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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 171 |
| AccB1I | GGYRCC | 2 cut(s) | 924, 1082 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1135 |
| AccI | GTMKAC | 1 cut(s) | 953 |
| AccIII | TCCGGA | 1 cut(s) | 889 |
| AciI | CCGC | 4 cut(s) | 188, 589, 1003, 1224 |
| AclWI | GGATC | 3 cut(s) | 791, 861, 965 |
| AcoI | YGGCCR | 1 cut(s) | 1069 |
| AcsI | RAATTY | 2 cut(s) | 280, 668 |
| AcyI | GRCGYC | 2 cut(s) | 925, 1083 |
| AdeI | CACNNNGTG | 1 cut(s) | 1264 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1135 |
| AgsI | TTSAA | 2 cut(s) | 604, 1120 |
| AjiI | CACGTC | 5 cut(s) | 36, 98, 150, 175, 439 |
| AjnI | CCWGG | 2 cut(s) | 408, 432 |
| AluBI | AGCT | 7 cut(s) | 351, 458, 464, 802, 812, 1205, 1256 |
| AluI | AGCT | 7 cut(s) | 351, 458, 464, 802, 812, 1205, 1256 |
| Alw21I | GWGCWC | 2 cut(s) | 804, 1207 |
| Alw26I | GTCTC | 1 cut(s) | 736 |
| AlwI | GGATC | 3 cut(s) | 791, 861, 965 |
| Aor13HI | TCCGGA | 1 cut(s) | 889 |
| AoxI | GGCC | 4 cut(s) | 9, 23, 238, 1069 |
| ApoI | RAATTY | 2 cut(s) | 280, 668 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 633 |
| AspLEI | GCGC | 3 cut(s) | 927, 1085, 1126 |
| AspS9I | GGNCC | 7 cut(s) | 10, 24, 47, 111, 137, 162, 238 |
| AsuC2I | CCSGG | 1 cut(s) | 214 |
| AsuHPI | GGTGA | 1 cut(s) | 1213 |
| AvaII | GGWCC | 4 cut(s) | 47, 111, 137, 162 |
| BaeGI | GKGCMC | 1 cut(s) | 1192 |
| BalI | TGGCCA | 1 cut(s) | 1071 |
| BanI | GGYRCC | 2 cut(s) | 924, 1082 |
| BanII | GRGCYC | 2 cut(s) | 804, 1207 |
| BauI | CACGAG | 1 cut(s) | 1206 |
| BbsI | GAAGAC | 1 cut(s) | 716 |
| Bbv12I | GWGCWC | 2 cut(s) | 804, 1207 |
| BccI | CCATC | 5 cut(s) | 395, 518, 570, 736, 1110 |
| BciT130I | CCWGG | 2 cut(s) | 410, 434 |
| BclI | TGATCA | 1 cut(s) | 1180 |
| BcnI | CCSGG | 1 cut(s) | 214 |
| BcoDI | GTCTC | 1 cut(s) | 736 |
| BfaI | CTAG | 5 cut(s) | 348, 422, 429, 566, 1292 |
| BfoI | RGCGCY | 3 cut(s) | 928, 1086, 1127 |
| BfuAI | ACCTGC | 1 cut(s) | 171 |
| Bme1390I | CCNGG | 3 cut(s) | 214, 410, 434 |
| Bme18I | GGWCC | 4 cut(s) | 47, 111, 137, 162 |
| BmgBI | CACGTC | 5 cut(s) | 36, 98, 150, 175, 439 |
| BmgT120I | GGNCC | 7 cut(s) | 10, 24, 47, 111, 137, 162, 238 |
