, 840 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 464, 625, 731, 808, 809, 875 |
| BseNI | ACTGG | 1 cut(s) | 900 |
| BseRI | GAGGAG | 1 cut(s) | 491 |
| BseSI | GKGCMC | 2 cut(s) | 457, 667 |
| BseXI | GCAGC | 1 cut(s) | 94 |
| BseYI | CCCAGC | 1 cut(s) | 808 |
| Bsh1236I | CGCG | 1 cut(s) | 23 |
| Bsh1285I | CGRYCG | 1 cut(s) | 844 |
| BshFI | GGCC | 6 cut(s) | 486, 618, 665, 699, 736, 868 |
| BshNI | GGYRCC | 1 cut(s) | 353 |
| BshVI | ATCGAT | 1 cut(s) | 844 |
| BsiEI | CGRYCG | 1 cut(s) | 844 |
| BsiSI | CCGG | 2 cut(s) | 647, 789 |
| BslFI | GGGAC | 3 cut(s) | 516, 589, 935 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 464, 625, 731, 808, 809, 875 |
| BsmAI | GTCTC | 3 cut(s) | 280, 403, 496 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsmFI | GGGAC | 3 cut(s) | 516, 589, 935 |
| BsnI | GGCC | 6 cut(s) | 486, 618, 665, 699, 736, 868 |
| Bso31I | GGTCTC | 1 cut(s) | 403 |
| Bsp120I | GGGCCC | 1 cut(s) | 663 |
| Bsp1286I | GDGCHC | 2 cut(s) | 457, 667 |
| Bsp143I | GATC | 7 cut(s) | 246, 557, 797, 819, 835, 841, 931 |
| Bsp19I | CCATGG | 1 cut(s) | 831 |
| BspACI | CCGC | 5 cut(s) | 145, 626, 768, 803, 806 |
| BspANI | GGCC | 6 cut(s) | 486, 618, 665, 699, 736, 868 |
| BspDI | ATCGAT | 1 cut(s) | 844 |
| BspFNI | CGCG | 1 cut(s) | 23 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 5 cut(s) | 355, 421, 567, 664, 665 |
| BspPI | GGATC | 3 cut(s) | 792, 827, 843 |
| BspT107I | GGYRCC | 1 cut(s) | 353 |
| BspTNI | GGTCTC | 1 cut(s) | 403 |
| BsrI | ACTGG | 1 cut(s) | 900 |
| BssECI | CCNNGG | 4 cut(s) | 414, 674, 701, 831 |
| BssMI | GATC | 7 cut(s) | 246, 557, 797, 819, 835, 841, 931 |
| BssNI | GRCGYC | 2 cut(s) | 510, 644 |
| BssT1I | CCWWGG | 3 cut(s) | 674, 701, 831 |
| Bst2UI | CCWGG | 2 cut(s) | 738, 870 |
| Bst4CI | ACNGT | 2 cut(s) | 786, 827 |
| BstACI | GRCGYC | 2 cut(s) | 510, 644 |
| BstC8I | GCNNGC | 1 cut(s) | 633 |
| BstDEI | CTNAG | 3 cut(s) | 121, 459, 590 |
| BstDSI | CCRYGG | 2 cut(s) | 414, 831 |
| BstEII | GGTNACC | 1 cut(s) | 289 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 462, 873 |
| BstF5I | GGATG | 6 cut(s) | 329, 586, 655, 760, 857, 885 |
| BstFNI | CGCG | 1 cut(s) | 23 |
| BstH2I | RGCGCY | 1 cut(s) | 554 |
| BstHHI | GCGC | 3 cut(s) | 25, 471, 553 |
| BstKTI | GATC | 7 cut(s) | 249, 560, 800, 822, 838, 844, 934 |
| BstMAI | GTCTC | 3 cut(s) | 280, 403, 496 |
| BstMBI | GATC | 7 cut(s) | 246, 557, 797, 819, 835, 841, 931 |
| BstMCI | CGRYCG | 1 cut(s) | 844 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 632, 652 |
| BstNI | CCWGG | 2 cut(s) | 738, 870 |
| BstPI | GGTNACC | 1 cut(s) | 289 |
