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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 668 |
| Acc36I | ACCTGC | 1 cut(s) | 668 |
| Acc65I | GGTACC | 1 cut(s) | 329 |
| AccB1I | GGYRCC | 1 cut(s) | 329 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 536 |
| AccII | CGCG | 3 cut(s) | 375, 387, 705 |
| AciI | CCGC | 1 cut(s) | 705 |
| AcuI | CTGAAG | 3 cut(s) | 57, 132, 372 |
| AcvI | CACGTG | 1 cut(s) | 533 |
| AdeI | CACNNNGTG | 1 cut(s) | 536 |
| AfaI | GTAC | 2 cut(s) | 331, 791 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 440, 536 |
| AgeI | ACCGGT | 1 cut(s) | 326 |
| AgsI | TTSAA | 2 cut(s) | 157, 226 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 124, 649 |
| AjiI | CACGTC | 1 cut(s) | 518 |
| AjnI | CCWGG | 2 cut(s) | 216, 552 |
| AluBI | AGCT | 2 cut(s) | 110, 566 |
| AluI | AGCT | 2 cut(s) | 110, 566 |
| Alw26I | GTCTC | 2 cut(s) | 430, 657 |
| Ama87I | CYCGRG | 1 cut(s) | 711 |
| AoxI | GGCC | 7 cut(s) | 320, 422, 455, 526, 586, 591, 717 |
| ApaI | GGGCCC | 1 cut(s) | 459 |
| ApeKI | GCWGC | 1 cut(s) | 779 |
| AseI | ATTAAT | 1 cut(s) | 15 |
| AsiGI | ACCGGT | 1 cut(s) | 326 |
| Asp718I | GGTACC | 1 cut(s) | 329 |
| AspLEI | GCGC | 1 cut(s) | 389 |
| AspS9I | GGNCC | 9 cut(s) | 118, 126, 321, 455, 456, 527, 556, 587, 592 |
| AsuC2I | CCSGG | 2 cut(s) | 401, 590 |
| AsuHPI | GGTGA | 2 cut(s) | 253, 590 |
| AvaI | CYCGRG | 1 cut(s) | 711 |
| AvaII | GGWCC | 3 cut(s) | 118, 126, 556 |
| BaeGI | GKGCMC | 1 cut(s) | 459 |
| BanI | GGYRCC | 1 cut(s) | 329 |
| BanII | GRGCYC | 1 cut(s) | 459 |
| BbrPI | CACGTG | 1 cut(s) | 533 |
| BbvI | GCAGC | 1 cut(s) | 791 |
| BccI | CCATC | 2 cut(s) | 168, 378 |
| BceAI | ACGGC | 1 cut(s) | 648 |
| BciT130I | CCWGG | 2 cut(s) | 218, 554 |
| BciVI | GTATCC | 1 cut(s) | 742 |
| BclI | TGATCA | 1 cut(s) | 310 |
| BcnI | CCSGG | 2 cut(s) | 401, 590 |
| BcoDI | GTCTC | 2 cut(s) | 430, 657 |
| BfaI | CTAG | 3 cut(s) | 143, 231, 243 |
| BfuAI | ACCTGC | 1 cut(s) | 668 |
| BfuI | GTATCC | 1 cut(s) | 742 |
| BisI | GCNGC | 1 cut(s) | 780 |
| BlsI | GCNGC | 1 cut(s) | 781 |
| Bme1390I | CCNGG | 4 cut(s) | 218, 401, 554, 590 |
| Bme18I | GGWCC | 3 cut(s) | 118, 126, 556 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 124, 649 |
| BmeT110I | CYCGRG | 1 cut(s) | 711 |
| BmgBI | CACGTC | 1 cut(s) | 518 |
| BmgT120I | GGNCC | 9 cut(s) | 118, 126, 321, 455, 456, 527, 556, 587, 592 |
| BmiI | GGNNCC | 4 cut(s) | 120, 128, 331, 457 |
| BmrFI | CCNGG | 4 cut(s) | 218, 401, 554, 590 |
| BpuEI | CTTGAG | 1 cut(s) | 77 |