| BmiI | GGNNCC | 9 cut(s) | 49, 112, 113, 138, 139, 163, 926, 1025, 1084 |
| BmrFI | CCNGG | 3 cut(s) | 214, 410, 434 |
| BmsI | GCATC | 2 cut(s) | 682, 1102 |
| BpiI | GAAGAC | 1 cut(s) | 716 |
| BpuEI | CTTGAG | 2 cut(s) | 377, 444 |
| BpuMI | CCSGG | 1 cut(s) | 214 |
| BsaHI | GRCGYC | 2 cut(s) | 925, 1083 |
| BsaJI | CCNNGG | 2 cut(s) | 13, 870 |
| BsaWI | WCCGGW | 1 cut(s) | 889 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1135 |
| BseAI | TCCGGA | 1 cut(s) | 889 |
| BseBI | CCWGG | 2 cut(s) | 410, 434 |
| BseDI | CCNNGG | 2 cut(s) | 13, 870 |
| BseGI | GGATG | 2 cut(s) | 309, 513 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1135 |
| BseSI | GKGCMC | 1 cut(s) | 1192 |
| BshFI | GGCC | 4 cut(s) | 11, 25, 240, 1071 |
| BshNI | GGYRCC | 2 cut(s) | 924, 1082 |
| BsiHKAI | GWGCWC | 2 cut(s) | 804, 1207 |
| BsiSI | CCGG | 5 cut(s) | 203, 214, 225, 286, 890 |
| BslFI | GGGAC | 3 cut(s) | 124, 150, 175 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1135 |
| BsmAI | GTCTC | 1 cut(s) | 736 |
| BsmBI | CGTCTC | 1 cut(s) | 736 |
| BsmFI | GGGAC | 3 cut(s) | 124, 150, 175 |
| BsnI | GGCC | 4 cut(s) | 11, 25, 240, 1071 |
| Bsp1286I | GDGCHC | 3 cut(s) | 804, 1192, 1207 |
| Bsp13I | TCCGGA | 1 cut(s) | 889 |
| Bsp143I | GATC | 8 cut(s) | 274, 684, 783, 866, 970, 1180, 1276, 1288 |
| BspACI | CCGC | 4 cut(s) | 188, 589, 1003, 1224 |
| BspANI | GGCC | 4 cut(s) | 11, 25, 240, 1071 |
| BspEI | TCCGGA | 1 cut(s) | 889 |
| BspHI | TCATGA | 1 cut(s) | 796 |
| BspLI | GGNNCC | 9 cut(s) | 49, 112, 113, 138, 139, 163, 926, 1025, 1084 |
| BspMI | ACCTGC | 1 cut(s) | 171 |
| BspPI | GGATC | 3 cut(s) | 791, 861, 965 |
| BspT107I | GGYRCC | 2 cut(s) | 924, 1082 |
| BssECI | CCNNGG | 2 cut(s) | 13, 870 |
| BssMI | GATC | 8 cut(s) | 274, 684, 783, 866, 970, 1180, 1276, 1288 |
| BssNAI | GTATAC | 1 cut(s) | 954 |
| BssNI | GRCGYC | 2 cut(s) | 925, 1083 |
| BssSI | CACGAG | 1 cut(s) | 1206 |
| Bst1107I | GTATAC | 1 cut(s) | 954 |
| Bst2BI | CACGAG | 1 cut(s) | 1206 |
| Bst2UI | CCWGG | 2 cut(s) | 410, 434 |
| Bst4CI | ACNGT | 2 cut(s) | 448, 820 |
| BstACI | GRCGYC | 2 cut(s) | 925, 1083 |
| BstC8I | GCNNGC | 2 cut(s) | 23, 456 |
| BstDEI | CTNAG | 4 cut(s) | 487, 915, 947, 1095 |
| BstDSI | CCRYGG | 2 cut(s) | 13, 870 |
