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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 522, 567 |
| AccB1I | GGYRCC | 2 cut(s) | 118, 767 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 737 |
| AcvI | CACGTG | 1 cut(s) | 689 |
| AcyI | GRCGYC | 2 cut(s) | 187, 768 |
| AfaI | GTAC | 2 cut(s) | 218, 462 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 61, 737 |
| AflIII | ACRYGT | 1 cut(s) | 686 |
| AgsI | TTSAA | 4 cut(s) | 39, 304, 311, 340 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 340, 407 |
| AjiI | CACGTC | 1 cut(s) | 737 |
| AjnI | CCWGG | 1 cut(s) | 730 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 252, 284 |
| AleI | CACNNNNGTG | 1 cut(s) | 509 |
| AluBI | AGCT | 7 cut(s) | 16, 133, 368, 424, 488, 728, 746 |
| AluI | AGCT | 7 cut(s) | 16, 133, 368, 424, 488, 728, 746 |
| Alw21I | GWGCWC | 2 cut(s) | 135, 730 |
| Alw26I | GTCTC | 2 cut(s) | 178, 460 |
| AoxI | GGCC | 3 cut(s) | 647, 718, 754 |
| ApeKI | GCWGC | 1 cut(s) | 746 |
| AspLEI | GCGC | 2 cut(s) | 591, 770 |
| AspS9I | GGNCC | 2 cut(s) | 635, 718 |
| AsuII | TTCGAA | 1 cut(s) | 92 |
| AvaII | GGWCC | 1 cut(s) | 635 |
| BanI | GGYRCC | 2 cut(s) | 118, 767 |
| BanII | GRGCYC | 2 cut(s) | 135, 730 |
| BbrPI | CACGTG | 1 cut(s) | 689 |
| Bbv12I | GWGCWC | 2 cut(s) | 135, 730 |
| BbvI | GCAGC | 1 cut(s) | 733 |
| BccI | CCATC | 2 cut(s) | 90, 675 |
| BceAI | ACGGC | 2 cut(s) | 705, 741 |
| BciT130I | CCWGG | 1 cut(s) | 732 |
| BciVI | GTATCC | 1 cut(s) | 481 |
| BcoDI | GTCTC | 2 cut(s) | 178, 460 |
| BfaI | CTAG | 2 cut(s) | 237, 257 |
| BfoI | RGCGCY | 1 cut(s) | 771 |
| BfuI | GTATCC | 1 cut(s) | 481 |
| BisI | GCNGC | 1 cut(s) | 747 |
| BlsI | GCNGC | 1 cut(s) | 748 |
| BmcAI | AGTACT | 1 cut(s) | 462 |
| Bme1390I | CCNGG | 1 cut(s) | 732 |
| Bme18I | GGWCC | 1 cut(s) | 635 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 340, 407 |
| BmgBI | CACGTC | 1 cut(s) | 737 |
| BmgT120I | GGNCC | 2 cut(s) | 635, 718 |
| BmiI | GGNNCC | 3 cut(s) | 120, 719, 769 |
| BmrFI | CCNGG | 1 cut(s) | 732 |
| BmsI | GCATC | 1 cut(s) | 223 |
| BpmI | CTGGAG | 1 cut(s) | 714 |
| Bpu10I | CCTNAGC | 1 cut(s) | 129 |
| Bpu14I | TTCGAA | 1 cut(s) | 92 |
| BpuEI | CTTGAG | 1 cut(s) | 735 |
| BsaAI | YACGTR | 1 cut(s) | 689 |
| BsaHI | GRCGYC | 2 cut(s) | 187, 768 |
| BsaJI | CCNNGG | 2 cut(s) | 721, 757 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 61, 737 |
| Bse118I | RCCGGY | 1 cut(s) | 645 |
| Bse1I | ACTGG | 1 cut(s) | 46 |
| BseBI | CCWGG | 1 cut(s) | 732 |
| BseDI | CCNNGG | 2 cut(s) | 721, 757 |
| BseGI | GGATG | 1 cut(s) | 238 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 61, 737 |
| BseMII | CTCAG | 3 cut(s) | 60, 120, 471 |
| BseNI | ACTGG | 1 cut(s) | 46 |
| BseRI | GAGGAG | 2 cut(s) | 281, 756 |
