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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 501 |
| AccII | CGCG | 2 cut(s) | 11, 441 |
| AciI | CCGC | 1 cut(s) | 133 |
| AcsI | RAATTY | 1 cut(s) | 200 |
| AcuI | CTGAAG | 1 cut(s) | 192 |
| AfaI | GTAC | 3 cut(s) | 26, 156, 667 |
| AfeI | AGCGCT | 1 cut(s) | 567 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 34, 523, 587, 588 |
| AgsI | TTSAA | 1 cut(s) | 148 |
| AjnI | CCWGG | 1 cut(s) | 630 |
| AluBI | AGCT | 2 cut(s) | 334, 356 |
| AluI | AGCT | 2 cut(s) | 334, 356 |
| Alw26I | GTCTC | 1 cut(s) | 619 |
| Ama87I | CYCGRG | 1 cut(s) | 65 |
| Aor51HI | AGCGCT | 1 cut(s) | 567 |
| ApeKI | GCWGC | 1 cut(s) | 70 |
| ApoI | RAATTY | 1 cut(s) | 200 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 410, 442 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 177 |
| AspLEI | GCGC | 4 cut(s) | 13, 443, 568, 579 |
| AspS9I | GGNCC | 1 cut(s) | 503 |
| AvaI | CYCGRG | 1 cut(s) | 65 |
| AvaII | GGWCC | 1 cut(s) | 503 |
| BbsI | GAAGAC | 2 cut(s) | 45, 248 |
| BbvI | GCAGC | 1 cut(s) | 82 |
| BccI | CCATC | 4 cut(s) | 114, 190, 297, 730 |
| BciT130I | CCWGG | 1 cut(s) | 632 |
| BcoDI | GTCTC | 1 cut(s) | 619 |
| BfaI | CTAG | 4 cut(s) | 309, 396, 480, 492 |
| BfoI | RGCGCY | 2 cut(s) | 569, 580 |
| BisI | GCNGC | 1 cut(s) | 71 |
| BlsI | GCNGC | 1 cut(s) | 72 |
| Bme1390I | CCNGG | 1 cut(s) | 632 |
| Bme18I | GGWCC | 1 cut(s) | 503 |
| BmeT110I | CYCGRG | 1 cut(s) | 65 |
| BmgT120I | GGNCC | 1 cut(s) | 503 |
| BmiI | GGNNCC | 2 cut(s) | 557, 593 |
| BmrFI | CCNGG | 1 cut(s) | 632 |
| BmrI | ACTGGG | 1 cut(s) | 657 |
| BmsI | GCATC | 3 cut(s) | 324, 597, 667 |
| BmuI | ACTGGG | 1 cut(s) | 657 |
| BpiI | GAAGAC | 2 cut(s) | 45, 248 |
| BsaBI | GATNNNNATC | 4 cut(s) | 233, 299, 740, 746 |
| BsaJI | CCNNGG | 2 cut(s) | 447, 559 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 34, 523, 587, 588 |
| Bse1I | ACTGG | 2 cut(s) | 401, 663 |
| Bse8I | GATNNNNATC | 4 cut(s) | 233, 299, 740, 746 |
| BseBI | CCWGG | 1 cut(s) | 632 |
| BseDI | CCNNGG | 2 cut(s) | 447, 559 |
| BseGI | GGATG | 2 cut(s) | 84, 658 |
| BseJI | GATNNNNATC | 4 cut(s) | 233, 299, 740, 746 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 34, 523, 587, 588 |
| BseMII | CTCAG | 1 cut(s) | 630 |
| BseNI | ACTGG | 2 cut(s) | 401, 663 |
| BseXI | GCAGC | 1 cut(s) | 82 |
| Bsh1236I | CGCG | 2 cut(s) | 11, 441 |
| BsiHKCI | CYCGRG | 1 cut(s) | 65 |
| BsiSI | CCGG | 1 cut(s) | 422 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 34, 523, 587, 588 |
| BsmAI | GTCTC | 1 cut(s) | 619 |
