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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 30 |
| AccB1I | GGYRCC | 2 cut(s) | 723, 881 |
| AccIII | TCCGGA | 1 cut(s) | 688 |
| AciI | CCGC | 4 cut(s) | 400, 706, 802, 1023 |
| AclWI | GGATC | 4 cut(s) | 264, 295, 590, 764 |
| AcoI | YGGCCR | 1 cut(s) | 868 |
| AcsI | RAATTY | 2 cut(s) | 199, 467 |
| AcuI | CTGAAG | 1 cut(s) | 249 |
| AcyI | GRCGYC | 1 cut(s) | 882 |
| AdeI | CACNNNGTG | 1 cut(s) | 1063 |
| AfaI | GTAC | 1 cut(s) | 8 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 719 |
| AgsI | TTSAA | 3 cut(s) | 205, 415, 919 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 327, 359 |
| AleI | CACNNNNGTG | 1 cut(s) | 36 |
| AluBI | AGCT | 5 cut(s) | 233, 601, 611, 1004, 1055 |
| AluI | AGCT | 5 cut(s) | 233, 601, 611, 1004, 1055 |
| Alw21I | GWGCWC | 2 cut(s) | 603, 1006 |
| Alw26I | GTCTC | 1 cut(s) | 331 |
| AlwI | GGATC | 4 cut(s) | 264, 295, 590, 764 |
| Aor13HI | TCCGGA | 1 cut(s) | 688 |
| AoxI | GGCC | 1 cut(s) | 868 |
| ApeKI | GCWGC | 8 cut(s) | 11, 20, 41, 57, 76, 86, 94, 121 |
| ApoI | RAATTY | 2 cut(s) | 199, 467 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 444 |
| AspA2I | CCTAGG | 1 cut(s) | 221 |
| AspLEI | GCGC | 2 cut(s) | 31, 884 |
| AspS9I | GGNCC | 1 cut(s) | 152 |
| AsuHPI | GGTGA | 1 cut(s) | 1012 |
| AvaII | GGWCC | 1 cut(s) | 152 |
| AvrII | CCTAGG | 1 cut(s) | 221 |
| BaeGI | GKGCMC | 1 cut(s) | 991 |
| BalI | TGGCCA | 1 cut(s) | 870 |
| BanI | GGYRCC | 2 cut(s) | 723, 881 |
| BanII | GRGCYC | 2 cut(s) | 603, 1006 |
| BauI | CACGAG | 1 cut(s) | 1005 |
| BbsI | GAAGAC | 1 cut(s) | 515 |
| Bbv12I | GWGCWC | 2 cut(s) | 603, 1006 |
| BbvI | GCAGC | 7 cut(s) | 28, 32, 63, 69, 98, 106, 108 |
| BccI | CCATC | 5 cut(s) | 381, 535, 536, 573, 909 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 83, 117, 554, 588 |
| BciVI | GTATCC | 1 cut(s) | 745 |
| BclI | TGATCA | 1 cut(s) | 159 |
| BcoDI | GTCTC | 1 cut(s) | 331 |
| BfaI | CTAG | 3 cut(s) | 222, 377, 1091 |
| BfmI | CTRYAG | 4 cut(s) | 18, 55, 84, 92 |
| BfoI | RGCGCY | 1 cut(s) | 885 |
| BfuI | GTATCC | 1 cut(s) | 745 |
| BisI | GCNGC | 9 cut(s) | 12, 21, 42, 58, 77, 87, 95, 122, 706 |
| BlnI | CCTAGG | 1 cut(s) | 221 |
| BlsI | GCNGC | 9 cut(s) | 13, 22, 43, 59, 78, 88, 96, 123, 707 |
| Bme18I | GGWCC | 1 cut(s) | 152 |
| BmgT120I | GGNCC | 1 cut(s) | 152 |
| BmiI | GGNNCC | 4 cut(s) | 153, 725, 824, 883 |
| BmsI | GCATC | 1 cut(s) | 481 |
| BpiI | GAAGAC | 1 cut(s) | 515 |
| Bsa29I | ATCGAT | 1 cut(s) | 564 |
| BsaBI | GATNNNNATC | 1 cut(s) | 164 |
| BsaHI | GRCGYC | 1 cut(s) | 882 |
