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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 390, 435 |
| Acc65I | GGTACC | 1 cut(s) | 465 |
| AccB1I | GGYRCC | 3 cut(s) | 465, 611, 632 |
| AccII | CGCG | 1 cut(s) | 320 |
| AciI | CCGC | 3 cut(s) | 511, 655, 753 |
| AclWI | GGATC | 1 cut(s) | 323 |
| AcuI | CTGAAG | 2 cut(s) | 318, 686 |
| AcvI | CACGTG | 2 cut(s) | 554, 572 |
| AcyI | GRCGYC | 1 cut(s) | 612 |
| AdeI | CACNNNGTG | 1 cut(s) | 557 |
| AfaI | GTAC | 1 cut(s) | 467 |
| AfeI | AGCGCT | 2 cut(s) | 63, 74 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 198, 449, 450, 520, 573 |
| AflIII | ACRYGT | 3 cut(s) | 376, 551, 569 |
| AgsI | TTSAA | 4 cut(s) | 112, 119, 148, 824 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 215 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 60, 92 |
| AluBI | AGCT | 8 cut(s) | 52, 176, 334, 356, 664, 701, 730, 802 |
| AluI | AGCT | 8 cut(s) | 52, 176, 334, 356, 664, 701, 730, 802 |
| Alw21I | GWGCWC | 1 cut(s) | 732 |
| Alw26I | GTCTC | 1 cut(s) | 839 |
| AlwI | GGATC | 1 cut(s) | 323 |
| Aor51HI | AGCGCT | 2 cut(s) | 63, 74 |
| AoxI | GGCC | 2 cut(s) | 398, 499 |
| ApaI | GGGCCC | 2 cut(s) | 402, 503 |
| ApeKI | GCWGC | 1 cut(s) | 799 |
| AseI | ATTAAT | 1 cut(s) | 339 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 177 |
| Asp718I | GGTACC | 1 cut(s) | 465 |
| AspLEI | GCGC | 5 cut(s) | 64, 75, 135, 456, 614 |
| AspS9I | GGNCC | 4 cut(s) | 398, 399, 499, 500 |
| AsuHPI | GGTGA | 1 cut(s) | 817 |
| BaeGI | GKGCMC | 2 cut(s) | 402, 503 |
| BanI | GGYRCC | 3 cut(s) | 465, 611, 632 |
| BanII | GRGCYC | 3 cut(s) | 402, 503, 732 |
| BbrPI | CACGTG | 2 cut(s) | 554, 572 |
| BbsI | GAAGAC | 1 cut(s) | 721 |
| Bbv12I | GWGCWC | 1 cut(s) | 732 |
| BbvI | GCAGC | 1 cut(s) | 811 |
| BccI | CCATC | 2 cut(s) | 573, 703 |
| BceAI | ACGGC | 1 cut(s) | 585 |
| BciVI | GTATCC | 2 cut(s) | 541, 602 |
| BcoDI | GTCTC | 1 cut(s) | 839 |
| BfaI | CTAG | 4 cut(s) | 65, 597, 644, 675 |
| BfmI | CTRYAG | 1 cut(s) | 351 |
| BfoI | RGCGCY | 3 cut(s) | 65, 76, 615 |
| BfuI | GTATCC | 2 cut(s) | 541, 602 |
| BisI | GCNGC | 1 cut(s) | 800 |
| BlpI | GCTNAGC | 1 cut(s) | 702 |
| BlsI | GCNGC | 1 cut(s) | 801 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 215 |
| BmgT120I | GGNCC | 4 cut(s) | 398, 399, 499, 500 |
| BmiI | GGNNCC | 5 cut(s) | 400, 467, 501, 613, 634 |
| BpiI | GAAGAC | 1 cut(s) | 721 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 702 |
