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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 4 cut(s) | 140, 914, 989, 1070 |
| AccII | CGCG | 2 cut(s) | 995, 1260 |
| AciI | CCGC | 9 cut(s) | 4, 132, 358, 459, 640, 835, 993, 1260, 1318 |
| AclWI | GGATC | 1 cut(s) | 829 |
| AcsI | RAATTY | 1 cut(s) | 707 |
| AfaI | GTAC | 3 cut(s) | 417, 527, 663 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 198, 1015, 1019 |
| AgsI | TTSAA | 4 cut(s) | 655, 679, 952, 1106 |
| AjnI | CCWGG | 2 cut(s) | 408, 1075 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 503, 535 |
| AluBI | AGCT | 2 cut(s) | 261, 440 |
| AluI | AGCT | 2 cut(s) | 261, 440 |
| Alw21I | GWGCWC | 2 cut(s) | 213, 1302 |
| Alw26I | GTCTC | 6 cut(s) | 175, 571, 775, 925, 1205, 1260 |
| Alw44I | GTGCAC | 1 cut(s) | 1298 |
| AlwI | GGATC | 1 cut(s) | 829 |
| AoxI | GGCC | 6 cut(s) | 6, 25, 41, 74, 80, 372 |
| ApaI | GGGCCC | 1 cut(s) | 10 |
| ApaLI | GTGCAC | 1 cut(s) | 1298 |
| ApeKI | GCWGC | 1 cut(s) | 1085 |
| ApoI | RAATTY | 1 cut(s) | 707 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1190 |
| AspA2I | CCTAGG | 2 cut(s) | 77, 1013 |
| AspLEI | GCGC | 1 cut(s) | 958 |
| AspS9I | GGNCC | 3 cut(s) | 6, 7, 41 |
| AsuHPI | GGTGA | 2 cut(s) | 1091, 1211 |
| AvrII | CCTAGG | 2 cut(s) | 77, 1013 |
| AxyI | CCTNAGG | 1 cut(s) | 136 |
| BaeGI | GKGCMC | 2 cut(s) | 10, 1302 |
| BanI | GGYRCC | 4 cut(s) | 140, 914, 989, 1070 |
| BanII | GRGCYC | 1 cut(s) | 10 |
| BbsI | GAAGAC | 2 cut(s) | 552, 755 |
| Bbv12I | GWGCWC | 2 cut(s) | 213, 1302 |
| BbvI | GCAGC | 1 cut(s) | 1072 |
| BccI | CCATC | 6 cut(s) | 371, 621, 1061, 1065, 1190, 1268 |
| BceAI | ACGGC | 1 cut(s) | 470 |
| BciT130I | CCWGG | 2 cut(s) | 410, 1077 |
| BciVI | GTATCC | 1 cut(s) | 382 |
| BclI | TGATCA | 1 cut(s) | 93 |
| BcoDI | GTCTC | 6 cut(s) | 175, 571, 775, 925, 1205, 1260 |
| BfaI | CTAG | 5 cut(s) | 78, 398, 405, 617, 1014 |
| BfoI | RGCGCY | 1 cut(s) | 959 |
| BfuI | GTATCC | 1 cut(s) | 382 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 467 |
| BglII | AGATCT | 2 cut(s) | 237, 269 |
| BisI | GCNGC | 3 cut(s) | 132, 459, 1086 |
| BlnI | CCTAGG | 2 cut(s) | 77, 1013 |
| BlsI | GCNGC | 3 cut(s) | 133, 460, 1087 |
| BmcAI | AGTACT | 1 cut(s) | 663 |
| Bme1390I | CCNGG | 2 cut(s) | 410, 1077 |
| BmgT120I | GGNCC | 3 cut(s) | 6, 7, 41 |
| BmiI | GGNNCC | 6 cut(s) | 8, 142, 857, 916, 991, 1072 |
| BmrFI | CCNGG | 2 cut(s) | 410, 1077 |
| BmrI | ACTGGG | 1 cut(s) | 48 |
| BmsI | GCATC | 3 cut(s) | 373, 1062, 1072 |
| BmuI | ACTGGG | 1 cut(s) | 48 |
| BpiI | GAAGAC | 2 cut(s) | 552, 755 |
| BpuEI | CTTGAG | 1 cut(s) | 353 |
| BsaI | GGTCTC | 3 cut(s) | 175, 571, 1260 |