| BsaI | GGTCTC | 1 cut(s) | 331 |
| BsaJI | CCNNGG | 1 cut(s) | 221 |
| BsaWI | WCCGGW | 1 cut(s) | 688 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 719 |
| Bse3DI | GCAATG | 1 cut(s) | 60 |
| Bse8I | GATNNNNATC | 1 cut(s) | 164 |
| BseAI | TCCGGA | 1 cut(s) | 688 |
| BseCI | ATCGAT | 1 cut(s) | 564 |
| BseDI | CCNNGG | 1 cut(s) | 221 |
| BseJI | GATNNNNATC | 1 cut(s) | 164 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 719 |
| BseMI | GCAATG | 1 cut(s) | 60 |
| BseMII | CTCAG | 2 cut(s) | 450, 969 |
| BseSI | GKGCMC | 1 cut(s) | 991 |
| BseXI | GCAGC | 7 cut(s) | 28, 32, 63, 69, 98, 106, 108 |
| BsgI | GTGCAG | 1 cut(s) | 132 |
| BshFI | GGCC | 1 cut(s) | 870 |
| BshNI | GGYRCC | 2 cut(s) | 723, 881 |
| BshVI | ATCGAT | 1 cut(s) | 564 |
| BsiHKAI | GWGCWC | 2 cut(s) | 603, 1006 |
| BsiSI | CCGG | 1 cut(s) | 689 |
| BsiWI | CGTACG | 1 cut(s) | 6 |
| BslFI | GGGAC | 1 cut(s) | 165 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 719 |
| BsmAI | GTCTC | 1 cut(s) | 331 |
| BsmFI | GGGAC | 1 cut(s) | 165 |
| BsnI | GGCC | 1 cut(s) | 870 |
| Bso31I | GGTCTC | 1 cut(s) | 331 |
| Bsp1286I | GDGCHC | 3 cut(s) | 603, 991, 1006 |
| Bsp13I | TCCGGA | 1 cut(s) | 688 |
| Bsp143I | GATC | 9 cut(s) | 159, 256, 287, 483, 582, 665, 769, 1075, 1087 |
| BspACI | CCGC | 4 cut(s) | 400, 706, 802, 1023 |
| BspANI | GGCC | 1 cut(s) | 870 |
| BspCNI | CTCAG | 2 cut(s) | 449, 970 |
| BspDI | ATCGAT | 1 cut(s) | 564 |
| BspEI | TCCGGA | 1 cut(s) | 688 |
| BspHI | TCATGA | 1 cut(s) | 595 |
| BspLI | GGNNCC | 4 cut(s) | 153, 725, 824, 883 |
| BspMAI | CTGCAG | 4 cut(s) | 22, 59, 88, 96 |
| BspPI | GGATC | 4 cut(s) | 264, 295, 590, 764 |
| BspT107I | GGYRCC | 2 cut(s) | 723, 881 |
| BspTNI | GGTCTC | 1 cut(s) | 331 |
| BsrDI | GCAATG | 1 cut(s) | 60 |
| BssECI | CCNNGG | 1 cut(s) | 221 |
| BssMI | GATC | 9 cut(s) | 159, 256, 287, 483, 582, 665, 769, 1075, 1087 |
| BssNI | GRCGYC | 1 cut(s) | 882 |
| BssSI | CACGAG | 1 cut(s) | 1005 |
| BssT1I | CCWWGG | 1 cut(s) | 221 |
| Bst2BI | CACGAG | 1 cut(s) | 1005 |
| Bst4CI | ACNGT | 1 cut(s) | 421 |
| Bst6I | CTCTTC | 1 cut(s) | 823 |
| BstACI | GRCGYC | 1 cut(s) | 882 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 26 |
| BstC8I | GCNNGC | 3 cut(s) | 74, 126, 130 |
| BstDEI | CTNAG | 6 cut(s) | 309, 436, 549, 714, 746, 978 |
| BstEII | GGTNACC | 1 cut(s) | 797 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 717 |
| BstH2I | RGCGCY | 1 cut(s) | 885 |
| BstHHI | GCGC | 2 cut(s) | 31, 884 |
| BstKTI | GATC | 9 cut(s) | 162, 259, 290, 486, 585, 668, 772, 1078, 1090 |
| BstMAI | GTCTC | 1 cut(s) | 331 |