| BpuEI | CTTGAG | 2 cut(s) | 704, 821 |
| BsaAI | YACGTR | 2 cut(s) | 554, 572 |
| BsaHI | GRCGYC | 1 cut(s) | 612 |
| BsaI | GGTCTC | 1 cut(s) | 839 |
| BsaJI | CCNNGG | 1 cut(s) | 615 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 14, 44, 568, 598 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 198, 449, 450, 520, 573 |
| BseDI | CCNNGG | 1 cut(s) | 615 |
| BseGI | GGATG | 1 cut(s) | 730 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 198, 449, 450, 520, 573 |
| BseMII | CTCAG | 2 cut(s) | 28, 348 |
| BseRI | GAGGAG | 1 cut(s) | 89 |
| BseSI | GKGCMC | 2 cut(s) | 402, 503 |
| BseXI | GCAGC | 1 cut(s) | 811 |
| Bsh1236I | CGCG | 1 cut(s) | 320 |
| BshFI | GGCC | 2 cut(s) | 400, 501 |
| BshNI | GGYRCC | 3 cut(s) | 465, 611, 632 |
| BsiHKAI | GWGCWC | 1 cut(s) | 732 |
| BslFI | GGGAC | 2 cut(s) | 495, 504 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 198, 449, 450, 520, 573 |
| BsmAI | GTCTC | 1 cut(s) | 839 |
| BsmFI | GGGAC | 2 cut(s) | 495, 504 |
| BsmI | GAATGC | 1 cut(s) | 46 |
| BsnI | GGCC | 2 cut(s) | 400, 501 |
| Bso31I | GGTCTC | 1 cut(s) | 839 |
| Bsp120I | GGGCCC | 2 cut(s) | 398, 499 |
| Bsp1286I | GDGCHC | 3 cut(s) | 402, 503, 732 |
| Bsp143I | GATC | 2 cut(s) | 315, 867 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 702 |
| Bsp19I | CCATGG | 1 cut(s) | 615 |
| Bsp68I | TCGCGA | 1 cut(s) | 320 |
| BspACI | CCGC | 3 cut(s) | 511, 655, 753 |
| BspANI | GGCC | 2 cut(s) | 400, 501 |
| BspCNI | CTCAG | 2 cut(s) | 27, 349 |
| BspFNI | CGCG | 1 cut(s) | 320 |
| BspHI | TCATGA | 2 cut(s) | 421, 732 |
| BspLI | GGNNCC | 5 cut(s) | 400, 467, 501, 613, 634 |
| BspPI | GGATC | 1 cut(s) | 323 |
| BspQI | GCTCTTC | 2 cut(s) | 63, 183 |
| BspT107I | GGYRCC | 3 cut(s) | 465, 611, 632 |
| BspTNI | GGTCTC | 1 cut(s) | 839 |
| BssECI | CCNNGG | 1 cut(s) | 615 |
| BssMI | GATC | 2 cut(s) | 315, 867 |
| BssNI | GRCGYC | 1 cut(s) | 612 |
| BssT1I | CCWWGG | 1 cut(s) | 615 |
| Bst4CI | ACNGT | 2 cut(s) | 189, 533 |
| Bst6I | CTCTTC | 2 cut(s) | 63, 183 |
| BstACI | GRCGYC | 1 cut(s) | 612 |
| BstBAI | YACGTR | 2 cut(s) | 554, 572 |
| BstC8I | GCNNGC | 1 cut(s) | 655 |
| BstDEI | CTNAG | 4 cut(s) | 14, 357, 471, 702 |
| BstDSI | CCRYGG | 1 cut(s) | 615 |
| BstF5I | GGATG | 1 cut(s) | 730 |
| BstFNI | CGCG | 1 cut(s) | 320 |
| BstH2I | RGCGCY | 3 cut(s) | 65, 76, 615 |
| BstHHI | GCGC | 5 cut(s) | 64, 75, 135, 456, 614 |
| BstKTI | GATC | 2 cut(s) | 318, 870 |