| BpuMI | CCSGG | 2 cut(s) | 401, 590 |
| BsaAI | YACGTR | 1 cut(s) | 533 |
| BsaBI | GATNNNNATC | 1 cut(s) | 65 |
| BsaI | GGTCTC | 1 cut(s) | 657 |
| BsaJI | CCNNGG | 6 cut(s) | 122, 400, 487, 500, 552, 756 |
| BsaWI | WCCGGW | 1 cut(s) | 326 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 440, 536 |
| Bse118I | RCCGGY | 1 cut(s) | 326 |
| Bse1I | ACTGG | 1 cut(s) | 203 |
| Bse8I | GATNNNNATC | 1 cut(s) | 65 |
| BseBI | CCWGG | 2 cut(s) | 218, 554 |
| BseDI | CCNNGG | 6 cut(s) | 122, 400, 487, 500, 552, 756 |
| BseJI | GATNNNNATC | 1 cut(s) | 65 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 440, 536 |
| BseMII | CTCAG | 2 cut(s) | 264, 617 |
| BseNI | ACTGG | 1 cut(s) | 203 |
| BseRI | GAGGAG | 1 cut(s) | 525 |
| BseSI | GKGCMC | 1 cut(s) | 459 |
| BseXI | GCAGC | 1 cut(s) | 791 |
| Bsh1236I | CGCG | 3 cut(s) | 375, 387, 705 |
| BshFI | GGCC | 7 cut(s) | 322, 424, 457, 528, 588, 593, 719 |
| BshNI | GGYRCC | 1 cut(s) | 329 |
| BshTI | ACCGGT | 1 cut(s) | 326 |
| BsiHKCI | CYCGRG | 1 cut(s) | 711 |
| BsiSI | CCGG | 3 cut(s) | 327, 400, 590 |
| BslFI | GGGAC | 1 cut(s) | 112 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 440, 536 |
| BsmAI | GTCTC | 2 cut(s) | 430, 657 |
| BsmFI | GGGAC | 1 cut(s) | 112 |
| BsnI | GGCC | 7 cut(s) | 322, 424, 457, 528, 588, 593, 719 |
| Bso31I | GGTCTC | 1 cut(s) | 657 |
| BsoBI | CYCGRG | 1 cut(s) | 711 |
| Bsp120I | GGGCCC | 1 cut(s) | 455 |
| Bsp1286I | GDGCHC | 1 cut(s) | 459 |
| Bsp143I | GATC | 2 cut(s) | 5, 310 |
| Bsp68I | TCGCGA | 1 cut(s) | 375 |
| BspACI | CCGC | 1 cut(s) | 705 |
| BspANI | GGCC | 7 cut(s) | 322, 424, 457, 528, 588, 593, 719 |
| BspCNI | CTCAG | 2 cut(s) | 263, 616 |
| BspFNI | CGCG | 3 cut(s) | 375, 387, 705 |
| BspLI | GGNNCC | 4 cut(s) | 120, 128, 331, 457 |
| BspMI | ACCTGC | 1 cut(s) | 668 |
| BspQI | GCTCTTC | 1 cut(s) | 141 |
| BspT107I | GGYRCC | 1 cut(s) | 329 |
| BspTNI | GGTCTC | 1 cut(s) | 657 |
| BsrFI | RCCGGY | 1 cut(s) | 326 |
| BsrI | ACTGG | 1 cut(s) | 203 |
| BssAI | RCCGGY | 1 cut(s) | 326 |
| BssECI | CCNNGG | 6 cut(s) | 122, 400, 487, 500, 552, 756 |
| BssMI | GATC | 2 cut(s) | 5, 310 |
| BssT1I | CCWWGG | 3 cut(s) | 487, 500, 756 |
| Bst2UI | CCWGG | 2 cut(s) | 218, 554 |
| Bst4CI | ACNGT | 3 cut(s) | 126, 265, 479 |
| Bst6I | CTCTTC | 4 cut(s) | 108, 141, 672, 726 |
| BstBAI | YACGTR | 1 cut(s) | 533 |
| BstC8I | GCNNGC | 1 cut(s) | 276 |
| BstDEI | CTNAG | 2 cut(s) | 250, 603 |
| BstDSI | CCRYGG | 1 cut(s) | 122 |
| BstEII | GGTNACC | 1 cut(s) | 259 |
| BstFNI | CGCG | 3 cut(s) | 375, 387, 705 |
