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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 30 |
| AciI | CCGC | 5 cut(s) | 66, 182, 298, 398, 580 |
| AcsI | RAATTY | 1 cut(s) | 647 |
| AcuI | CTGAAG | 1 cut(s) | 774 |
| AfaI | GTAC | 2 cut(s) | 169, 467 |
| AflIII | ACRYGT | 1 cut(s) | 164 |
| AgsI | TTSAA | 1 cut(s) | 595 |
| AjnI | CCWGG | 1 cut(s) | 348 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 130, 162, 507, 539 |
| AleI | CACNNNNGTG | 1 cut(s) | 36 |
| AluBI | AGCT | 4 cut(s) | 374, 380, 780, 790 |
| AluI | AGCT | 4 cut(s) | 374, 380, 780, 790 |
| Alw21I | GWGCWC | 1 cut(s) | 782 |
| Alw26I | GTCTC | 3 cut(s) | 155, 511, 715 |
| Ama87I | CYCGRG | 1 cut(s) | 338 |
| AoxI | GGCC | 3 cut(s) | 312, 399, 574 |
| ApeKI | GCWGC | 5 cut(s) | 11, 20, 41, 57, 76 |
| ApoI | RAATTY | 1 cut(s) | 647 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 624 |
| AspLEI | GCGC | 1 cut(s) | 31 |
| AvaI | CYCGRG | 1 cut(s) | 338 |
| BanII | GRGCYC | 1 cut(s) | 782 |
| BbsI | GAAGAC | 2 cut(s) | 695, 762 |
| Bbv12I | GWGCWC | 1 cut(s) | 782 |
| BbvI | GCAGC | 4 cut(s) | 32, 53, 63, 69 |
| BccI | CCATC | 3 cut(s) | 434, 561, 715 |
| BciT130I | CCWGG | 1 cut(s) | 350 |
| BciVI | GTATCC | 1 cut(s) | 322 |
| BcoDI | GTCTC | 3 cut(s) | 155, 511, 715 |
| BfaI | CTAG | 2 cut(s) | 345, 557 |
| BfmI | CTRYAG | 2 cut(s) | 18, 55 |
| BfuI | GTATCC | 1 cut(s) | 322 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 407 |
| BisI | GCNGC | 7 cut(s) | 12, 21, 42, 58, 66, 77, 399 |
| BlsI | GCNGC | 7 cut(s) | 13, 22, 43, 59, 67, 78, 400 |
| Bme1390I | CCNGG | 1 cut(s) | 350 |
| BmeT110I | CYCGRG | 1 cut(s) | 338 |
| BmrFI | CCNGG | 1 cut(s) | 350 |
| BmsI | GCATC | 1 cut(s) | 313 |
| BpiI | GAAGAC | 2 cut(s) | 695, 762 |
| BpmI | CTGGAG | 1 cut(s) | 446 |
| BpuEI | CTTGAG | 2 cut(s) | 293, 360 |
| Bsa29I | ATCGAT | 1 cut(s) | 744 |
| BsaI | GGTCTC | 1 cut(s) | 511 |
| Bse1I | ACTGG | 2 cut(s) | 268, 463 |
| Bse3DI | GCAATG | 2 cut(s) | 60, 535 |
| BseBI | CCWGG | 1 cut(s) | 350 |
| BseCI | ATCGAT | 1 cut(s) | 744 |
| BseGI | GGATG | 2 cut(s) | 429, 457 |
| BseMI | GCAATG | 2 cut(s) | 60, 535 |
| BseNI | ACTGG | 2 cut(s) | 268, 463 |
| BseXI | GCAGC | 4 cut(s) | 32, 53, 63, 69 |
| BsgI | GTGCAG | 2 cut(s) | 60, 132 |
| BshFI | GGCC | 3 cut(s) | 314, 401, 576 |
| BshVI | ATCGAT | 1 cut(s) | 744 |
| BsiHKAI | GWGCWC | 1 cut(s) | 782 |
| BsiHKCI | CYCGRG | 1 cut(s) | 338 |
| BsmAI | GTCTC | 3 cut(s) | 155, 511, 715 |
| BsmBI | CGTCTC | 1 cut(s) | 715 |
| BsnI | GGCC | 3 cut(s) | 314, 401, 576 |