| BstSCI | CCNGG | 2 cut(s) | 736, 868 |
| BstSFI | CTRYAG | 1 cut(s) | 499 |
| BstSLI | GKGCMC | 2 cut(s) | 457, 667 |
| BstUI | CGCG | 1 cut(s) | 23 |
| BstV1I | GCAGC | 1 cut(s) | 94 |
| BstV2I | GAAGAC | 2 cut(s) | 260, 662 |
| BstX2I | RGATCY | 1 cut(s) | 835 |
| BstYI | RGATCY | 1 cut(s) | 835 |
| Bsu15I | ATCGAT | 1 cut(s) | 844 |
| Bsu36I | CCTNAGG | 1 cut(s) | 459 |
| BsuRI | GGCC | 6 cut(s) | 486, 618, 665, 699, 736, 868 |
| BsuTUI | ATCGAT | 1 cut(s) | 844 |
| BtgI | CCRYGG | 2 cut(s) | 414, 831 |
| BtsCI | GGATG | 6 cut(s) | 329, 586, 655, 760, 857, 885 |
| BtsIMutI | CAGTG | 4 cut(s) | 231, 725, 832, 934 |
| Cac8I | GCNNGC | 1 cut(s) | 633 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 3 cut(s) | 25, 471, 553 |
| Cfr13I | GGNCC | 6 cut(s) | 617, 663, 664, 698, 734, 786 |
| ClaI | ATCGAT | 1 cut(s) | 844 |
| CpoI | CGGWCCG | 1 cut(s) | 786 |
| CseI | GACGC | 3 cut(s) | 29, 518, 652 |
| Csp6I | GTAC | 2 cut(s) | 37, 167 |
| CspI | CGGWCCG | 1 cut(s) | 786 |
| CviAII | CATG | 5 cut(s) | 13, 341, 358, 377, 832 |
| CviQI | GTAC | 2 cut(s) | 37, 167 |
| DdeI | CTNAG | 3 cut(s) | 121, 459, 590 |
| DpnI | GATC | 7 cut(s) | 248, 559, 799, 821, 837, 843, 933 |
| DpnII | GATC | 7 cut(s) | 246, 557, 797, 819, 835, 841, 931 |
| Eco130I | CCWWGG | 3 cut(s) | 674, 701, 831 |
| Eco147I | AGGCCT | 1 cut(s) | 868 |
| Eco24I | GRGCYC | 1 cut(s) | 667 |
| Eco31I | GGTCTC | 1 cut(s) | 403 |
| Eco47I | GGWCC | 1 cut(s) | 786 |
| Eco81I | CCTNAGG | 1 cut(s) | 459 |
| Eco91I | GGTNACC | 1 cut(s) | 289 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 462, 873 |
| EcoO109I | RGGNCCY | 1 cut(s) | 663 |
| EcoO65I | GGTNACC | 1 cut(s) | 289 |
| EcoRI | GAATTC | 1 cut(s) | 212 |
| EcoRII | CCWGG | 2 cut(s) | 736, 868 |
| EcoT14I | CCWWGG | 3 cut(s) | 674, 701, 831 |
| EcoT22I | ATGCAT | 1 cut(s) | 329 |
| EcoT38I | GRGCYC | 1 cut(s) | 667 |
| ErhI | CCWWGG | 3 cut(s) | 674, 701, 831 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 5 cut(s) | 16, 344, 361, 380, 835 |
| FaqI | GGGAC | 3 cut(s) | 516, 589, 935 |
| FatI | CATG | 5 cut(s) | 12, 340, 357, 376, 831 |
| FauI | CCCGC | 1 cut(s) | 810 |
| Fnu4HI | GCNGC | 2 cut(s) | 83, 806 |
| FokI | GGATG | 6 cut(s) | 336, 593, 662, 767, 864, 892 |
| FriOI | GRGCYC | 1 cut(s) | 667 |
| Fsp4HI | GCNGC | 2 cut(s) | 83, 806 |
| FspBI | CTAG | 3 cut(s) | 77, 636, 726 |
| GlaI | GCGC | 3 cut(s) | 24, 470, 552 |
| GluI | GCNGC | 2 cut(s) | 83, 806 |
| GsaI | CCCAGC | 1 cut(s) | 812 |
| HaeII | RGCGCY | 1 cut(s) | 554 |
| HaeIII | GGCC | 6 cut(s) | 486, 618, 665, 699, 736, 868 |
| HapII | CCGG | 2 cut(s) | 647, 789 |
| HgaI | GACGC | 3 cut(s) | 29, 518, 652 |