| BsaJI | CCNNGG | 4 cut(s) | 77, 1013, 1044, 1075 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 198, 1015, 1019 |
| Bse1I | ACTGG | 3 cut(s) | 43, 328, 523 |
| Bse21I | CCTNAGG | 1 cut(s) | 136 |
| BseBI | CCWGG | 2 cut(s) | 410, 1077 |
| BseDI | CCNNGG | 4 cut(s) | 77, 1013, 1044, 1075 |
| BseGI | GGATG | 4 cut(s) | 489, 517, 1053, 1314 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 198, 1015, 1019 |
| BseMII | CTCAG | 2 cut(s) | 43, 150 |
| BseNI | ACTGG | 3 cut(s) | 43, 328, 523 |
| BseSI | GKGCMC | 2 cut(s) | 10, 1302 |
| BseXI | GCAGC | 1 cut(s) | 1072 |
| Bsh1236I | CGCG | 2 cut(s) | 995, 1260 |
| BshFI | GGCC | 6 cut(s) | 8, 27, 43, 76, 82, 374 |
| BshNI | GGYRCC | 4 cut(s) | 140, 914, 989, 1070 |
| BsiHKAI | GWGCWC | 2 cut(s) | 213, 1302 |
| BsiSI | CCGG | 1 cut(s) | 154 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 198, 1015, 1019 |
| BsmAI | GTCTC | 6 cut(s) | 175, 571, 775, 925, 1205, 1260 |
| BsmBI | CGTCTC | 1 cut(s) | 775 |
| BsmI | GAATGC | 1 cut(s) | 387 |
| BsnI | GGCC | 6 cut(s) | 8, 27, 43, 76, 82, 374 |
| Bso31I | GGTCTC | 3 cut(s) | 175, 571, 1260 |
| Bsp120I | GGGCCC | 1 cut(s) | 6 |
| Bsp1286I | GDGCHC | 3 cut(s) | 10, 213, 1302 |
| Bsp143I | GATC | 7 cut(s) | 93, 126, 237, 269, 723, 821, 848 |
| Bsp19I | CCATGG | 1 cut(s) | 1044 |
| BspACI | CCGC | 9 cut(s) | 4, 132, 358, 459, 640, 835, 993, 1260, 1318 |
| BspANI | GGCC | 6 cut(s) | 8, 27, 43, 76, 82, 374 |
| BspCNI | CTCAG | 2 cut(s) | 42, 149 |
| BspFNI | CGCG | 2 cut(s) | 995, 1260 |
| BspLI | GGNNCC | 6 cut(s) | 8, 142, 857, 916, 991, 1072 |
| BspPI | GGATC | 1 cut(s) | 829 |
| BspT107I | GGYRCC | 4 cut(s) | 140, 914, 989, 1070 |
| BspTNI | GGTCTC | 3 cut(s) | 175, 571, 1260 |
| BsrI | ACTGG | 3 cut(s) | 43, 328, 523 |
| BssECI | CCNNGG | 4 cut(s) | 77, 1013, 1044, 1075 |
| BssMI | GATC | 7 cut(s) | 93, 126, 237, 269, 723, 821, 848 |
| BssT1I | CCWWGG | 3 cut(s) | 77, 1013, 1044 |
| Bst2UI | CCWGG | 2 cut(s) | 410, 1077 |
| Bst4CI | ACNGT | 2 cut(s) | 198, 647 |
| Bst6I | CTCTTC | 2 cut(s) | 57, 856 |
| BstC8I | GCNNGC | 3 cut(s) | 6, 362, 1021 |
| BstDEI | CTNAG | 7 cut(s) | 29, 136, 248, 280, 463, 788, 927 |
| BstDSI | CCRYGG | 1 cut(s) | 1044 |
| BstEII | GGTNACC | 1 cut(s) | 830 |
| BstF5I | GGATG | 4 cut(s) | 489, 517, 1053, 1314 |
| BstFNI | CGCG | 2 cut(s) | 995, 1260 |
| BstH2I | RGCGCY | 1 cut(s) | 959 |
| BstHHI | GCGC | 1 cut(s) | 958 |
| BstKTI | GATC | 7 cut(s) | 96, 129, 240, 272, 726, 824, 851 |
| BstMAI | GTCTC | 6 cut(s) | 175, 571, 775, 925, 1205, 1260 |
| BstMBI | GATC | 7 cut(s) | 93, 126, 237, 269, 723, 821, 848 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 446, 455, 467, 1159 |
| BstNI | CCWGG | 2 cut(s) | 410, 1077 |