| BseXI | GCAGC | 1 cut(s) | 733 |
| BshFI | GGCC | 3 cut(s) | 649, 720, 756 |
| BshNI | GGYRCC | 2 cut(s) | 118, 767 |
| BsiHKAI | GWGCWC | 2 cut(s) | 135, 730 |
| BsiSI | CCGG | 1 cut(s) | 646 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 61, 737 |
| BsmAI | GTCTC | 2 cut(s) | 178, 460 |
| BsmBI | CGTCTC | 2 cut(s) | 178, 460 |
| BsnI | GGCC | 3 cut(s) | 649, 720, 756 |
| Bsp119I | TTCGAA | 1 cut(s) | 92 |
| Bsp1286I | GDGCHC | 2 cut(s) | 135, 730 |
| Bsp143I | GATC | 1 cut(s) | 225 |
| BspANI | GGCC | 3 cut(s) | 649, 720, 756 |
| BspCNI | CTCAG | 3 cut(s) | 59, 121, 470 |
| BspLI | GGNNCC | 3 cut(s) | 120, 719, 769 |
| BspQI | GCTCTTC | 1 cut(s) | 255 |
| BspT104I | TTCGAA | 1 cut(s) | 92 |
| BspT107I | GGYRCC | 2 cut(s) | 118, 767 |
| BsrFI | RCCGGY | 1 cut(s) | 645 |
| BsrI | ACTGG | 1 cut(s) | 46 |
| BssAI | RCCGGY | 1 cut(s) | 645 |
| BssECI | CCNNGG | 2 cut(s) | 721, 757 |
| BssMI | GATC | 1 cut(s) | 225 |
| BssNI | GRCGYC | 2 cut(s) | 187, 768 |
| Bst2UI | CCWGG | 1 cut(s) | 732 |
| Bst4CI | ACNGT | 1 cut(s) | 59 |
| Bst6I | CTCTTC | 1 cut(s) | 255 |
| BstACI | GRCGYC | 2 cut(s) | 187, 768 |
| BstBAI | YACGTR | 1 cut(s) | 689 |
| BstBI | TTCGAA | 1 cut(s) | 92 |
| BstDEI | CTNAG | 4 cut(s) | 46, 129, 457, 543 |
| BstDSI | CCRYGG | 2 cut(s) | 721, 757 |
| BstEII | GGTNACC | 1 cut(s) | 662 |
| BstF5I | GGATG | 1 cut(s) | 238 |
| BstH2I | RGCGCY | 1 cut(s) | 771 |
| BstHHI | GCGC | 2 cut(s) | 591, 770 |
| BstKTI | GATC | 1 cut(s) | 228 |
| BstMAI | GTCTC | 2 cut(s) | 178, 460 |
| BstMBI | GATC | 1 cut(s) | 225 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 595 |
| BstNI | CCWGG | 1 cut(s) | 732 |
| BstPI | GGTNACC | 1 cut(s) | 662 |
| BstSCI | CCNGG | 1 cut(s) | 730 |
| BstV1I | GCAGC | 1 cut(s) | 733 |
| BsuI | GTATCC | 1 cut(s) | 481 |
| BsuRI | GGCC | 3 cut(s) | 649, 720, 756 |
| BtgI | CCRYGG | 2 cut(s) | 721, 757 |
| BtrI | CACGTC | 1 cut(s) | 737 |
| BtsCI | GGATG | 1 cut(s) | 238 |
| BtsI | GCAGTG | 1 cut(s) | 165 |
| BtsIMutI | CAGTG | 2 cut(s) | 165, 330 |
| CfoI | GCGC | 2 cut(s) | 591, 770 |
| Cfr10I | RCCGGY | 1 cut(s) | 645 |
| Cfr13I | GGNCC | 2 cut(s) | 635, 718 |
| CseI | GACGC | 1 cut(s) | 195 |
| Csp6I | GTAC | 2 cut(s) | 217, 461 |
| CviAII | CATG | 6 cut(s) | 28, 193, 220, 385, 497, 699 |
| CviQI | GTAC | 2 cut(s) | 217, 461 |
| DdeI | CTNAG | 4 cut(s) | 46, 129, 457, 543 |
| DinI | GGCGCC | 1 cut(s) | 769 |
| DpnI | GATC | 1 cut(s) | 227 |
| DpnII | GATC | 1 cut(s) | 225 |
| DriI | GACNNNNNGTC | 2 cut(s) | 340, 407 |
| Eam1104I | CTCTTC | 1 cut(s) | 255 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 340, 407 |
| EarI | CTCTTC | 1 cut(s) | 255 |
| Ecl136II | GAGCTC | 2 cut(s) | 133, 728 |
| Eco24I | GRGCYC | 2 cut(s) | 135, 730 |
| Eco47I | GGWCC | 1 cut(s) | 635 |
| Eco53kI | GAGCTC | 2 cut(s) | 133, 728 |