| BstEII | GGTNACC | 1 cut(s) | 998 |
| BstF5I | GGATG | 2 cut(s) | 309, 513 |
| BstH2I | RGCGCY | 3 cut(s) | 928, 1086, 1127 |
| BstHHI | GCGC | 3 cut(s) | 927, 1085, 1126 |
| BstKTI | GATC | 8 cut(s) | 277, 687, 786, 869, 973, 1183, 1279, 1291 |
| BstMAI | GTCTC | 1 cut(s) | 736 |
| BstMBI | GATC | 8 cut(s) | 274, 684, 783, 866, 970, 1180, 1276, 1288 |
| BstNI | CCWGG | 2 cut(s) | 410, 434 |
| BstPI | GGTNACC | 1 cut(s) | 998 |
| BstSCI | CCNGG | 3 cut(s) | 212, 408, 432 |
| BstSLI | GKGCMC | 1 cut(s) | 1192 |
| BstV2I | GAAGAC | 1 cut(s) | 716 |
| BstX2I | RGATCY | 1 cut(s) | 866 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1079 |
| BstYI | RGATCY | 1 cut(s) | 866 |
| BstZ17I | GTATAC | 1 cut(s) | 954 |
| BsuRI | GGCC | 4 cut(s) | 11, 25, 240, 1071 |
| BtgI | CCRYGG | 2 cut(s) | 13, 870 |
| BtgZI | GCGATG | 2 cut(s) | 589, 710 |
| BtrI | CACGTC | 5 cut(s) | 36, 98, 150, 175, 439 |
| BtsCI | GGATG | 2 cut(s) | 309, 513 |
| BtsI | GCAGTG | 4 cut(s) | 51, 65, 89, 141 |
| BtsIMutI | CAGTG | 5 cut(s) | 51, 65, 81, 89, 141 |
| BveI | ACCTGC | 1 cut(s) | 171 |
| Cac8I | GCNNGC | 2 cut(s) | 23, 456 |
| CciI | TCATGA | 1 cut(s) | 796 |
| CfoI | GCGC | 3 cut(s) | 927, 1085, 1126 |
| Cfr13I | GGNCC | 7 cut(s) | 10, 24, 47, 111, 137, 162, 238 |
| CseI | GACGC | 1 cut(s) | 27 |
| CviAII | CATG | 4 cut(s) | 72, 797, 833, 1073 |
| DdeI | CTNAG | 4 cut(s) | 487, 915, 947, 1095 |
| DinI | GGCGCC | 2 cut(s) | 926, 1084 |
| DpnI | GATC | 8 cut(s) | 276, 686, 785, 868, 972, 1182, 1278, 1290 |
| DpnII | GATC | 8 cut(s) | 274, 684, 783, 866, 970, 1180, 1276, 1288 |
| DraIII | CACNNNGTG | 1 cut(s) | 1264 |
| EaeI | YGGCCR | 1 cut(s) | 1069 |
| Ecl136II | GAGCTC | 2 cut(s) | 802, 1205 |
| Eco24I | GRGCYC | 2 cut(s) | 804, 1207 |
| Eco32I | GATATC | 2 cut(s) | 359, 379 |
| Eco47I | GGWCC | 4 cut(s) | 47, 111, 137, 162 |
| Eco53kI | GAGCTC | 2 cut(s) | 802, 1205 |
| Eco91I | GGTNACC | 1 cut(s) | 998 |
| EcoICRI | GAGCTC | 2 cut(s) | 802, 1205 |
| EcoO109I | RGGNCCY | 4 cut(s) | 47, 111, 137, 162 |
| EcoO65I | GGTNACC | 1 cut(s) | 998 |
| EcoRI | GAATTC | 1 cut(s) | 668 |
| EcoRII | CCWGG | 2 cut(s) | 408, 432 |
| EcoRV | GATATC | 2 cut(s) | 359, 379 |
| EcoT38I | GRGCYC | 2 cut(s) | 804, 1207 |
