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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 684 |
| AciI | CCGC | 3 cut(s) | 79, 361, 763 |
| AclI | AACGTT | 1 cut(s) | 724 |
| AclWI | GGATC | 2 cut(s) | 551, 725 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AcyI | GRCGYC | 1 cut(s) | 685 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 680 |
| AflII | CTTAAG | 1 cut(s) | 707 |
| AgsI | TTSAA | 2 cut(s) | 376, 668 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 3 cut(s) | 155, 161, 562 |
| AluI | AGCT | 3 cut(s) | 155, 161, 562 |
| Alw21I | GWGCWC | 1 cut(s) | 564 |
| Alw26I | GTCTC | 4 cut(s) | 292, 362, 496, 619 |
| AlwI | GGATC | 2 cut(s) | 551, 725 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspLEI | GCGC | 1 cut(s) | 687 |
| BanI | GGYRCC | 1 cut(s) | 684 |
| BanII | GRGCYC | 1 cut(s) | 564 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| Bbv12I | GWGCWC | 1 cut(s) | 564 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 3 cut(s) | 92, 342, 496 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 515, 549 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BciVI | GTATCC | 1 cut(s) | 706 |
| BcoDI | GTCTC | 4 cut(s) | 292, 362, 496, 619 |
| BfaI | CTAG | 3 cut(s) | 126, 293, 338 |
| BfoI | RGCGCY | 1 cut(s) | 688 |
| BfrI | CTTAAG | 1 cut(s) | 707 |
| BfuI | GTATCC | 1 cut(s) | 706 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 2 cut(s) | 686, 785 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 2 cut(s) | 94, 442 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 683, 715 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 3 cut(s) | 74, 140, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaHI | GRCGYC | 1 cut(s) | 685 |
| BsaI | GGTCTC | 2 cut(s) | 292, 619 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 680 |
| Bse1I | ACTGG | 3 cut(s) | 49, 244, 380 |
| Bse3DI | GCAATG | 1 cut(s) | 462 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseGI | GGATG | 3 cut(s) | 210, 238, 600 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 680 |
| BseMI | GCAATG | 1 cut(s) | 462 |
| BseNI | ACTGG | 3 cut(s) | 49, 244, 380 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshNI | GGYRCC | 1 cut(s) | 684 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiHKAI | GWGCWC | 1 cut(s) | 564 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 680 |
| BsmAI | GTCTC | 4 cut(s) | 292, 362, 496, 619 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| Bso31I | GGTCTC | 2 cut(s) | 292, 619 |
| Bsp1286I | GDGCHC | 1 cut(s) | 564 |
| Bsp143I | GATC | 3 cut(s) | 444, 543, 730 |
| BspACI | CCGC | 3 cut(s) | 79, 361, 763 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspHI | TCATGA | 2 cut(s) | 556, 573 |
| BspLI | GGNNCC | 2 cut(s) | 686, 785 |
| BspPI | GGATC | 2 cut(s) | 551, 725 |
| BspT107I | GGYRCC | 1 cut(s) | 684 |
| BspTI | CTTAAG | 1 cut(s) | 707 |
| BspTNI | GGTCTC | 2 cut(s) | 292, 619 |
| BsrDI | GCAATG | 1 cut(s) | 462 |
| BsrI | ACTGG | 3 cut(s) | 49, 244, 380 |
| BssMI | GATC | 3 cut(s) | 444, 543, 730 |
| BssNI | GRCGYC | 1 cut(s) | 685 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 1 cut(s) | 784 |
| BstACI | GRCGYC | 1 cut(s) | 685 |
| BstAFI | CTTAAG | 1 cut(s) | 707 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 2 cut(s) | 184, 510 |
| BstEII | GGTNACC | 1 cut(s) | 758 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 678 |
| BstF5I | GGATG | 3 cut(s) | 210, 238, 600 |
| BstH2I | RGCGCY | 1 cut(s) | 688 |
| BstHHI | GCGC | 1 cut(s) | 687 |
| BstKTI | GATC | 3 cut(s) | 447, 546, 733 |
| BstMAI | GTCTC | 4 cut(s) | 292, 362, 496, 619 |
| BstMBI | GATC | 3 cut(s) | 444, 543, 730 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 691 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstPI | GGTNACC | 1 cut(s) | 758 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| BsuI | GTATCC | 1 cut(s) | 706 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 3 cut(s) | 210, 238, 600 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 2 cut(s) | 556, 573 |
| CfoI | GCGC | 1 cut(s) | 687 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 3 cut(s) | 557, 574, 593 |
| CviJI | RGCY | 9 cut(s) | 48, 129, 155, 161, 182, 280, 379, 562, 671 |
| CviKI_1 | RGCY | 9 cut(s) | 48, 129, 155, 161, 182, 280, 379, 562, 671 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 2 cut(s) | 184, 510 |
| DinI | GGCGCC | 1 cut(s) | 686 |
| DpnI | GATC | 3 cut(s) | 446, 545, 732 |
| DpnII | GATC | 3 cut(s) | 444, 543, 730 |
| Eam1104I | CTCTTC | 1 cut(s) | 784 |
| EarI | CTCTTC | 1 cut(s) | 784 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 562 |
| Eco24I | GRGCYC | 1 cut(s) | 564 |
| Eco31I | GGTCTC | 2 cut(s) | 292, 619 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco53kI | GAGCTC | 1 cut(s) | 562 |