| Bso31I | GGTCTC | 1 cut(s) | 511 |
| BsoBI | CYCGRG | 1 cut(s) | 338 |
| Bsp1286I | GDGCHC | 1 cut(s) | 782 |
| Bsp1407I | TGTACA | 1 cut(s) | 167 |
| Bsp143I | GATC | 2 cut(s) | 115, 663 |
| BspACI | CCGC | 5 cut(s) | 66, 182, 298, 398, 580 |
| BspANI | GGCC | 3 cut(s) | 314, 401, 576 |
| BspDI | ATCGAT | 1 cut(s) | 744 |
| BspHI | TCATGA | 1 cut(s) | 774 |
| BspMAI | CTGCAG | 2 cut(s) | 22, 59 |
| BspTNI | GGTCTC | 1 cut(s) | 511 |
| BsrDI | GCAATG | 2 cut(s) | 60, 535 |
| BsrGI | TGTACA | 1 cut(s) | 167 |
| BsrI | ACTGG | 2 cut(s) | 268, 463 |
| BssMI | GATC | 2 cut(s) | 115, 663 |
| Bst2UI | CCWGG | 1 cut(s) | 350 |
| Bst4CI | ACNGT | 1 cut(s) | 364 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 26 |
| BstAUI | TGTACA | 1 cut(s) | 167 |
| BstC8I | GCNNGC | 6 cut(s) | 70, 74, 99, 123, 198, 302 |
| BstDEI | CTNAG | 2 cut(s) | 403, 729 |
| BstF5I | GGATG | 2 cut(s) | 429, 457 |
| BstHHI | GCGC | 1 cut(s) | 31 |
| BstKTI | GATC | 2 cut(s) | 118, 666 |
| BstMAI | GTCTC | 3 cut(s) | 155, 511, 715 |
| BstMBI | GATC | 2 cut(s) | 115, 663 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 17, 20, 26, 57, 386, 395, 407, 416 |
| BstNI | CCWGG | 1 cut(s) | 350 |
| BstNSI | RCATGY | 5 cut(s) | 72, 101, 168, 200, 358 |
| BstSCI | CCNGG | 1 cut(s) | 348 |
| BstSFI | CTRYAG | 2 cut(s) | 18, 55 |
| BstV1I | GCAGC | 4 cut(s) | 32, 53, 63, 69 |
| BstV2I | GAAGAC | 2 cut(s) | 695, 762 |
| Bsu15I | ATCGAT | 1 cut(s) | 744 |
| BsuI | GTATCC | 1 cut(s) | 322 |
| BsuRI | GGCC | 3 cut(s) | 314, 401, 576 |
| BsuTUI | ATCGAT | 1 cut(s) | 744 |
| BtsCI | GGATG | 2 cut(s) | 429, 457 |
| Cac8I | GCNNGC | 6 cut(s) | 70, 74, 99, 123, 198, 302 |
| CciI | TCATGA | 1 cut(s) | 774 |
| CfoI | GCGC | 1 cut(s) | 31 |
| ClaI | ATCGAT | 1 cut(s) | 744 |
| Csp6I | GTAC | 2 cut(s) | 168, 466 |
| CviAII | CATG | 9 cut(s) | 36, 69, 98, 165, 197, 325, 355, 572, 775 |
| CviQI | GTAC | 2 cut(s) | 168, 466 |
| DdeI | CTNAG | 2 cut(s) | 403, 729 |
| DpnI | GATC | 2 cut(s) | 117, 665 |
| DpnII | GATC | 2 cut(s) | 115, 663 |
| EciI | GGCGGA | 1 cut(s) | 287 |
| Ecl136II | GAGCTC | 1 cut(s) | 780 |
| Eco24I | GRGCYC | 1 cut(s) | 782 |
| Eco31I | GGTCTC | 1 cut(s) | 511 |
| Eco32I | GATATC | 1 cut(s) | 295 |
| Eco53kI | GAGCTC | 1 cut(s) | 780 |
| Eco57I | CTGAAG | 1 cut(s) | 774 |
| Eco88I | CYCGRG | 1 cut(s) | 338 |
| EcoICRI | GAGCTC | 1 cut(s) | 780 |
| EcoRI | GAATTC | 1 cut(s) | 647 |
| EcoRII | CCWGG | 1 cut(s) | 348 |
| EcoRV | GATATC | 1 cut(s) | 295 |
| EcoT38I | GRGCYC | 1 cut(s) | 782 |
| Esp3I | CGTCTC | 1 cut(s) | 715 |