| BsoBI | CYCGRG | 1 cut(s) | 65 |
| Bsp143I | GATC | 4 cut(s) | 234, 583, 741, 747 |
| BspACI | CCGC | 1 cut(s) | 133 |
| BspCNI | CTCAG | 1 cut(s) | 629 |
| BspFNI | CGCG | 2 cut(s) | 11, 441 |
| BspHI | TCATGA | 2 cut(s) | 328, 693 |
| BspLI | GGNNCC | 2 cut(s) | 557, 593 |
| BsrI | ACTGG | 2 cut(s) | 401, 663 |
| BssECI | CCNNGG | 2 cut(s) | 447, 559 |
| BssMI | GATC | 4 cut(s) | 234, 583, 741, 747 |
| BssT1I | CCWWGG | 1 cut(s) | 447 |
| Bst2UI | CCWGG | 1 cut(s) | 632 |
| Bst4CI | ACNGT | 1 cut(s) | 560 |
| BstC8I | GCNNGC | 1 cut(s) | 549 |
| BstDEI | CTNAG | 4 cut(s) | 109, 411, 474, 616 |
| BstDSI | CCRYGG | 1 cut(s) | 559 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 32 |
| BstF5I | GGATG | 2 cut(s) | 84, 658 |
| BstFNI | CGCG | 2 cut(s) | 11, 441 |
| BstH2I | RGCGCY | 2 cut(s) | 569, 580 |
| BstHHI | GCGC | 4 cut(s) | 13, 443, 568, 579 |
| BstKTI | GATC | 4 cut(s) | 237, 586, 744, 750 |
| BstMAI | GTCTC | 1 cut(s) | 619 |
| BstMBI | GATC | 4 cut(s) | 234, 583, 741, 747 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 574, 655, 706 |
| BstNI | CCWGG | 1 cut(s) | 632 |
| BstNSI | RCATGY | 1 cut(s) | 551 |
| BstSCI | CCNGG | 1 cut(s) | 630 |
| BstUI | CGCG | 2 cut(s) | 11, 441 |
| BstV1I | GCAGC | 1 cut(s) | 82 |
| BstV2I | GAAGAC | 2 cut(s) | 45, 248 |
| BtgI | CCRYGG | 1 cut(s) | 559 |
| BtsCI | GGATG | 2 cut(s) | 84, 658 |
| BtsIMutI | CAGTG | 1 cut(s) | 408 |
| Cac8I | GCNNGC | 1 cut(s) | 549 |
| CciI | TCATGA | 2 cut(s) | 328, 693 |
| CfoI | GCGC | 4 cut(s) | 13, 443, 568, 579 |
| Cfr13I | GGNCC | 1 cut(s) | 503 |
| CseI | GACGC | 3 cut(s) | 17, 321, 465 |
| Csp6I | GTAC | 3 cut(s) | 25, 155, 666 |
| CviAII | CATG | 5 cut(s) | 329, 548, 552, 694, 717 |
| CviJI | RGCY | 6 cut(s) | 129, 281, 334, 356, 415, 421 |
| CviKI_1 | RGCY | 6 cut(s) | 129, 281, 334, 356, 415, 421 |
| CviQI | GTAC | 3 cut(s) | 25, 155, 666 |
| DdeI | CTNAG | 4 cut(s) | 109, 411, 474, 616 |
| DpnI | GATC | 4 cut(s) | 236, 585, 743, 749 |
| DpnII | GATC | 4 cut(s) | 234, 583, 741, 747 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 501 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 501 |
| Eco130I | CCWWGG | 1 cut(s) | 447 |
| Eco32I | GATATC | 1 cut(s) | 301 |
| Eco47I | GGWCC | 1 cut(s) | 503 |
| Eco47III | AGCGCT | 1 cut(s) | 567 |
| Eco57I | CTGAAG | 1 cut(s) | 192 |
| Eco88I | CYCGRG | 1 cut(s) | 65 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 32 |
| EcoRI | GAATTC | 1 cut(s) | 200 |
| EcoRII | CCWGG | 1 cut(s) | 630 |
| EcoRV | GATATC | 1 cut(s) | 301 |