| Eco91I | GGTNACC | 1 cut(s) | 758 |
| EcoICRI | GAGCTC | 1 cut(s) | 562 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 678 |
| EcoO65I | GGTNACC | 1 cut(s) | 758 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT38I | GRGCYC | 1 cut(s) | 564 |
| EgeI | GGCGCC | 1 cut(s) | 686 |
| EheI | GGCGCC | 1 cut(s) | 686 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaeI | CATG | 3 cut(s) | 560, 577, 596 |
| FatI | CATG | 3 cut(s) | 556, 573, 592 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 3 cut(s) | 197, 245, 587 |
| FriOI | GRGCYC | 1 cut(s) | 564 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 3 cut(s) | 126, 293, 338 |
| GlaI | GCGC | 1 cut(s) | 686 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 1 cut(s) | 688 |
| HhaI | GCGC | 1 cut(s) | 687 |
| Hin1I | GRCGYC | 1 cut(s) | 685 |
| Hin1II | CATG | 3 cut(s) | 560, 577, 596 |
| Hin6I | GCGC | 1 cut(s) | 685 |
| HinP1I | GCGC | 1 cut(s) | 685 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 7 cut(s) | 102, 115, 122, 236, 472, 522, 570 |
| Hpy188I | TCNGA | 4 cut(s) | 400, 651, 721, 730 |
| Hpy188III | TCNNGA | 7 cut(s) | 51, 119, 332, 386, 557, 574, 624 |
| HpyAV | CCTTC | 2 cut(s) | 270, 493 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 312, 724 |
| HpyCH4V | TGCA | 3 cut(s) | 455, 497, 536 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 691 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 510 |
| HpySE526I | ACGT | 3 cut(s) | 135, 312, 724 |
| Hsp92I | GRCGYC | 1 cut(s) | 685 |
| Hsp92II | CATG | 3 cut(s) | 560, 577, 596 |
| HspAI | GCGC | 1 cut(s) | 685 |
| KasI | GGCGCC | 1 cut(s) | 684 |
| Kzo9I | GATC | 3 cut(s) | 444, 543, 730 |
| LmnI | GCTCC | 2 cut(s) | 34, 246 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 2 cut(s) | 94, 442 |
| MaeI | CTAG | 3 cut(s) | 126, 293, 338 |
| MaeII | ACGT | 3 cut(s) | 135, 312, 724 |
| MaeIII | GTNAC | 4 cut(s) | 5, 317, 529, 758 |
| MalI | GATC | 3 cut(s) | 446, 545, 732 |
| MboI | GATC | 3 cut(s) | 444, 543, 730 |
| MboII | GAAGA | 5 cut(s) | 275, 278, 308, 481, 622 |
| MhlI | GDGCHC | 1 cut(s) | 564 |
| MluCI | AATT | 4 cut(s) | 17, 428, 619, 658 |
| Mly113I | GGCGCC | 1 cut(s) | 685 |
| MlyI | GAGTC | 2 cut(s) | 131, 466 |
| MnlI | CCTC | 3 cut(s) | 181, 674, 785 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 3 cut(s) | 422, 708, 796 |
| MslI | CAYNNNNRTG | 2 cut(s) | 231, 605 |
| MspCI | CTTAAG | 1 cut(s) | 707 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 691 |
| NarI | GGCGCC | 1 cut(s) | 685 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 3 cut(s) | 444, 543, 730 |
| NlaIII | CATG | 3 cut(s) | 560, 577, 596 |
| NlaIV | GGNNCC | 2 cut(s) | 686, 785 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| PagI | TCATGA | 2 cut(s) | 556, 573 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 5 cut(s) | 102, 115, 236, 522, 570 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 2 cut(s) | 130, 466 |
| PluTI | GGCGCC | 1 cut(s) | 688 |
| PpsI | GAGTC | 2 cut(s) | 130, 466 |
| Psp124BI | GAGCTC | 1 cut(s) | 564 |
| Psp1406I | AACGTT | 1 cut(s) | 724 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspEI | GGTNACC | 1 cut(s) | 758 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 2 cut(s) | 686, 785 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 2 cut(s) | 231, 605 |
| SacI | GAGCTC | 1 cut(s) | 564 |
| SaqAI | TTAA | 3 cut(s) | 422, 708, 796 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 3 cut(s) | 444, 543, 730 |
| SchI | GAGTC | 2 cut(s) | 131, 466 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 1 cut(s) | 564 |
| SfaNI | GCATC | 2 cut(s) | 94, 442 |
| SfoI | GGCGCC | 1 cut(s) | 686 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 231, 605 |
| SmlI | CTYRAG | 4 cut(s) | 89, 119, 156, 707 |
| SmoI | CTYRAG | 4 cut(s) | 89, 119, 156, 707 |
| Sse9I | AATT | 4 cut(s) | 17, 428, 619, 658 |
| SsiI | CCGC | 3 cut(s) | 79, 361, 763 |
| SspDI | GGCGCC | 1 cut(s) | 684 |
| SspI | AATATT | 1 cut(s) | 303 |
| SspMI | CTAG | 3 cut(s) | 126, 293, 338 |
| SstI | GAGCTC | 1 cut(s) | 564 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 3 cut(s) | 138, 315, 727 |
| TaqI | TCGA | 4 cut(s) | 96, 520, 525, 623 |
| TasI | AATT | 4 cut(s) | 17, 428, 619, 658 |
| TfiI | GAWTC | 5 cut(s) | 102, 115, 236, 522, 570 |
| Tru1I | TTAA | 3 cut(s) | 422, 708, 796 |
| Tru9I | TTAA | 3 cut(s) | 422, 708, 796 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 5 cut(s) | 272, 276, 545, 562, 590 |
| TspGWI | ACGGA | 3 cut(s) | 305, 556, 796 |
| Vha464I | CTTAAG | 1 cut(s) | 707 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 678 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 3 cut(s) | 126, 293, 338 |