| FaeI | CATG | 9 cut(s) | 39, 72, 101, 168, 200, 328, 358, 575, 778 |
| FatI | CATG | 9 cut(s) | 35, 68, 97, 164, 196, 324, 354, 571, 774 |
| FauI | CCCGC | 1 cut(s) | 175 |
| FauNDI | CATATG | 1 cut(s) | 447 |
| Fnu4HI | GCNGC | 7 cut(s) | 12, 21, 42, 58, 66, 77, 399 |
| FokI | GGATG | 2 cut(s) | 416, 464 |
| FriOI | GRGCYC | 1 cut(s) | 782 |
| Fsp4HI | GCNGC | 7 cut(s) | 12, 21, 42, 58, 66, 77, 399 |
| FspBI | CTAG | 2 cut(s) | 345, 557 |
| FspI | TGCGCA | 1 cut(s) | 30 |
| GlaI | GCGC | 1 cut(s) | 30 |
| GluI | GCNGC | 7 cut(s) | 12, 21, 42, 58, 66, 77, 399 |
| GsuI | CTGGAG | 1 cut(s) | 446 |
| HaeIII | GGCC | 3 cut(s) | 314, 401, 576 |
| HhaI | GCGC | 1 cut(s) | 31 |
| Hin1II | CATG | 9 cut(s) | 39, 72, 101, 168, 200, 328, 358, 575, 778 |
| Hin6I | GCGC | 1 cut(s) | 29 |
| HinP1I | GCGC | 1 cut(s) | 29 |
| HincII | GTYRAC | 1 cut(s) | 367 |
| HindII | GTYRAC | 1 cut(s) | 367 |
| HindIII | AAGCTT | 1 cut(s) | 378 |
| HinfI | GANTC | 8 cut(s) | 151, 334, 439, 455, 539, 691, 741, 761 |
| Hpy166II | GTNNAC | 2 cut(s) | 170, 367 |
| Hpy188I | TCNGA | 4 cut(s) | 219, 271, 619, 766 |
| Hpy188III | TCNNGA | 5 cut(s) | 290, 338, 551, 605, 775 |
| Hpy8I | GTNNAC | 2 cut(s) | 170, 367 |
| HpyAV | CCTTC | 2 cut(s) | 489, 761 |
| HpyCH4III | ACNGT | 1 cut(s) | 364 |
| HpyCH4V | TGCA | 6 cut(s) | 20, 41, 57, 113, 212, 716 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 17, 20, 26, 57, 386, 395, 407, 416 |
| HpyF3I | CTNAG | 2 cut(s) | 403, 729 |
| Hsp92II | CATG | 9 cut(s) | 39, 72, 101, 168, 200, 328, 358, 575, 778 |
| HspAI | GCGC | 1 cut(s) | 29 |
| Kzo9I | GATC | 2 cut(s) | 115, 663 |
| LmnI | GCTCC | 3 cut(s) | 253, 465, 787 |
| Lsp1109I | GCAGC | 4 cut(s) | 32, 53, 63, 69 |
| LweI | GCATC | 1 cut(s) | 313 |
| MaeI | CTAG | 2 cut(s) | 345, 557 |
| MaeIII | GTNAC | 4 cut(s) | 224, 536, 724, 748 |
| MalI | GATC | 2 cut(s) | 117, 665 |
| MboI | GATC | 2 cut(s) | 115, 663 |
| MboII | GAAGA | 5 cut(s) | 494, 497, 527, 700, 767 |
| MhlI | GDGCHC | 1 cut(s) | 782 |
| MluCI | AATT | 2 cut(s) | 236, 647 |
| MlyI | GAGTC | 4 cut(s) | 160, 433, 533, 685 |
| MnlI | CCTC | 3 cut(s) | 172, 400, 587 |
| MroXI | GAANNNNTTC | 1 cut(s) | 624 |
| MseI | TTAA | 2 cut(s) | 633, 641 |
| MslI | CAYNNNNRTG | 4 cut(s) | 36, 207, 434, 450 |
| MspR9I | CCNGG | 1 cut(s) | 350 |
| MvaI | CCWGG | 1 cut(s) | 350 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 17, 20, 26, 57, 386, 395, 407, 416 |
| NdeI | CATATG | 1 cut(s) | 447 |
| NdeII | GATC | 2 cut(s) | 115, 663 |
| NlaIII | CATG | 9 cut(s) | 39, 72, 101, 168, 200, 328, 358, 575, 778 |