| BstNSI | RCATGY | 1 cut(s) | 1129 |
| BstPI | GGTNACC | 1 cut(s) | 830 |
| BstSCI | CCNGG | 2 cut(s) | 408, 1075 |
| BstSLI | GKGCMC | 2 cut(s) | 10, 1302 |
| BstUI | CGCG | 2 cut(s) | 995, 1260 |
| BstV1I | GCAGC | 1 cut(s) | 1072 |
| BstV2I | GAAGAC | 2 cut(s) | 552, 755 |
| BstX2I | RGATCY | 2 cut(s) | 237, 269 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 911 |
| BstYI | RGATCY | 2 cut(s) | 237, 269 |
| Bsu36I | CCTNAGG | 1 cut(s) | 136 |
| BsuI | GTATCC | 1 cut(s) | 382 |
| BsuRI | GGCC | 6 cut(s) | 8, 27, 43, 76, 82, 374 |
| BtgI | CCRYGG | 1 cut(s) | 1044 |
| BtsCI | GGATG | 4 cut(s) | 489, 517, 1053, 1314 |
| BtsIMutI | CAGTG | 1 cut(s) | 37 |
| Cac8I | GCNNGC | 3 cut(s) | 6, 362, 1021 |
| CfoI | GCGC | 1 cut(s) | 958 |
| Cfr13I | GGNCC | 3 cut(s) | 6, 7, 41 |
| CseI | GACGC | 1 cut(s) | 984 |
| Csp6I | GTAC | 3 cut(s) | 416, 526, 662 |
| CviAII | CATG | 5 cut(s) | 905, 1037, 1045, 1126, 1237 |
| CviQI | GTAC | 3 cut(s) | 416, 526, 662 |
| DdeI | CTNAG | 7 cut(s) | 29, 136, 248, 280, 463, 788, 927 |
| DpnI | GATC | 7 cut(s) | 95, 128, 239, 271, 725, 823, 850 |
| DpnII | GATC | 7 cut(s) | 93, 126, 237, 269, 723, 821, 848 |
| DraI | TTTAAA | 2 cut(s) | 165, 1158 |
| Eam1104I | CTCTTC | 2 cut(s) | 57, 856 |
| EarI | CTCTTC | 2 cut(s) | 57, 856 |
| EciI | GGCGGA | 1 cut(s) | 347 |
| Eco130I | CCWWGG | 3 cut(s) | 77, 1013, 1044 |
| Eco147I | AGGCCT | 2 cut(s) | 27, 76 |
| Eco24I | GRGCYC | 1 cut(s) | 10 |
| Eco31I | GGTCTC | 3 cut(s) | 175, 571, 1260 |
| Eco32I | GATATC | 1 cut(s) | 335 |
| Eco81I | CCTNAGG | 1 cut(s) | 136 |
| Eco91I | GGTNACC | 1 cut(s) | 830 |
| EcoO65I | GGTNACC | 1 cut(s) | 830 |
| EcoRII | CCWGG | 2 cut(s) | 408, 1075 |
| EcoRV | GATATC | 1 cut(s) | 335 |
| EcoT14I | CCWWGG | 3 cut(s) | 77, 1013, 1044 |
| EcoT38I | GRGCYC | 1 cut(s) | 10 |
| ErhI | CCWWGG | 3 cut(s) | 77, 1013, 1044 |
| Esp3I | CGTCTC | 1 cut(s) | 775 |
| FaeI | CATG | 5 cut(s) | 908, 1040, 1048, 1129, 1240 |
| FatI | CATG | 5 cut(s) | 904, 1036, 1044, 1125, 1236 |
| FauNDI | CATATG | 1 cut(s) | 507 |
| FbaI | TGATCA | 1 cut(s) | 93 |
| Fnu4HI | GCNGC | 3 cut(s) | 132, 459, 1086 |
| FokI | GGATG | 4 cut(s) | 476, 524, 1040, 1301 |
| FriOI | GRGCYC | 1 cut(s) | 10 |
| Fsp4HI | GCNGC | 3 cut(s) | 132, 459, 1086 |
| FspBI | CTAG | 5 cut(s) | 78, 398, 405, 617, 1014 |
| GlaI | GCGC | 1 cut(s) | 957 |
| GluI | GCNGC | 3 cut(s) | 132, 459, 1086 |
| HaeII | RGCGCY | 1 cut(s) | 959 |
| HaeIII | GGCC | 6 cut(s) | 8, 27, 43, 76, 82, 374 |
| HapII | CCGG | 1 cut(s) | 154 |
| HgaI | GACGC | 1 cut(s) | 984 |
| HhaI | GCGC | 1 cut(s) | 958 |
| Hin1II | CATG | 5 cut(s) | 908, 1040, 1048, 1129, 1240 |