| EgeI | GGCGCC | 2 cut(s) | 926, 1084 |
| EheI | GGCGCC | 2 cut(s) | 926, 1084 |
| Esp3I | CGTCTC | 1 cut(s) | 736 |
| FaeI | CATG | 4 cut(s) | 75, 800, 836, 1076 |
| FaqI | GGGAC | 3 cut(s) | 124, 150, 175 |
| FatI | CATG | 4 cut(s) | 71, 796, 832, 1072 |
| FbaI | TGATCA | 1 cut(s) | 1180 |
| FblI | GTMKAC | 1 cut(s) | 953 |
| FokI | GGATG | 2 cut(s) | 316, 500 |
| FriOI | GRGCYC | 2 cut(s) | 804, 1207 |
| FspBI | CTAG | 5 cut(s) | 348, 422, 429, 566, 1292 |
| GlaI | GCGC | 3 cut(s) | 926, 1084, 1125 |
| HaeII | RGCGCY | 3 cut(s) | 928, 1086, 1127 |
| HaeIII | GGCC | 4 cut(s) | 11, 25, 240, 1071 |
| HapII | CCGG | 5 cut(s) | 203, 214, 225, 286, 890 |
| HgaI | GACGC | 1 cut(s) | 27 |
| HhaI | GCGC | 3 cut(s) | 927, 1085, 1126 |
| Hin1I | GRCGYC | 2 cut(s) | 925, 1083 |
| Hin1II | CATG | 4 cut(s) | 75, 800, 836, 1076 |
| Hin6I | GCGC | 3 cut(s) | 925, 1083, 1124 |
| HinP1I | GCGC | 3 cut(s) | 925, 1083, 1124 |
| HincII | GTYRAC | 2 cut(s) | 153, 193 |
| HindII | GTYRAC | 2 cut(s) | 153, 193 |
| HindIII | AAGCTT | 1 cut(s) | 462 |
| HinfI | GANTC | 7 cut(s) | 405, 418, 523, 548, 712, 762, 893 |
| HpaII | CCGG | 5 cut(s) | 203, 214, 225, 286, 890 |
| HphI | GGTGA | 1 cut(s) | 1213 |
| Hpy166II | GTNNAC | 4 cut(s) | 153, 193, 954, 1037 |
| Hpy188I | TCNGA | 5 cut(s) | 262, 274, 628, 970, 1180 |
| Hpy8I | GTNNAC | 4 cut(s) | 153, 193, 954, 1037 |
| HpyAV | CCTTC | 2 cut(s) | 733, 989 |
| HpyCH4III | ACNGT | 2 cut(s) | 448, 820 |
| HpyCH4IV | ACGT | 7 cut(s) | 35, 97, 149, 174, 438, 540, 1039 |
| HpyCH4V | TGCA | 2 cut(s) | 737, 776 |
| HpyF3I | CTNAG | 4 cut(s) | 487, 915, 947, 1095 |
| HpySE526I | ACGT | 7 cut(s) | 35, 97, 149, 174, 438, 540, 1039 |
| Hsp92I | GRCGYC | 2 cut(s) | 925, 1083 |
| Hsp92II | CATG | 4 cut(s) | 75, 800, 836, 1076 |
| HspAI | GCGC | 3 cut(s) | 925, 1083, 1124 |
| KasI | GGCGCC | 2 cut(s) | 924, 1082 |
| KflI | GGGWCCC | 2 cut(s) | 111, 137 |
| Kpn2I | TCCGGA | 1 cut(s) | 889 |
| Ksp22I | TGATCA | 1 cut(s) | 1180 |
| Kzo9I | GATC | 8 cut(s) | 274, 684, 783, 866, 970, 1180, 1276, 1288 |
| LmnI | GCTCC | 2 cut(s) | 337, 809 |
| LweI | GCATC | 2 cut(s) | 682, 1102 |
| MaeI | CTAG | 5 cut(s) | 348, 422, 429, 566, 1292 |
| MaeII | ACGT | 7 cut(s) | 35, 97, 149, 174, 438, 540, 1039 |