| BstHHI | GCGC | 1 cut(s) | 389 |
| BstKTI | GATC | 2 cut(s) | 8, 313 |
| BstMAI | GTCTC | 2 cut(s) | 430, 657 |
| BstMBI | GATC | 2 cut(s) | 5, 310 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 199 |
| BstNI | CCWGG | 2 cut(s) | 218, 554 |
| BstPI | GGTNACC | 1 cut(s) | 259 |
| BstSCI | CCNGG | 4 cut(s) | 216, 399, 552, 588 |
| BstSLI | GKGCMC | 1 cut(s) | 459 |
| BstUI | CGCG | 3 cut(s) | 375, 387, 705 |
| BstV1I | GCAGC | 1 cut(s) | 791 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 727 |
| BsuI | GTATCC | 1 cut(s) | 742 |
| BsuRI | GGCC | 7 cut(s) | 322, 424, 457, 528, 588, 593, 719 |
| BtgI | CCRYGG | 1 cut(s) | 122 |
| BtgZI | GCGATG | 2 cut(s) | 13, 356 |
| BtrI | CACGTC | 1 cut(s) | 518 |
| BtsIMutI | CAGTG | 1 cut(s) | 639 |
| BtuMI | TCGCGA | 1 cut(s) | 375 |
| BveI | ACCTGC | 1 cut(s) | 668 |
| Cac8I | GCNNGC | 1 cut(s) | 276 |
| CfoI | GCGC | 1 cut(s) | 389 |
| Cfr10I | RCCGGY | 1 cut(s) | 326 |
| Cfr13I | GGNCC | 9 cut(s) | 118, 126, 321, 455, 456, 527, 556, 587, 592 |
| CseI | GACGC | 1 cut(s) | 711 |
| Csp6I | GTAC | 2 cut(s) | 330, 790 |
| CspAI | ACCGGT | 1 cut(s) | 326 |
| CviAII | CATG | 1 cut(s) | 440 |
| CviQI | GTAC | 2 cut(s) | 330, 790 |
| DdeI | CTNAG | 2 cut(s) | 250, 603 |
| DpnI | GATC | 2 cut(s) | 7, 312 |
| DpnII | GATC | 2 cut(s) | 5, 310 |
| DraIII | CACNNNGTG | 1 cut(s) | 536 |
| DriI | GACNNNNNGTC | 2 cut(s) | 124, 649 |
| Eam1104I | CTCTTC | 4 cut(s) | 108, 141, 672, 726 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 124, 649 |
| EarI | CTCTTC | 4 cut(s) | 108, 141, 672, 726 |
| Eco130I | CCWWGG | 3 cut(s) | 487, 500, 756 |
| Eco147I | AGGCCT | 1 cut(s) | 424 |
| Eco24I | GRGCYC | 1 cut(s) | 459 |
| Eco31I | GGTCTC | 1 cut(s) | 657 |
| Eco47I | GGWCC | 3 cut(s) | 118, 126, 556 |
| Eco57I | CTGAAG | 3 cut(s) | 57, 132, 372 |
| Eco72I | CACGTG | 1 cut(s) | 533 |
| Eco88I | CYCGRG | 1 cut(s) | 711 |
| Eco91I | GGTNACC | 1 cut(s) | 259 |
| EcoO109I | RGGNCCY | 1 cut(s) | 118 |
| EcoO65I | GGTNACC | 1 cut(s) | 259 |
| EcoRII | CCWGG | 2 cut(s) | 216, 552 |
| EcoT14I | CCWWGG | 3 cut(s) | 487, 500, 756 |
| EcoT38I | GRGCYC | 1 cut(s) | 459 |
| ErhI | CCWWGG | 3 cut(s) | 487, 500, 756 |
| FaeI | CATG | 1 cut(s) | 443 |
| FaqI | GGGAC | 1 cut(s) | 112 |
| FatI | CATG | 1 cut(s) | 439 |
| FauNDI | CATATG | 2 cut(s) | 78, 472 |
| FbaI | TGATCA | 1 cut(s) | 310 |
| Fnu4HI | GCNGC | 1 cut(s) | 780 |
| FriOI | GRGCYC | 1 cut(s) | 459 |
| Fsp4HI | GCNGC | 1 cut(s) | 780 |
| FspBI | CTAG | 3 cut(s) | 143, 231, 243 |