| Eco72I | CACGTG | 1 cut(s) | 689 |
| Eco91I | GGTNACC | 1 cut(s) | 662 |
| EcoICRI | GAGCTC | 2 cut(s) | 133, 728 |
| EcoO65I | GGTNACC | 1 cut(s) | 662 |
| EcoRII | CCWGG | 1 cut(s) | 730 |
| EcoT38I | GRGCYC | 2 cut(s) | 135, 730 |
| EgeI | GGCGCC | 1 cut(s) | 769 |
| EheI | GGCGCC | 1 cut(s) | 769 |
| Esp3I | CGTCTC | 2 cut(s) | 178, 460 |
| FaeI | CATG | 6 cut(s) | 31, 196, 223, 388, 500, 702 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 37 |
| FatI | CATG | 6 cut(s) | 27, 192, 219, 384, 496, 698 |
| Fnu4HI | GCNGC | 1 cut(s) | 747 |
| FokI | GGATG | 1 cut(s) | 245 |
| FriOI | GRGCYC | 2 cut(s) | 135, 730 |
| Fsp4HI | GCNGC | 1 cut(s) | 747 |
| FspBI | CTAG | 2 cut(s) | 237, 257 |
| GlaI | GCGC | 2 cut(s) | 590, 769 |
| GluI | GCNGC | 1 cut(s) | 747 |
| GsuI | CTGGAG | 1 cut(s) | 714 |
| HaeII | RGCGCY | 1 cut(s) | 771 |
| HaeIII | GGCC | 3 cut(s) | 649, 720, 756 |
| HapII | CCGG | 1 cut(s) | 646 |
| HgaI | GACGC | 1 cut(s) | 195 |
| HhaI | GCGC | 2 cut(s) | 591, 770 |
| Hin1I | GRCGYC | 2 cut(s) | 187, 768 |
| Hin1II | CATG | 6 cut(s) | 31, 196, 223, 388, 500, 702 |
| Hin6I | GCGC | 2 cut(s) | 589, 768 |
| HinP1I | GCGC | 2 cut(s) | 589, 768 |
| HinfI | GANTC | 3 cut(s) | 35, 284, 327 |
| HpaII | CCGG | 1 cut(s) | 646 |
| Hpy166II | GTNNAC | 1 cut(s) | 553 |
| Hpy188I | TCNGA | 5 cut(s) | 49, 209, 352, 364, 672 |
| Hpy188III | TCNNGA | 2 cut(s) | 178, 780 |
| Hpy8I | GTNNAC | 1 cut(s) | 553 |
| HpyAV | CCTTC | 5 cut(s) | 298, 457, 653, 671, 708 |
| HpyCH4III | ACNGT | 1 cut(s) | 59 |
| HpyCH4IV | ACGT | 3 cut(s) | 688, 706, 736 |
| HpyCH4V | TGCA | 2 cut(s) | 254, 575 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 595 |
| HpyF3I | CTNAG | 4 cut(s) | 46, 129, 457, 543 |
| HpySE526I | ACGT | 3 cut(s) | 688, 706, 736 |
| Hsp92I | GRCGYC | 2 cut(s) | 187, 768 |
| Hsp92II | CATG | 6 cut(s) | 31, 196, 223, 388, 500, 702 |
| HspAI | GCGC | 2 cut(s) | 589, 768 |
| KasI | GGCGCC | 1 cut(s) | 767 |
| Kzo9I | GATC | 1 cut(s) | 225 |
| LguI | GCTCTTC | 1 cut(s) | 255 |
| LmnI | GCTCC | 5 cut(s) | 315, 373, 725, 733, 743 |
| LpnPI | CCDG | 9 cut(s) | 27, 101, 141, 214, 309, 420, 659, 717, 744 |
| Lsp1109I | GCAGC | 1 cut(s) | 733 |
| LweI | GCATC | 1 cut(s) | 223 |
| MaeI | CTAG | 2 cut(s) | 237, 257 |
| MaeII | ACGT | 3 cut(s) | 688, 706, 736 |
| MaeIII | GTNAC | 4 cut(s) | 64, 409, 662, 692 |
| MalI | GATC | 1 cut(s) | 227 |
| MboI | GATC | 1 cut(s) | 225 |
| MboII | GAAGA | 3 cut(s) | 272, 526, 768 |
| MhlI | GDGCHC | 2 cut(s) | 135, 730 |
| MluCI | AATT | 4 cut(s) | 426, 517, 523, 562 |
| Mly113I | GGCGCC | 1 cut(s) | 768 |
| MnlI | CCTC | 7 cut(s) | 182, 299, 302, 358, 386, 578, 734 |
| MseI | TTAA | 2 cut(s) | 527, 612 |
| MslI | CAYNNNNRTG | 3 cut(s) | 179, 509, 672 |
| MspI | CCGG | 1 cut(s) | 646 |