| HhaI | GCGC | 3 cut(s) | 25, 471, 553 |
| Hin1I | GRCGYC | 2 cut(s) | 510, 644 |
| Hin1II | CATG | 5 cut(s) | 16, 344, 361, 380, 835 |
| Hin6I | GCGC | 3 cut(s) | 23, 469, 551 |
| HinP1I | GCGC | 3 cut(s) | 23, 469, 551 |
| HinfI | GANTC | 3 cut(s) | 104, 437, 706 |
| HpaII | CCGG | 2 cut(s) | 647, 789 |
| HphI | GGTGA | 2 cut(s) | 518, 782 |
| Hpy188I | TCNGA | 4 cut(s) | 184, 306, 436, 496 |
| Hpy188III | TCNNGA | 6 cut(s) | 116, 250, 341, 408, 743, 839 |
| Hpy99I | CGWCG | 2 cut(s) | 646, 911 |
| HpyAV | CCTTC | 2 cut(s) | 653, 758 |
| HpyCH4III | ACNGT | 2 cut(s) | 786, 827 |
| HpyCH4IV | ACGT | 1 cut(s) | 96 |
| HpyCH4V | TGCA | 3 cut(s) | 281, 320, 327 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 632, 652 |
| HpyF3I | CTNAG | 3 cut(s) | 121, 459, 590 |
| HpySE526I | ACGT | 1 cut(s) | 96 |
| Hsp92I | GRCGYC | 2 cut(s) | 510, 644 |
| Hsp92II | CATG | 5 cut(s) | 16, 344, 361, 380, 835 |
| HspAI | GCGC | 3 cut(s) | 23, 469, 551 |
| Kzo9I | GATC | 7 cut(s) | 246, 557, 797, 819, 835, 841, 931 |
| LmnI | GCTCC | 2 cut(s) | 30, 419 |
| Lsp1109I | GCAGC | 1 cut(s) | 94 |
| LweI | GCATC | 4 cut(s) | 314, 336, 571, 886 |
| MaeI | CTAG | 3 cut(s) | 77, 636, 726 |
| MaeII | ACGT | 1 cut(s) | 96 |
| MaeIII | GTNAC | 3 cut(s) | 101, 289, 506 |
| MalI | GATC | 7 cut(s) | 248, 559, 799, 821, 837, 843, 933 |
| MboI | GATC | 7 cut(s) | 246, 557, 797, 819, 835, 841, 931 |
| MboII | GAAGA | 3 cut(s) | 265, 406, 662 |
| MflI | RGATCY | 1 cut(s) | 835 |
| MhlI | GDGCHC | 2 cut(s) | 457, 667 |
| MluCI | AATT | 6 cut(s) | 178, 212, 403, 429, 442, 597 |
| MlyI | GAGTC | 2 cut(s) | 98, 446 |
| MmeI | TCCRAC | 1 cut(s) | 519 |
| MnlI | CCTC | 8 cut(s) | 50, 152, 458, 469, 476, 564, 850, 858 |
| Mph1103I | ATGCAT | 1 cut(s) | 329 |
| MroXI | GAANNNNTTC | 1 cut(s) | 257 |
| MseI | TTAA | 2 cut(s) | 309, 365 |
| MslI | CAYNNNNRTG | 3 cut(s) | 15, 389, 579 |
| MspA1I | CMGCKG | 1 cut(s) | 808 |
| MspI | CCGG | 2 cut(s) | 647, 789 |
| MspR9I | CCNGG | 2 cut(s) | 738, 870 |
| MvaI | CCWGG | 2 cut(s) | 738, 870 |
| MvnI | CGCG | 1 cut(s) | 23 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 632, 652 |
| NcoI | CCATGG | 1 cut(s) | 831 |
| NdeII | GATC | 7 cut(s) | 246, 557, 797, 819, 835, 841, 931 |
| NlaIII | CATG | 5 cut(s) | 16, 344, 361, 380, 835 |
| NlaIV | GGNNCC | 5 cut(s) | 355, 421, 567, 664, 665 |
| NmuCI | GTSAC | 2 cut(s) | 101, 506 |
| NsiI | ATGCAT | 1 cut(s) | 329 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PceI | AGGCCT | 1 cut(s) | 868 |
| PdmI | GAANNNNTTC | 1 cut(s) | 257 |
| PfeI | GAWTC | 1 cut(s) | 706 |
| PkrI | GCNGC | 2 cut(s) | 84, 807 |
| Ple19I | CGATCG | 1 cut(s) | 844 |