| BstMAI | GTCTC | 1 cut(s) | 839 |
| BstMBI | GATC | 2 cut(s) | 315, 867 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 70 |
| BstNSI | RCATGY | 1 cut(s) | 380 |
| BstSFI | CTRYAG | 1 cut(s) | 351 |
| BstSLI | GKGCMC | 2 cut(s) | 402, 503 |
| BstUI | CGCG | 1 cut(s) | 320 |
| BstV1I | GCAGC | 1 cut(s) | 811 |
| BstV2I | GAAGAC | 1 cut(s) | 721 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 749 |
| BsuI | GTATCC | 2 cut(s) | 541, 602 |
| BsuRI | GGCC | 2 cut(s) | 400, 501 |
| BtgI | CCRYGG | 1 cut(s) | 615 |
| BtsCI | GGATG | 1 cut(s) | 730 |
| BtuMI | TCGCGA | 1 cut(s) | 320 |
| Cac8I | GCNNGC | 1 cut(s) | 655 |
| CciI | TCATGA | 2 cut(s) | 421, 732 |
| CfoI | GCGC | 5 cut(s) | 64, 75, 135, 456, 614 |
| Cfr13I | GGNCC | 4 cut(s) | 398, 399, 499, 500 |
| Csp6I | GTAC | 1 cut(s) | 466 |
| CviAII | CATG | 6 cut(s) | 365, 377, 422, 485, 616, 733 |
| CviQI | GTAC | 1 cut(s) | 466 |
| DdeI | CTNAG | 4 cut(s) | 14, 357, 471, 702 |
| DinI | GGCGCC | 1 cut(s) | 613 |
| DpnI | GATC | 2 cut(s) | 317, 869 |
| DpnII | GATC | 2 cut(s) | 315, 867 |
| DraI | TTTAAA | 1 cut(s) | 786 |
| DraIII | CACNNNGTG | 1 cut(s) | 557 |
| DriI | GACNNNNNGTC | 1 cut(s) | 215 |
| Eam1104I | CTCTTC | 2 cut(s) | 63, 183 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 215 |
| EarI | CTCTTC | 2 cut(s) | 63, 183 |
| EciI | GGCGGA | 1 cut(s) | 768 |
| Ecl136II | GAGCTC | 1 cut(s) | 730 |
| Eco130I | CCWWGG | 1 cut(s) | 615 |
| Eco24I | GRGCYC | 3 cut(s) | 402, 503, 732 |
| Eco31I | GGTCTC | 1 cut(s) | 839 |
| Eco47III | AGCGCT | 2 cut(s) | 63, 74 |
| Eco53kI | GAGCTC | 1 cut(s) | 730 |
| Eco57I | CTGAAG | 2 cut(s) | 318, 686 |
| Eco72I | CACGTG | 2 cut(s) | 554, 572 |
| EcoICRI | GAGCTC | 1 cut(s) | 730 |
| EcoO109I | RGGNCCY | 1 cut(s) | 398 |
| EcoT14I | CCWWGG | 1 cut(s) | 615 |
| EcoT38I | GRGCYC | 3 cut(s) | 402, 503, 732 |
| EgeI | GGCGCC | 1 cut(s) | 613 |
| EheI | GGCGCC | 1 cut(s) | 613 |
| ErhI | CCWWGG | 1 cut(s) | 615 |
| FaeI | CATG | 6 cut(s) | 368, 380, 425, 488, 619, 736 |
| FaqI | GGGAC | 2 cut(s) | 495, 504 |
| FatI | CATG | 6 cut(s) | 364, 376, 421, 484, 615, 732 |
| FauI | CCCGC | 1 cut(s) | 662 |
| Fnu4HI | GCNGC | 1 cut(s) | 800 |
| FokI | GGATG | 1 cut(s) | 737 |
| FriOI | GRGCYC | 3 cut(s) | 402, 503, 732 |
| Fsp4HI | GCNGC | 1 cut(s) | 800 |
| FspBI | CTAG | 4 cut(s) | 65, 597, 644, 675 |
| GlaI | GCGC | 5 cut(s) | 63, 74, 134, 455, 613 |
| GluI | GCNGC | 1 cut(s) | 800 |
| HaeII | RGCGCY | 3 cut(s) | 65, 76, 615 |