| MspR9I | CCNGG | 1 cut(s) | 732 |
| MvaI | CCWGG | 1 cut(s) | 732 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 595 |
| NarI | GGCGCC | 1 cut(s) | 768 |
| NdeII | GATC | 1 cut(s) | 225 |
| NlaIII | CATG | 6 cut(s) | 31, 196, 223, 388, 500, 702 |
| NlaIV | GGNNCC | 3 cut(s) | 120, 719, 769 |
| NmuCI | GTSAC | 2 cut(s) | 64, 409 |
| NspV | TTCGAA | 1 cut(s) | 92 |
| OliI | CACNNNNGTG | 1 cut(s) | 509 |
| PciSI | GCTCTTC | 1 cut(s) | 255 |
| PfeI | GAWTC | 3 cut(s) | 35, 284, 327 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 737 |
| PfoI | TCCNGGA | 1 cut(s) | 730 |
| PkrI | GCNGC | 1 cut(s) | 748 |
| PluTI | GGCGCC | 1 cut(s) | 771 |
| PmaCI | CACGTG | 1 cut(s) | 689 |
| PmlI | CACGTG | 1 cut(s) | 689 |
| Ppu21I | YACGTR | 1 cut(s) | 689 |
| PsiI | TTATAA | 2 cut(s) | 522, 567 |
| Psp124BI | GAGCTC | 2 cut(s) | 135, 730 |
| Psp6I | CCWGG | 1 cut(s) | 730 |
| PspCI | CACGTG | 1 cut(s) | 689 |
| PspEI | GGTNACC | 1 cut(s) | 662 |
| PspGI | CCWGG | 1 cut(s) | 730 |
| PspN4I | GGNNCC | 3 cut(s) | 120, 719, 769 |
| PspPI | GGNCC | 2 cut(s) | 635, 718 |
| RsaI | GTAC | 2 cut(s) | 218, 462 |
| RsaNI | GTAC | 2 cut(s) | 217, 461 |
| RseI | CAYNNNNRTG | 3 cut(s) | 179, 509, 672 |
| SacI | GAGCTC | 2 cut(s) | 135, 730 |
| SapI | GCTCTTC | 1 cut(s) | 255 |
| SaqAI | TTAA | 2 cut(s) | 527, 612 |
| SatI | GCNGC | 1 cut(s) | 747 |
| Sau3AI | GATC | 1 cut(s) | 225 |
| Sau96I | GGNCC | 2 cut(s) | 635, 718 |
| ScaI | AGTACT | 1 cut(s) | 462 |
| ScrFI | CCNGG | 1 cut(s) | 732 |
| SduI | GDGCHC | 2 cut(s) | 135, 730 |
| SfaNI | GCATC | 1 cut(s) | 223 |
| SfoI | GGCGCC | 1 cut(s) | 769 |
| SfuI | TTCGAA | 1 cut(s) | 92 |
| SinI | GGWCC | 1 cut(s) | 635 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 179, 509, 672 |
| SmlI | CTYRAG | 1 cut(s) | 750 |
| SmoI | CTYRAG | 1 cut(s) | 750 |
| Sse9I | AATT | 4 cut(s) | 426, 517, 523, 562 |
| SspDI | GGCGCC | 1 cut(s) | 767 |
| SspMI | CTAG | 2 cut(s) | 237, 257 |
| SstI | GAGCTC | 2 cut(s) | 135, 730 |
| StyD4I | CCNGG | 1 cut(s) | 730 |
| TaaI | ACNGT | 1 cut(s) | 59 |
| TaiI | ACGT | 3 cut(s) | 691, 709, 739 |
| TaqI | TCGA | 3 cut(s) | 5, 18, 92 |
| TasI | AATT | 4 cut(s) | 426, 517, 523, 562 |
| TatI | WGTACW | 2 cut(s) | 216, 460 |
| TfiI | GAWTC | 3 cut(s) | 35, 284, 327 |
| Tru1I | TTAA | 2 cut(s) | 527, 612 |
| Tru9I | TTAA | 2 cut(s) | 527, 612 |
| TscAI | CASTG | 2 cut(s) | 172, 337 |
| TseFI | GTSAC | 2 cut(s) | 64, 409 |
| TseI | GCWGC | 1 cut(s) | 746 |
| Tsp45I | GTSAC | 2 cut(s) | 64, 409 |
| TspDTI | ATGAA | 1 cut(s) | 690 |
| TspGWI | ACGGA | 1 cut(s) | 697 |
| TspRI | CASTG | 2 cut(s) | 172, 337 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 737 |
| VpaK11BI | GGWCC | 1 cut(s) | 635 |
| XspI | CTAG | 2 cut(s) | 237, 257 |
| ZrmI | AGTACT | 1 cut(s) | 462 |