| EcoT14I | CCWWGG | 1 cut(s) | 447 |
| EcoT22I | ATGCAT | 2 cut(s) | 271, 553 |
| ErhI | CCWWGG | 1 cut(s) | 447 |
| FaeI | CATG | 5 cut(s) | 332, 551, 555, 697, 720 |
| FatI | CATG | 5 cut(s) | 328, 547, 551, 693, 716 |
| Fnu4HI | GCNGC | 1 cut(s) | 71 |
| FokI | GGATG | 2 cut(s) | 71, 645 |
| Fsp4HI | GCNGC | 1 cut(s) | 71 |
| FspBI | CTAG | 4 cut(s) | 309, 396, 480, 492 |
| GlaI | GCGC | 4 cut(s) | 12, 442, 567, 578 |
| GluI | GCNGC | 1 cut(s) | 71 |
| HaeII | RGCGCY | 2 cut(s) | 569, 580 |
| HapII | CCGG | 1 cut(s) | 422 |
| HgaI | GACGC | 3 cut(s) | 17, 321, 465 |
| HhaI | GCGC | 4 cut(s) | 13, 443, 568, 579 |
| Hin1II | CATG | 5 cut(s) | 332, 551, 555, 697, 720 |
| Hin6I | GCGC | 4 cut(s) | 11, 441, 566, 577 |
| HinP1I | GCGC | 4 cut(s) | 11, 441, 566, 577 |
| HinfI | GANTC | 3 cut(s) | 92, 244, 425 |
| HpaII | CCGG | 1 cut(s) | 422 |
| Hpy166II | GTNNAC | 2 cut(s) | 209, 625 |
| Hpy188I | TCNGA | 3 cut(s) | 172, 294, 619 |
| Hpy188III | TCNNGA | 6 cut(s) | 104, 238, 329, 396, 694, 745 |
| Hpy8I | GTNNAC | 2 cut(s) | 209, 625 |
| HpyAV | CCTTC | 2 cut(s) | 265, 521 |
| HpyCH4III | ACNGT | 1 cut(s) | 560 |
| HpyCH4IV | ACGT | 2 cut(s) | 496, 668 |
| HpyCH4V | TGCA | 3 cut(s) | 269, 551, 673 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 574, 655, 706 |
| HpyF3I | CTNAG | 4 cut(s) | 109, 411, 474, 616 |
| HpySE526I | ACGT | 2 cut(s) | 496, 668 |
| Hsp92II | CATG | 5 cut(s) | 332, 551, 555, 697, 720 |
| HspAI | GCGC | 4 cut(s) | 11, 441, 566, 577 |
| Kzo9I | GATC | 4 cut(s) | 234, 583, 741, 747 |
| LmnI | GCTCC | 4 cut(s) | 18, 463, 563, 573 |
| LpnPI | CCDG | 9 cut(s) | 110, 117, 414, 435, 486, 608, 617, 644, 676 |
| Lsp1109I | GCAGC | 1 cut(s) | 82 |
| LweI | GCATC | 3 cut(s) | 324, 597, 667 |
| MaeI | CTAG | 4 cut(s) | 309, 396, 480, 492 |
| MaeII | ACGT | 2 cut(s) | 496, 668 |
| MalI | GATC | 4 cut(s) | 236, 585, 743, 749 |
| MboI | GATC | 4 cut(s) | 234, 583, 741, 747 |
| MboII | GAAGA | 4 cut(s) | 50, 253, 394, 739 |
| MluCI | AATT | 5 cut(s) | 166, 200, 336, 430, 711 |
| MlyI | GAGTC | 2 cut(s) | 238, 434 |
| MnlI | CCTC | 7 cut(s) | 28, 38, 140, 446, 454, 517, 699 |
| Mph1103I | ATGCAT | 2 cut(s) | 271, 553 |
| MroXI | GAANNNNTTC | 1 cut(s) | 177 |
| MseI | TTAA | 1 cut(s) | 732 |
| MslI | CAYNNNNRTG | 3 cut(s) | 224, 377, 605 |
| MspI | CCGG | 1 cut(s) | 422 |
| MspR9I | CCNGG | 1 cut(s) | 632 |
| MvaI | CCWGG | 1 cut(s) | 632 |
| MvnI | CGCG | 2 cut(s) | 11, 441 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 574, 655, 706 |
| NdeII | GATC | 4 cut(s) | 234, 583, 741, 747 |