| Hin6I | GCGC | 1 cut(s) | 956 |
| HinP1I | GCGC | 1 cut(s) | 956 |
| HincII | GTYRAC | 1 cut(s) | 869 |
| HindII | GTYRAC | 1 cut(s) | 869 |
| HindIII | AAGCTT | 1 cut(s) | 438 |
| HinfI | GANTC | 6 cut(s) | 394, 499, 515, 599, 751, 800 |
| HpaII | CCGG | 1 cut(s) | 154 |
| HphI | GGTGA | 2 cut(s) | 1091, 1211 |
| Hpy166II | GTNNAC | 4 cut(s) | 869, 1003, 1179, 1300 |
| Hpy188I | TCNGA | 4 cut(s) | 116, 126, 901, 1119 |
| Hpy188III | TCNNGA | 5 cut(s) | 330, 398, 611, 1172, 1283 |
| Hpy8I | GTNNAC | 4 cut(s) | 869, 1003, 1179, 1300 |
| HpyAV | CCTTC | 2 cut(s) | 549, 772 |
| HpyCH4III | ACNGT | 2 cut(s) | 198, 647 |
| HpyCH4IV | ACGT | 2 cut(s) | 414, 871 |
| HpyCH4V | TGCA | 5 cut(s) | 776, 814, 1088, 1206, 1300 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 446, 455, 467, 1159 |
| HpyF3I | CTNAG | 7 cut(s) | 29, 136, 248, 280, 463, 788, 927 |
| HpySE526I | ACGT | 2 cut(s) | 414, 871 |
| Hsp92II | CATG | 5 cut(s) | 908, 1040, 1048, 1129, 1240 |
| HspAI | GCGC | 1 cut(s) | 956 |
| Ksp22I | TGATCA | 1 cut(s) | 93 |
| Kzo9I | GATC | 7 cut(s) | 93, 126, 237, 269, 723, 821, 848 |
| LmnI | GCTCC | 2 cut(s) | 226, 258 |
| Lsp1109I | GCAGC | 1 cut(s) | 1072 |
| LweI | GCATC | 3 cut(s) | 373, 1062, 1072 |
| MaeI | CTAG | 5 cut(s) | 78, 398, 405, 617, 1014 |
| MaeII | ACGT | 2 cut(s) | 414, 871 |
| MaeIII | GTNAC | 3 cut(s) | 34, 596, 830 |
| MalI | GATC | 7 cut(s) | 95, 128, 239, 271, 725, 823, 850 |
| MboI | GATC | 7 cut(s) | 93, 126, 237, 269, 723, 821, 848 |
| MboII | GAAGA | 7 cut(s) | 25, 74, 554, 557, 587, 760, 873 |
| MfeI | CAATTG | 2 cut(s) | 89, 311 |
| MflI | RGATCY | 2 cut(s) | 237, 269 |
| MhlI | GDGCHC | 3 cut(s) | 10, 213, 1302 |
| MluCI | AATT | 4 cut(s) | 89, 296, 311, 707 |
| MlyI | GAGTC | 3 cut(s) | 493, 593, 745 |
| MmeI | TCCRAC | 2 cut(s) | 139, 1201 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1190 |
| MseI | TTAA | 4 cut(s) | 164, 693, 701, 1157 |
| MslI | CAYNNNNRTG | 7 cut(s) | 494, 510, 909, 939, 1062, 1065, 1249 |
| MspI | CCGG | 1 cut(s) | 154 |
| MspR9I | CCNGG | 2 cut(s) | 410, 1077 |
| MunI | CAATTG | 2 cut(s) | 89, 311 |
| Mva1269I | GAATGC | 1 cut(s) | 387 |
| MvaI | CCWGG | 2 cut(s) | 410, 1077 |
| MvnI | CGCG | 2 cut(s) | 995, 1260 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 446, 455, 467, 1159 |
| NcoI | CCATGG | 1 cut(s) | 1044 |
| NdeI | CATATG | 1 cut(s) | 507 |
| NdeII | GATC | 7 cut(s) | 93, 126, 237, 269, 723, 821, 848 |
| NlaIII | CATG | 5 cut(s) | 908, 1040, 1048, 1129, 1240 |
| NlaIV | GGNNCC | 6 cut(s) | 8, 142, 857, 916, 991, 1072 |
| NmuCI | GTSAC | 2 cut(s) | 34, 596 |
| NspI | RCATGY | 1 cut(s) | 1129 |
| PceI | AGGCCT | 2 cut(s) | 27, 76 |