| HaeIII | GGCC | 2 cut(s) | 400, 501 |
| HhaI | GCGC | 5 cut(s) | 64, 75, 135, 456, 614 |
| Hin1I | GRCGYC | 1 cut(s) | 612 |
| Hin1II | CATG | 6 cut(s) | 368, 380, 425, 488, 619, 736 |
| Hin6I | GCGC | 5 cut(s) | 62, 73, 133, 454, 612 |
| HinP1I | GCGC | 5 cut(s) | 62, 73, 133, 454, 612 |
| HinfI | GANTC | 4 cut(s) | 92, 717, 745, 774 |
| HphI | GGTGA | 1 cut(s) | 817 |
| Hpy166II | GTNNAC | 1 cut(s) | 209 |
| Hpy188I | TCNGA | 2 cut(s) | 17, 172 |
| Hpy188III | TCNNGA | 4 cut(s) | 37, 319, 422, 733 |
| Hpy8I | GTNNAC | 1 cut(s) | 209 |
| HpyAV | CCTTC | 4 cut(s) | 106, 265, 518, 824 |
| HpyCH4III | ACNGT | 2 cut(s) | 189, 533 |
| HpyCH4IV | ACGT | 3 cut(s) | 493, 553, 571 |
| HpyCH4V | TGCA | 2 cut(s) | 44, 440 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 70 |
| HpyF3I | CTNAG | 4 cut(s) | 14, 357, 471, 702 |
| HpySE526I | ACGT | 3 cut(s) | 493, 553, 571 |
| Hsp92I | GRCGYC | 1 cut(s) | 612 |
| Hsp92II | CATG | 6 cut(s) | 368, 380, 425, 488, 619, 736 |
| HspAI | GCGC | 5 cut(s) | 62, 73, 133, 454, 612 |
| KasI | GGCGCC | 1 cut(s) | 611 |
| KpnI | GGTACC | 1 cut(s) | 469 |
| Kzo9I | GATC | 2 cut(s) | 315, 867 |
| LguI | GCTCTTC | 2 cut(s) | 63, 183 |
| LpnPI | CCDG | 6 cut(s) | 117, 228, 294, 381, 755, 788 |
| Lsp1109I | GCAGC | 1 cut(s) | 811 |
| MaeI | CTAG | 4 cut(s) | 65, 597, 644, 675 |
| MaeII | ACGT | 3 cut(s) | 493, 553, 571 |
| MaeIII | GTNAC | 1 cut(s) | 9 |
| MalI | GATC | 2 cut(s) | 317, 869 |
| MboI | GATC | 2 cut(s) | 315, 867 |
| MboII | GAAGA | 4 cut(s) | 80, 170, 726, 748 |
| MfeI | CAATTG | 1 cut(s) | 234 |
| MhlI | GDGCHC | 3 cut(s) | 402, 503, 732 |
| MluCI | AATT | 5 cut(s) | 166, 234, 385, 391, 430 |
| Mly113I | GGCGCC | 1 cut(s) | 612 |
| MlyI | GAGTC | 2 cut(s) | 711, 783 |
| MroXI | GAANNNNTTC | 1 cut(s) | 177 |
| MseI | TTAA | 2 cut(s) | 339, 785 |
| MslI | CAYNNNNRTG | 1 cut(s) | 377 |
| MspA1I | CMGCKG | 1 cut(s) | 802 |
| MunI | CAATTG | 1 cut(s) | 234 |
| Mva1269I | GAATGC | 1 cut(s) | 46 |
| MvnI | CGCG | 1 cut(s) | 320 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 70 |
| NarI | GGCGCC | 1 cut(s) | 612 |
| NcoI | CCATGG | 1 cut(s) | 615 |
| NdeII | GATC | 2 cut(s) | 315, 867 |
| NlaIII | CATG | 6 cut(s) | 368, 380, 425, 488, 619, 736 |
| NlaIV | GGNNCC | 5 cut(s) | 400, 467, 501, 613, 634 |
| NmuCI | GTSAC | 1 cut(s) | 9 |
| NruI | TCGCGA | 1 cut(s) | 320 |
| NspI | RCATGY | 1 cut(s) | 380 |
| PagI | TCATGA | 2 cut(s) | 421, 732 |