| GlaI | GCGC | 1 cut(s) | 388 |
| GluI | GCNGC | 1 cut(s) | 780 |
| HaeIII | GGCC | 7 cut(s) | 322, 424, 457, 528, 588, 593, 719 |
| HapII | CCGG | 3 cut(s) | 327, 400, 590 |
| HgaI | GACGC | 1 cut(s) | 711 |
| HhaI | GCGC | 1 cut(s) | 389 |
| Hin1II | CATG | 1 cut(s) | 443 |
| Hin6I | GCGC | 1 cut(s) | 387 |
| HinP1I | GCGC | 1 cut(s) | 387 |
| HinfI | GANTC | 4 cut(s) | 153, 246, 607, 734 |
| HpaII | CCGG | 3 cut(s) | 327, 400, 590 |
| HphI | GGTGA | 2 cut(s) | 253, 590 |
| Hpy166II | GTNNAC | 1 cut(s) | 521 |
| Hpy188I | TCNGA | 4 cut(s) | 165, 253, 435, 606 |
| Hpy188III | TCNNGA | 5 cut(s) | 70, 143, 226, 374, 713 |
| Hpy8I | GTNNAC | 1 cut(s) | 521 |
| HpyAV | CCTTC | 4 cut(s) | 40, 405, 411, 438 |
| HpyCH4III | ACNGT | 3 cut(s) | 126, 265, 479 |
| HpyCH4IV | ACGT | 4 cut(s) | 211, 430, 517, 532 |
| HpyCH4V | TGCA | 1 cut(s) | 668 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 199 |
| HpyF3I | CTNAG | 2 cut(s) | 250, 603 |
| HpySE526I | ACGT | 4 cut(s) | 211, 430, 517, 532 |
| Hsp92II | CATG | 1 cut(s) | 443 |
| HspAI | GCGC | 1 cut(s) | 387 |
| KpnI | GGTACC | 1 cut(s) | 333 |
| Ksp22I | TGATCA | 1 cut(s) | 310 |
| Kzo9I | GATC | 2 cut(s) | 5, 310 |
| LguI | GCTCTTC | 1 cut(s) | 141 |
| Lsp1109I | GCAGC | 1 cut(s) | 791 |
| MaeI | CTAG | 3 cut(s) | 143, 231, 243 |
| MaeII | ACGT | 4 cut(s) | 211, 430, 517, 532 |
| MaeIII | GTNAC | 3 cut(s) | 259, 479, 596 |
| MalI | GATC | 2 cut(s) | 7, 312 |
| MboI | GATC | 2 cut(s) | 5, 310 |
| MboII | GAAGA | 5 cut(s) | 50, 125, 158, 689, 743 |
| MhlI | GDGCHC | 1 cut(s) | 459 |
| MluCI | AATT | 2 cut(s) | 254, 570 |
| MlyI | GAGTC | 1 cut(s) | 743 |
| MmeI | TCCRAC | 1 cut(s) | 583 |
| MseI | TTAA | 1 cut(s) | 15 |
| MspI | CCGG | 3 cut(s) | 327, 400, 590 |
| MspR9I | CCNGG | 4 cut(s) | 218, 401, 554, 590 |
| MvaI | CCWGG | 2 cut(s) | 218, 554 |
| MvnI | CGCG | 3 cut(s) | 375, 387, 705 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 199 |
| NciI | CCSGG | 2 cut(s) | 401, 590 |
| NdeI | CATATG | 2 cut(s) | 78, 472 |
| NdeII | GATC | 2 cut(s) | 5, 310 |
| NlaIII | CATG | 1 cut(s) | 443 |
| NlaIV | GGNNCC | 4 cut(s) | 120, 128, 331, 457 |
| NmuCI | GTSAC | 3 cut(s) | 259, 479, 596 |
| NruI | TCGCGA | 1 cut(s) | 375 |
| PaeR7I | CTCGAG | 1 cut(s) | 711 |
| PaqCI | CACCTGC | 1 cut(s) | 668 |
| PceI | AGGCCT | 1 cut(s) | 424 |
| PciSI | GCTCTTC | 1 cut(s) | 141 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 514, 661, 709 |
| PfeI | GAWTC | 3 cut(s) | 153, 246, 607 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 536 |