| NlaIII | CATG | 5 cut(s) | 332, 551, 555, 697, 720 |
| NlaIV | GGNNCC | 2 cut(s) | 557, 593 |
| NsiI | ATGCAT | 2 cut(s) | 271, 553 |
| NspI | RCATGY | 1 cut(s) | 551 |
| PaeI | GCATGC | 1 cut(s) | 551 |
| PaeR7I | CTCGAG | 1 cut(s) | 65 |
| PagI | TCATGA | 2 cut(s) | 328, 693 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 463 |
| PdmI | GAANNNNTTC | 1 cut(s) | 177 |
| PfeI | GAWTC | 1 cut(s) | 92 |
| PkrI | GCNGC | 1 cut(s) | 72 |
| PleI | GAGTC | 2 cut(s) | 238, 433 |
| PpsI | GAGTC | 2 cut(s) | 238, 433 |
| Psp6I | CCWGG | 1 cut(s) | 630 |
| PspGI | CCWGG | 1 cut(s) | 630 |
| PspN4I | GGNNCC | 2 cut(s) | 557, 593 |
| PspPI | GGNCC | 1 cut(s) | 503 |
| PspXI | VCTCGAGB | 1 cut(s) | 65 |
| RsaI | GTAC | 3 cut(s) | 26, 156, 667 |
| RsaNI | GTAC | 3 cut(s) | 25, 155, 666 |
| RseI | CAYNNNNRTG | 3 cut(s) | 224, 377, 605 |
| SaqAI | TTAA | 1 cut(s) | 732 |
| SatI | GCNGC | 1 cut(s) | 71 |
| Sau3AI | GATC | 4 cut(s) | 234, 583, 741, 747 |
| Sau96I | GGNCC | 1 cut(s) | 503 |
| SchI | GAGTC | 2 cut(s) | 238, 434 |
| ScrFI | CCNGG | 1 cut(s) | 632 |
| SetI | ASST | 8 cut(s) | 30, 257, 336, 358, 499, 597, 633, 671 |
| SfaNI | GCATC | 3 cut(s) | 324, 597, 667 |
| Sfr274I | CTCGAG | 1 cut(s) | 65 |
| SinI | GGWCC | 1 cut(s) | 503 |
| SlaI | CTCGAG | 1 cut(s) | 65 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 224, 377, 605 |
| SmlI | CTYRAG | 1 cut(s) | 65 |
| SmoI | CTYRAG | 1 cut(s) | 65 |
| SphI | GCATGC | 1 cut(s) | 551 |
| Sse9I | AATT | 5 cut(s) | 166, 200, 336, 430, 711 |
| SsiI | CCGC | 1 cut(s) | 133 |
| SspMI | CTAG | 4 cut(s) | 309, 396, 480, 492 |
| StyD4I | CCNGG | 1 cut(s) | 630 |
| StyI | CCWWGG | 1 cut(s) | 447 |
| TaaI | ACNGT | 1 cut(s) | 560 |
| TaiI | ACGT | 2 cut(s) | 499, 671 |
| TaqI | TCGA | 3 cut(s) | 66, 237, 746 |
| TasI | AATT | 5 cut(s) | 166, 200, 336, 430, 711 |
| TatI | WGTACW | 1 cut(s) | 154 |
| TfiI | GAWTC | 1 cut(s) | 92 |
| Tru1I | TTAA | 1 cut(s) | 732 |
| Tru9I | TTAA | 1 cut(s) | 732 |
| TscAI | CASTG | 1 cut(s) | 408 |
| TseI | GCWGC | 1 cut(s) | 70 |
| TspDTI | ATGAA | 4 cut(s) | 17, 317, 362, 710 |
| TspGWI | ACGGA | 1 cut(s) | 77 |
| TspRI | CASTG | 1 cut(s) | 408 |
| VpaK11BI | GGWCC | 1 cut(s) | 503 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 32 |
| XapI | RAATTY | 1 cut(s) | 200 |
| XbaI | TCTAGA | 1 cut(s) | 395 |
| XceI | RCATGY | 1 cut(s) | 551 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 51 |
| XhoI | CTCGAG | 1 cut(s) | 65 |
| XmnI | GAANNNNTTC | 1 cut(s) | 177 |
| XspI | CTAG | 4 cut(s) | 309, 396, 480, 492 |
| Zsp2I | ATGCAT | 2 cut(s) | 271, 553 |