| BstMBI | GATC | 9 cut(s) | 159, 256, 287, 483, 582, 665, 769, 1075, 1087 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 17, 20, 26, 57, 1031, 1052 |
| BstPI | GGTNACC | 1 cut(s) | 797 |
| BstSFI | CTRYAG | 4 cut(s) | 18, 55, 84, 92 |
| BstSLI | GKGCMC | 1 cut(s) | 991 |
| BstV1I | GCAGC | 7 cut(s) | 28, 32, 63, 69, 98, 106, 108 |
| BstV2I | GAAGAC | 1 cut(s) | 515 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 878 |
| Bsu15I | ATCGAT | 1 cut(s) | 564 |
| BsuI | GTATCC | 1 cut(s) | 745 |
| BsuRI | GGCC | 1 cut(s) | 870 |
| BsuTUI | ATCGAT | 1 cut(s) | 564 |
| BtgZI | GCGATG | 1 cut(s) | 509 |
| BtsI | GCAGTG | 1 cut(s) | 89 |
| BtsIMutI | CAGTG | 1 cut(s) | 89 |
| Cac8I | GCNNGC | 3 cut(s) | 74, 126, 130 |
| CciI | TCATGA | 1 cut(s) | 595 |
| CfoI | GCGC | 2 cut(s) | 31, 884 |
| Cfr13I | GGNCC | 1 cut(s) | 152 |
| ClaI | ATCGAT | 1 cut(s) | 564 |
| CseI | GACGC | 1 cut(s) | 920 |
| Csp6I | GTAC | 1 cut(s) | 7 |
| CviAII | CATG | 3 cut(s) | 596, 632, 872 |
| CviQI | GTAC | 1 cut(s) | 7 |
| DdeI | CTNAG | 6 cut(s) | 309, 436, 549, 714, 746, 978 |
| DinI | GGCGCC | 1 cut(s) | 883 |
| DpnI | GATC | 9 cut(s) | 161, 258, 289, 485, 584, 667, 771, 1077, 1089 |
| DpnII | GATC | 9 cut(s) | 159, 256, 287, 483, 582, 665, 769, 1075, 1087 |
| DraIII | CACNNNGTG | 1 cut(s) | 1063 |
| EaeI | YGGCCR | 1 cut(s) | 868 |
| Eam1104I | CTCTTC | 1 cut(s) | 823 |
| EarI | CTCTTC | 1 cut(s) | 823 |
| Ecl136II | GAGCTC | 2 cut(s) | 601, 1004 |
| Eco130I | CCWWGG | 1 cut(s) | 221 |
| Eco24I | GRGCYC | 2 cut(s) | 603, 1006 |
| Eco31I | GGTCTC | 1 cut(s) | 331 |
| Eco47I | GGWCC | 1 cut(s) | 152 |
| Eco53kI | GAGCTC | 2 cut(s) | 601, 1004 |
| Eco57I | CTGAAG | 1 cut(s) | 249 |
| Eco91I | GGTNACC | 1 cut(s) | 797 |
| EcoICRI | GAGCTC | 2 cut(s) | 601, 1004 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 717 |
| EcoO109I | RGGNCCY | 1 cut(s) | 152 |
| EcoO65I | GGTNACC | 1 cut(s) | 797 |
| EcoRI | GAATTC | 1 cut(s) | 467 |
| EcoT14I | CCWWGG | 1 cut(s) | 221 |
| EcoT38I | GRGCYC | 2 cut(s) | 603, 1006 |
| EgeI | GGCGCC | 1 cut(s) | 883 |
| EheI | GGCGCC | 1 cut(s) | 883 |
| ErhI | CCWWGG | 1 cut(s) | 221 |
| FaeI | CATG | 3 cut(s) | 599, 635, 875 |
| FaqI | GGGAC | 1 cut(s) | 165 |
| FatI | CATG | 3 cut(s) | 595, 631, 871 |
| FbaI | TGATCA | 1 cut(s) | 159 |
| Fnu4HI | GCNGC | 9 cut(s) | 12, 21, 42, 58, 77, 87, 95, 122, 706 |
| FriOI | GRGCYC | 2 cut(s) | 603, 1006 |
| Fsp4HI | GCNGC | 9 cut(s) | 12, 21, 42, 58, 77, 87, 95, 122, 706 |
| FspBI | CTAG | 3 cut(s) | 222, 377, 1091 |
| FspI | TGCGCA | 1 cut(s) | 30 |
| GlaI | GCGC | 2 cut(s) | 30, 883 |
| GluI | GCNGC | 9 cut(s) | 12, 21, 42, 58, 77, 87, 95, 122, 706 |