| PleI | GAGTC | 2 cut(s) | 98, 445 |
| PpsI | GAGTC | 2 cut(s) | 98, 445 |
| PshBI | ATTAAT | 1 cut(s) | 309 |
| Psp1406I | AACGTT | 1 cut(s) | 96 |
| Psp6I | CCWGG | 2 cut(s) | 736, 868 |
| PspEI | GGTNACC | 1 cut(s) | 289 |
| PspFI | CCCAGC | 1 cut(s) | 808 |
| PspGI | CCWGG | 2 cut(s) | 736, 868 |
| PspN4I | GGNNCC | 5 cut(s) | 355, 421, 567, 664, 665 |
| PspOMI | GGGCCC | 1 cut(s) | 663 |
| PspPI | GGNCC | 6 cut(s) | 617, 663, 664, 698, 734, 786 |
| PsuI | RGATCY | 1 cut(s) | 835 |
| PvuI | CGATCG | 1 cut(s) | 844 |
| RsaI | GTAC | 2 cut(s) | 38, 168 |
| RsaNI | GTAC | 2 cut(s) | 37, 167 |
| RseI | CAYNNNNRTG | 3 cut(s) | 15, 389, 579 |
| Rsr2I | CGGWCCG | 1 cut(s) | 786 |
| RsrII | CGGWCCG | 1 cut(s) | 786 |
| SaqAI | TTAA | 2 cut(s) | 309, 365 |
| SatI | GCNGC | 2 cut(s) | 83, 806 |
| Sau3AI | GATC | 7 cut(s) | 246, 557, 797, 819, 835, 841, 931 |
| Sau96I | GGNCC | 6 cut(s) | 617, 663, 664, 698, 734, 786 |
| SchI | GAGTC | 2 cut(s) | 98, 446 |
| ScrFI | CCNGG | 2 cut(s) | 738, 870 |
| SduI | GDGCHC | 2 cut(s) | 457, 667 |
| SetI | ASST | 8 cut(s) | 42, 99, 269, 348, 542, 571, 750, 861 |
| SfaNI | GCATC | 4 cut(s) | 314, 336, 571, 886 |
| SfcI | CTRYAG | 1 cut(s) | 499 |
| SinI | GGWCC | 1 cut(s) | 786 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 15, 389, 579 |
| Sse9I | AATT | 6 cut(s) | 178, 212, 403, 429, 442, 597 |
| SseBI | AGGCCT | 1 cut(s) | 868 |
| SsiI | CCGC | 5 cut(s) | 145, 626, 768, 803, 806 |
| SspMI | CTAG | 3 cut(s) | 77, 636, 726 |
| StuI | AGGCCT | 1 cut(s) | 868 |
| StyD4I | CCNGG | 2 cut(s) | 736, 868 |
| StyI | CCWWGG | 3 cut(s) | 674, 701, 831 |
| TaaI | ACNGT | 2 cut(s) | 786, 827 |
| TaiI | ACGT | 1 cut(s) | 99 |
| TaqI | TCGA | 7 cut(s) | 249, 407, 556, 796, 822, 840, 844 |
| TasI | AATT | 6 cut(s) | 178, 212, 403, 429, 442, 597 |
| TatI | WGTACW | 1 cut(s) | 166 |
| TauI | GCSGC | 1 cut(s) | 808 |
| TfiI | GAWTC | 1 cut(s) | 706 |
| Tru1I | TTAA | 2 cut(s) | 309, 365 |
| Tru9I | TTAA | 2 cut(s) | 309, 365 |
| TscAI | CASTG | 3 cut(s) | 238, 725, 832 |
| TseFI | GTSAC | 2 cut(s) | 101, 506 |
| TseI | GCWGC | 1 cut(s) | 82 |
| Tsp45I | GTSAC | 2 cut(s) | 101, 506 |
| TspDTI | ATGAA | 4 cut(s) | 17, 29, 329, 374 |
| TspGWI | ACGGA | 2 cut(s) | 767, 924 |
| TspRI | CASTG | 3 cut(s) | 238, 725, 832 |
| VpaK11BI | GGWCC | 1 cut(s) | 786 |
| VspI | ATTAAT | 1 cut(s) | 309 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 462, 873 |
| XapI | RAATTY | 2 cut(s) | 212, 597 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 63 |
| XmnI | GAANNNNTTC | 1 cut(s) | 257 |
| XspI | CTAG | 3 cut(s) | 77, 636, 726 |
| Zsp2I | ATGCAT | 1 cut(s) | 329 |