| PfoI | TCCNGGA | 1 cut(s) | 216 |
| PinAI | ACCGGT | 1 cut(s) | 326 |
| PkrI | GCNGC | 1 cut(s) | 781 |
| PleI | GAGTC | 1 cut(s) | 742 |
| PmaCI | CACGTG | 1 cut(s) | 533 |
| PmlI | CACGTG | 1 cut(s) | 533 |
| PpsI | GAGTC | 1 cut(s) | 742 |
| Ppu21I | YACGTR | 1 cut(s) | 533 |
| PpuMI | RGGWCCY | 1 cut(s) | 118 |
| PshBI | ATTAAT | 1 cut(s) | 15 |
| Psp5II | RGGWCCY | 1 cut(s) | 118 |
| Psp6I | CCWGG | 2 cut(s) | 216, 552 |
| PspCI | CACGTG | 1 cut(s) | 533 |
| PspEI | GGTNACC | 1 cut(s) | 259 |
| PspGI | CCWGG | 2 cut(s) | 216, 552 |
| PspN4I | GGNNCC | 4 cut(s) | 120, 128, 331, 457 |
| PspOMI | GGGCCC | 1 cut(s) | 455 |
| PspPI | GGNCC | 9 cut(s) | 118, 126, 321, 455, 456, 527, 556, 587, 592 |
| PspPPI | RGGWCCY | 1 cut(s) | 118 |
| RruI | TCGCGA | 1 cut(s) | 375 |
| RsaI | GTAC | 2 cut(s) | 331, 791 |
| RsaNI | GTAC | 2 cut(s) | 330, 790 |
| SapI | GCTCTTC | 1 cut(s) | 141 |
| SaqAI | TTAA | 1 cut(s) | 15 |
| SatI | GCNGC | 1 cut(s) | 780 |
| Sau3AI | GATC | 2 cut(s) | 5, 310 |
| Sau96I | GGNCC | 9 cut(s) | 118, 126, 321, 455, 456, 527, 556, 587, 592 |
| SchI | GAGTC | 1 cut(s) | 743 |
| ScrFI | CCNGG | 4 cut(s) | 218, 401, 554, 590 |
| SduI | GDGCHC | 1 cut(s) | 459 |
| Sfr274I | CTCGAG | 1 cut(s) | 711 |
| SinI | GGWCC | 3 cut(s) | 118, 126, 556 |
| SlaI | CTCGAG | 1 cut(s) | 711 |
| SmlI | CTYRAG | 2 cut(s) | 92, 711 |
| SmoI | CTYRAG | 2 cut(s) | 92, 711 |
| Sse9I | AATT | 2 cut(s) | 254, 570 |
| SseBI | AGGCCT | 1 cut(s) | 424 |
| SsiI | CCGC | 1 cut(s) | 705 |
| SspI | AATATT | 1 cut(s) | 104 |
| SspMI | CTAG | 3 cut(s) | 143, 231, 243 |
| StuI | AGGCCT | 1 cut(s) | 424 |
| StyD4I | CCNGG | 4 cut(s) | 216, 399, 552, 588 |
| StyI | CCWWGG | 3 cut(s) | 487, 500, 756 |
| TaaI | ACNGT | 3 cut(s) | 126, 265, 479 |
| TaiI | ACGT | 4 cut(s) | 214, 433, 520, 535 |
| TaqI | TCGA | 3 cut(s) | 508, 712, 795 |
| TasI | AATT | 2 cut(s) | 254, 570 |
| TfiI | GAWTC | 3 cut(s) | 153, 246, 607 |
| Tru1I | TTAA | 1 cut(s) | 15 |
| Tru9I | TTAA | 1 cut(s) | 15 |
| TscAI | CASTG | 1 cut(s) | 646 |
| TseFI | GTSAC | 3 cut(s) | 259, 479, 596 |
| TseI | GCWGC | 1 cut(s) | 779 |
| Tsp45I | GTSAC | 3 cut(s) | 259, 479, 596 |
| TspDTI | ATGAA | 3 cut(s) | 55, 59, 690 |
| TspRI | CASTG | 1 cut(s) | 646 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 536 |
| VpaK11BI | GGWCC | 3 cut(s) | 118, 126, 556 |
| VspI | ATTAAT | 1 cut(s) | 15 |
| XbaI | TCTAGA | 1 cut(s) | 142 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 129, 782 |
| XhoI | CTCGAG | 1 cut(s) | 711 |
| XspI | CTAG | 3 cut(s) | 143, 231, 243 |