| HaeII | RGCGCY | 1 cut(s) | 885 |
| HaeIII | GGCC | 1 cut(s) | 870 |
| HapII | CCGG | 1 cut(s) | 689 |
| HgaI | GACGC | 1 cut(s) | 920 |
| HhaI | GCGC | 2 cut(s) | 31, 884 |
| Hin1I | GRCGYC | 1 cut(s) | 882 |
| Hin1II | CATG | 3 cut(s) | 599, 635, 875 |
| Hin6I | GCGC | 2 cut(s) | 29, 882 |
| HinP1I | GCGC | 2 cut(s) | 29, 882 |
| HinfI | GANTC | 6 cut(s) | 188, 215, 359, 511, 561, 692 |
| HpaII | CCGG | 1 cut(s) | 689 |
| HphI | GGTGA | 1 cut(s) | 1012 |
| Hpy166II | GTNNAC | 1 cut(s) | 836 |
| Hpy188I | TCNGA | 4 cut(s) | 159, 198, 439, 979 |
| Hpy8I | GTNNAC | 1 cut(s) | 836 |
| HpyAV | CCTTC | 3 cut(s) | 309, 532, 788 |
| HpyCH4III | ACNGT | 1 cut(s) | 421 |
| HpyCH4IV | ACGT | 2 cut(s) | 351, 838 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 17, 20, 26, 57, 1031, 1052 |
| HpyF3I | CTNAG | 6 cut(s) | 309, 436, 549, 714, 746, 978 |
| HpySE526I | ACGT | 2 cut(s) | 351, 838 |
| Hsp92I | GRCGYC | 1 cut(s) | 882 |
| Hsp92II | CATG | 3 cut(s) | 599, 635, 875 |
| HspAI | GCGC | 2 cut(s) | 29, 882 |
| KasI | GGCGCC | 1 cut(s) | 881 |
| Kpn2I | TCCGGA | 1 cut(s) | 688 |
| Ksp22I | TGATCA | 1 cut(s) | 159 |
| Kzo9I | GATC | 9 cut(s) | 159, 256, 287, 483, 582, 665, 769, 1075, 1087 |
| LmnI | GCTCC | 2 cut(s) | 199, 608 |
| Lsp1109I | GCAGC | 7 cut(s) | 28, 32, 63, 69, 98, 106, 108 |
| LweI | GCATC | 1 cut(s) | 481 |
| MaeI | CTAG | 3 cut(s) | 222, 377, 1091 |
| MaeII | ACGT | 2 cut(s) | 351, 838 |
| MaeIII | GTNAC | 3 cut(s) | 356, 797, 1018 |
| MalI | GATC | 9 cut(s) | 161, 258, 289, 485, 584, 667, 771, 1077, 1089 |
| MboI | GATC | 9 cut(s) | 159, 256, 287, 483, 582, 665, 769, 1075, 1087 |
| MboII | GAAGA | 8 cut(s) | 165, 347, 520, 661, 840, 1022, 1085, 1094 |
| MhlI | GDGCHC | 3 cut(s) | 603, 991, 1006 |
| MlsI | TGGCCA | 1 cut(s) | 870 |
| MluCI | AATT | 4 cut(s) | 199, 467, 658, 697 |
| MluNI | TGGCCA | 1 cut(s) | 870 |
| Mly113I | GGCGCC | 1 cut(s) | 882 |
| MlyI | GAGTC | 2 cut(s) | 353, 505 |
| Mox20I | TGGCCA | 1 cut(s) | 870 |
| MroI | TCCGGA | 1 cut(s) | 688 |
| MroXI | GAANNNNTTC | 1 cut(s) | 444 |
| MscI | TGGCCA | 1 cut(s) | 870 |
| MseI | TTAA | 3 cut(s) | 453, 461, 894 |
| MslI | CAYNNNNRTG | 2 cut(s) | 36, 906 |
| Msp20I | TGGCCA | 1 cut(s) | 870 |
| MspI | CCGG | 1 cut(s) | 689 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 17, 20, 26, 57, 1031, 1052 |
| NarI | GGCGCC | 1 cut(s) | 882 |
| NdeII | GATC | 9 cut(s) | 159, 256, 287, 483, 582, 665, 769, 1075, 1087 |
| NlaIII | CATG | 3 cut(s) | 599, 635, 875 |
| NlaIV | GGNNCC | 4 cut(s) | 153, 725, 824, 883 |
| NmuCI | GTSAC | 2 cut(s) | 356, 1018 |
| NsbI | TGCGCA | 1 cut(s) | 30 |