| PciI | ACATGT | 1 cut(s) | 376 |
| PciSI | GCTCTTC | 2 cut(s) | 63, 183 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 657 |
| PctI | GAATGC | 1 cut(s) | 46 |
| PdmI | GAANNNNTTC | 1 cut(s) | 177 |
| PfeI | GAWTC | 2 cut(s) | 92, 745 |
| PkrI | GCNGC | 1 cut(s) | 801 |
| PleI | GAGTC | 2 cut(s) | 711, 782 |
| PluTI | GGCGCC | 1 cut(s) | 615 |
| PmaCI | CACGTG | 2 cut(s) | 554, 572 |
| PmlI | CACGTG | 2 cut(s) | 554, 572 |
| PpsI | GAGTC | 2 cut(s) | 711, 782 |
| Ppu21I | YACGTR | 2 cut(s) | 554, 572 |
| PscI | ACATGT | 1 cut(s) | 376 |
| PshBI | ATTAAT | 1 cut(s) | 339 |
| PsiI | TTATAA | 2 cut(s) | 390, 435 |
| Psp124BI | GAGCTC | 1 cut(s) | 732 |
| PspCI | CACGTG | 2 cut(s) | 554, 572 |
| PspN4I | GGNNCC | 5 cut(s) | 400, 467, 501, 613, 634 |
| PspOMI | GGGCCC | 2 cut(s) | 398, 499 |
| PspPI | GGNCC | 4 cut(s) | 398, 399, 499, 500 |
| PvuII | CAGCTG | 1 cut(s) | 802 |
| RruI | TCGCGA | 1 cut(s) | 320 |
| RsaI | GTAC | 1 cut(s) | 467 |
| RsaNI | GTAC | 1 cut(s) | 466 |
| RseI | CAYNNNNRTG | 1 cut(s) | 377 |
| SacI | GAGCTC | 1 cut(s) | 732 |
| SapI | GCTCTTC | 2 cut(s) | 63, 183 |
| SaqAI | TTAA | 2 cut(s) | 339, 785 |
| SatI | GCNGC | 1 cut(s) | 800 |
| Sau3AI | GATC | 2 cut(s) | 315, 867 |
| Sau96I | GGNCC | 4 cut(s) | 398, 399, 499, 500 |
| SchI | GAGTC | 2 cut(s) | 711, 783 |
| SduI | GDGCHC | 3 cut(s) | 402, 503, 732 |
| SfcI | CTRYAG | 1 cut(s) | 351 |
| SfoI | GGCGCC | 1 cut(s) | 613 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 377 |
| SmlI | CTYRAG | 2 cut(s) | 719, 836 |
| SmoI | CTYRAG | 2 cut(s) | 719, 836 |
| Sse9I | AATT | 5 cut(s) | 166, 234, 385, 391, 430 |
| SsiI | CCGC | 3 cut(s) | 511, 655, 753 |
| SspDI | GGCGCC | 1 cut(s) | 611 |
| SspMI | CTAG | 4 cut(s) | 65, 597, 644, 675 |
| SstI | GAGCTC | 1 cut(s) | 732 |
| StyI | CCWWGG | 1 cut(s) | 615 |
| TaaI | ACNGT | 2 cut(s) | 189, 533 |
| TaiI | ACGT | 3 cut(s) | 496, 556, 574 |
| TaqII | GACCGA | 1 cut(s) | 22 |
| TasI | AATT | 5 cut(s) | 166, 234, 385, 391, 430 |
| TfiI | GAWTC | 2 cut(s) | 92, 745 |
| Tru1I | TTAA | 2 cut(s) | 339, 785 |
| Tru9I | TTAA | 2 cut(s) | 339, 785 |
| TseFI | GTSAC | 1 cut(s) | 9 |
| TseI | GCWGC | 1 cut(s) | 799 |
| Tsp45I | GTSAC | 1 cut(s) | 9 |
| TspDTI | ATGAA | 4 cut(s) | 317, 410, 749, 804 |
| TspGWI | ACGGA | 2 cut(s) | 181, 328 |
| VspI | ATTAAT | 1 cut(s) | 339 |
| XceI | RCATGY | 1 cut(s) | 380 |
| XmnI | GAANNNNTTC | 1 cut(s) | 177 |
| XspI | CTAG | 4 cut(s) | 65, 597, 644, 675 |