| NmuCI | GTSAC | 1 cut(s) | 536 |
| NsbI | TGCGCA | 1 cut(s) | 30 |
| NspI | RCATGY | 5 cut(s) | 72, 101, 168, 200, 358 |
| OliI | CACNNNNGTG | 1 cut(s) | 36 |
| PaeI | GCATGC | 3 cut(s) | 72, 101, 200 |
| PaeR7I | CTCGAG | 1 cut(s) | 338 |
| PagI | TCATGA | 1 cut(s) | 774 |
| PciI | ACATGT | 1 cut(s) | 164 |
| PdmI | GAANNNNTTC | 1 cut(s) | 624 |
| PfeI | GAWTC | 4 cut(s) | 334, 455, 741, 761 |
| PkrI | GCNGC | 7 cut(s) | 13, 22, 43, 59, 67, 78, 400 |
| PleI | GAGTC | 4 cut(s) | 159, 433, 533, 685 |
| PpsI | GAGTC | 4 cut(s) | 159, 433, 533, 685 |
| PscI | ACATGT | 1 cut(s) | 164 |
| Psp124BI | GAGCTC | 1 cut(s) | 782 |
| Psp6I | CCWGG | 1 cut(s) | 348 |
| PspGI | CCWGG | 1 cut(s) | 348 |
| PstI | CTGCAG | 2 cut(s) | 22, 59 |
| RsaI | GTAC | 2 cut(s) | 169, 467 |
| RsaNI | GTAC | 2 cut(s) | 168, 466 |
| RseI | CAYNNNNRTG | 4 cut(s) | 36, 207, 434, 450 |
| SacI | GAGCTC | 1 cut(s) | 782 |
| SaqAI | TTAA | 2 cut(s) | 633, 641 |
| SatI | GCNGC | 7 cut(s) | 12, 21, 42, 58, 66, 77, 399 |
| Sau3AI | GATC | 2 cut(s) | 115, 663 |
| SchI | GAGTC | 4 cut(s) | 160, 433, 533, 685 |
| ScrFI | CCNGG | 1 cut(s) | 350 |
| SduI | GDGCHC | 1 cut(s) | 782 |
| SetI | ASST | 8 cut(s) | 231, 284, 376, 382, 558, 772, 782, 792 |
| SfaNI | GCATC | 1 cut(s) | 313 |
| SfcI | CTRYAG | 2 cut(s) | 18, 55 |
| Sfr274I | CTCGAG | 1 cut(s) | 338 |
| SlaI | CTCGAG | 1 cut(s) | 338 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 36, 207, 434, 450 |
| SmlI | CTYRAG | 3 cut(s) | 308, 338, 375 |
| SmoI | CTYRAG | 3 cut(s) | 308, 338, 375 |
| SphI | GCATGC | 3 cut(s) | 72, 101, 200 |
| Sse9I | AATT | 2 cut(s) | 236, 647 |
| SsiI | CCGC | 5 cut(s) | 66, 182, 298, 398, 580 |
| SspMI | CTAG | 2 cut(s) | 345, 557 |
| SstI | GAGCTC | 1 cut(s) | 782 |
| StyD4I | CCNGG | 1 cut(s) | 348 |
| TaaI | ACNGT | 1 cut(s) | 364 |
| TaqI | TCGA | 5 cut(s) | 177, 339, 513, 739, 744 |
| TasI | AATT | 2 cut(s) | 236, 647 |
| TatI | WGTACW | 1 cut(s) | 167 |
| TauI | GCSGC | 2 cut(s) | 68, 401 |
| TfiI | GAWTC | 4 cut(s) | 334, 455, 741, 761 |
| Tru1I | TTAA | 2 cut(s) | 633, 641 |
| Tru9I | TTAA | 2 cut(s) | 633, 641 |
| TseFI | GTSAC | 1 cut(s) | 536 |
| TseI | GCWGC | 5 cut(s) | 11, 20, 41, 57, 76 |
| Tsp45I | GTSAC | 1 cut(s) | 536 |
| TspDTI | ATGAA | 4 cut(s) | 333, 491, 495, 763 |
| TspGWI | ACGGA | 1 cut(s) | 524 |
| XapI | RAATTY | 1 cut(s) | 647 |
| XceI | RCATGY | 5 cut(s) | 72, 101, 168, 200, 358 |
| XhoI | CTCGAG | 1 cut(s) | 338 |
| XmnI | GAANNNNTTC | 1 cut(s) | 624 |
| XspI | CTAG | 2 cut(s) | 345, 557 |