| OliI | CACNNNNGTG | 1 cut(s) | 36 |
| PagI | TCATGA | 1 cut(s) | 595 |
| PdmI | GAANNNNTTC | 1 cut(s) | 444 |
| PfeI | GAWTC | 4 cut(s) | 188, 215, 561, 692 |
| Pfl23II | CGTACG | 1 cut(s) | 6 |
| PkrI | GCNGC | 9 cut(s) | 13, 22, 43, 59, 78, 88, 96, 123, 707 |
| PleI | GAGTC | 2 cut(s) | 353, 505 |
| PluTI | GGCGCC | 1 cut(s) | 885 |
| PpsI | GAGTC | 2 cut(s) | 353, 505 |
| PpuMI | RGGWCCY | 1 cut(s) | 152 |
| Psp124BI | GAGCTC | 2 cut(s) | 603, 1006 |
| Psp5II | RGGWCCY | 1 cut(s) | 152 |
| PspEI | GGTNACC | 1 cut(s) | 797 |
| PspLI | CGTACG | 1 cut(s) | 6 |
| PspN4I | GGNNCC | 4 cut(s) | 153, 725, 824, 883 |
| PspPI | GGNCC | 1 cut(s) | 152 |
| PspPPI | RGGWCCY | 1 cut(s) | 152 |
| PstI | CTGCAG | 4 cut(s) | 22, 59, 88, 96 |
| RsaI | GTAC | 1 cut(s) | 8 |
| RsaNI | GTAC | 1 cut(s) | 7 |
| RseI | CAYNNNNRTG | 2 cut(s) | 36, 906 |
| SacI | GAGCTC | 2 cut(s) | 603, 1006 |
| SaqAI | TTAA | 3 cut(s) | 453, 461, 894 |
| SatI | GCNGC | 9 cut(s) | 12, 21, 42, 58, 77, 87, 95, 122, 706 |
| Sau3AI | GATC | 9 cut(s) | 159, 256, 287, 483, 582, 665, 769, 1075, 1087 |
| Sau96I | GGNCC | 1 cut(s) | 152 |
| SchI | GAGTC | 2 cut(s) | 353, 505 |
| SduI | GDGCHC | 3 cut(s) | 603, 991, 1006 |
| SfaNI | GCATC | 1 cut(s) | 481 |
| SfcI | CTRYAG | 4 cut(s) | 18, 55, 84, 92 |
| SfoI | GGCGCC | 1 cut(s) | 883 |
| SinI | GGWCC | 1 cut(s) | 152 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 36, 906 |
| Sse9I | AATT | 4 cut(s) | 199, 467, 658, 697 |
| SsiI | CCGC | 4 cut(s) | 400, 706, 802, 1023 |
| SspDI | GGCGCC | 1 cut(s) | 881 |
| SspMI | CTAG | 3 cut(s) | 222, 377, 1091 |
| SstI | GAGCTC | 2 cut(s) | 603, 1006 |
| StyI | CCWWGG | 1 cut(s) | 221 |
| TaaI | ACNGT | 1 cut(s) | 421 |
| TaiI | ACGT | 2 cut(s) | 354, 841 |
| TaqI | TCGA | 6 cut(s) | 259, 333, 564, 662, 942, 964 |
| TasI | AATT | 4 cut(s) | 199, 467, 658, 697 |
| TauI | GCSGC | 1 cut(s) | 708 |
| TfiI | GAWTC | 4 cut(s) | 188, 215, 561, 692 |
| Tru1I | TTAA | 3 cut(s) | 453, 461, 894 |
| Tru9I | TTAA | 3 cut(s) | 453, 461, 894 |
| TscAI | CASTG | 1 cut(s) | 96 |
| TseFI | GTSAC | 2 cut(s) | 356, 1018 |
| TseI | GCWGC | 8 cut(s) | 11, 20, 41, 57, 76, 86, 94, 121 |
| Tsp45I | GTSAC | 2 cut(s) | 356, 1018 |
| TspDTI | ATGAA | 3 cut(s) | 165, 584, 629 |
| TspGWI | ACGGA | 2 cut(s) | 344, 835 |
| TspRI | CASTG | 1 cut(s) | 96 |
| VpaK11BI | GGWCC | 1 cut(s) | 152 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 717 |
| XapI | RAATTY | 2 cut(s) | 199, 467 |
| XbaI | TCTAGA | 1 cut(s) | 1090 |
| XmaJI | CCTAGG | 1 cut(s) | 221 |
| XmnI | GAANNNNTTC | 1 cut(s) | 444 |
| XspI | CTAG | 3 cut(s) | 222, 377, 1091 |