| PctI | GAATGC | 1 cut(s) | 387 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1190 |
| PfeI | GAWTC | 3 cut(s) | 394, 515, 800 |
| PkrI | GCNGC | 3 cut(s) | 133, 460, 1087 |
| PleI | GAGTC | 3 cut(s) | 493, 593, 745 |
| PpsI | GAGTC | 3 cut(s) | 493, 593, 745 |
| Psp6I | CCWGG | 2 cut(s) | 408, 1075 |
| PspEI | GGTNACC | 1 cut(s) | 830 |
| PspGI | CCWGG | 2 cut(s) | 408, 1075 |
| PspN4I | GGNNCC | 6 cut(s) | 8, 142, 857, 916, 991, 1072 |
| PspOMI | GGGCCC | 1 cut(s) | 6 |
| PspPI | GGNCC | 3 cut(s) | 6, 7, 41 |
| PsuI | RGATCY | 2 cut(s) | 237, 269 |
| RsaI | GTAC | 3 cut(s) | 417, 527, 663 |
| RsaNI | GTAC | 3 cut(s) | 416, 526, 662 |
| RseI | CAYNNNNRTG | 7 cut(s) | 494, 510, 909, 939, 1062, 1065, 1249 |
| SaqAI | TTAA | 4 cut(s) | 164, 693, 701, 1157 |
| SatI | GCNGC | 3 cut(s) | 132, 459, 1086 |
| Sau3AI | GATC | 7 cut(s) | 93, 126, 237, 269, 723, 821, 848 |
| Sau96I | GGNCC | 3 cut(s) | 6, 7, 41 |
| ScaI | AGTACT | 1 cut(s) | 663 |
| SchI | GAGTC | 3 cut(s) | 493, 593, 745 |
| ScrFI | CCNGG | 2 cut(s) | 410, 1077 |
| SduI | GDGCHC | 3 cut(s) | 10, 213, 1302 |
| SfaNI | GCATC | 3 cut(s) | 373, 1062, 1072 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 494, 510, 909, 939, 1062, 1065, 1249 |
| SmlI | CTYRAG | 1 cut(s) | 368 |
| SmoI | CTYRAG | 1 cut(s) | 368 |
| Sse9I | AATT | 4 cut(s) | 89, 296, 311, 707 |
| SseBI | AGGCCT | 2 cut(s) | 27, 76 |
| SsiI | CCGC | 9 cut(s) | 4, 132, 358, 459, 640, 835, 993, 1260, 1318 |
| SspMI | CTAG | 5 cut(s) | 78, 398, 405, 617, 1014 |
| StuI | AGGCCT | 2 cut(s) | 27, 76 |
| StyD4I | CCNGG | 2 cut(s) | 408, 1075 |
| StyI | CCWWGG | 3 cut(s) | 77, 1013, 1044 |
| TaaI | ACNGT | 2 cut(s) | 198, 647 |
| TaiI | ACGT | 2 cut(s) | 417, 874 |
| TaqI | TCGA | 4 cut(s) | 573, 798, 1184, 1194 |
| TasI | AATT | 4 cut(s) | 89, 296, 311, 707 |
| TatI | WGTACW | 1 cut(s) | 661 |
| TauI | GCSGC | 2 cut(s) | 134, 461 |
| TfiI | GAWTC | 3 cut(s) | 394, 515, 800 |
| Tru1I | TTAA | 4 cut(s) | 164, 693, 701, 1157 |
| Tru9I | TTAA | 4 cut(s) | 164, 693, 701, 1157 |
| TscAI | CASTG | 1 cut(s) | 37 |
| TseFI | GTSAC | 2 cut(s) | 34, 596 |
| TseI | GCWGC | 1 cut(s) | 1085 |
| Tsp45I | GTSAC | 2 cut(s) | 34, 596 |
| TspDTI | ATGAA | 4 cut(s) | 551, 555, 719, 1253 |
| TspGWI | ACGGA | 3 cut(s) | 584, 834, 988 |
| TspRI | CASTG | 1 cut(s) | 37 |
| VneI | GTGCAC | 1 cut(s) | 1298 |
| XapI | RAATTY | 1 cut(s) | 707 |
| XbaI | TCTAGA | 1 cut(s) | 397 |
| XceI | RCATGY | 1 cut(s) | 1129 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1016, 1064 |
| XmaJI | CCTAGG | 2 cut(s) | 77, 1013 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1190 |
| XspI | CTAG | 5 cut(s) | 78, 398, 405, 617, 1014 |
| ZrmI | AGTACT | 1 cut(s) | 663 |