| MaeIII | GTNAC | 4 cut(s) | 308, 545, 998, 1219 |
| MalI | GATC | 8 cut(s) | 276, 686, 785, 868, 972, 1182, 1278, 1290 |
| MboI | GATC | 8 cut(s) | 274, 684, 783, 866, 970, 1180, 1276, 1288 |
| MboII | GAAGA | 5 cut(s) | 721, 862, 1223, 1286, 1295 |
| MflI | RGATCY | 1 cut(s) | 866 |
| MhlI | GDGCHC | 3 cut(s) | 804, 1192, 1207 |
| MlsI | TGGCCA | 1 cut(s) | 1071 |
| MluCI | AATT | 5 cut(s) | 280, 320, 668, 859, 898 |
| MluNI | TGGCCA | 1 cut(s) | 1071 |
| Mly113I | GGCGCC | 2 cut(s) | 925, 1083 |
| MlyI | GAGTC | 3 cut(s) | 517, 542, 706 |
| MmeI | TCCRAC | 1 cut(s) | 285 |
| Mox20I | TGGCCA | 1 cut(s) | 1071 |
| MroI | TCCGGA | 1 cut(s) | 889 |
| MroXI | GAANNNNTTC | 1 cut(s) | 633 |
| MscI | TGGCCA | 1 cut(s) | 1071 |
| MseI | TTAA | 2 cut(s) | 654, 662 |
| MslI | CAYNNNNRTG | 4 cut(s) | 70, 518, 1077, 1107 |
| Msp20I | TGGCCA | 1 cut(s) | 1071 |
| MspA1I | CMGCKG | 1 cut(s) | 188 |
| MspI | CCGG | 5 cut(s) | 203, 214, 225, 286, 890 |
| MspR9I | CCNGG | 3 cut(s) | 214, 410, 434 |
| MvaI | CCWGG | 2 cut(s) | 410, 434 |
| NarI | GGCGCC | 2 cut(s) | 925, 1083 |
| NciI | CCSGG | 1 cut(s) | 214 |
| NdeII | GATC | 8 cut(s) | 274, 684, 783, 866, 970, 1180, 1276, 1288 |
| NlaIII | CATG | 4 cut(s) | 75, 800, 836, 1076 |
| NlaIV | GGNNCC | 9 cut(s) | 49, 112, 113, 138, 139, 163, 926, 1025, 1084 |
| NmuCI | GTSAC | 2 cut(s) | 545, 1219 |
| PagI | TCATGA | 1 cut(s) | 796 |
| PdmI | GAANNNNTTC | 1 cut(s) | 633 |
| PfeI | GAWTC | 4 cut(s) | 405, 418, 762, 893 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1135 |
| PfoI | TCCNGGA | 1 cut(s) | 408 |
| PleI | GAGTC | 3 cut(s) | 517, 542, 706 |
| PluTI | GGCGCC | 2 cut(s) | 928, 1086 |
| PpsI | GAGTC | 3 cut(s) | 517, 542, 706 |
| PpuMI | RGGWCCY | 4 cut(s) | 47, 111, 137, 162 |
| Psp124BI | GAGCTC | 2 cut(s) | 804, 1207 |
| Psp5II | RGGWCCY | 4 cut(s) | 47, 111, 137, 162 |
| Psp6I | CCWGG | 2 cut(s) | 408, 432 |
| PspEI | GGTNACC | 1 cut(s) | 998 |
| PspGI | CCWGG | 2 cut(s) | 408, 432 |
| PspN4I | GGNNCC | 9 cut(s) | 49, 112, 113, 138, 139, 163, 926, 1025, 1084 |
| PspPI | GGNCC | 7 cut(s) | 10, 24, 47, 111, 137, 162, 238 |
| PspPPI | RGGWCCY | 4 cut(s) | 47, 111, 137, 162 |
| PsuI | RGATCY | 1 cut(s) | 866 |
| RseI | CAYNNNNRTG | 4 cut(s) | 70, 518, 1077, 1107 |
| SacI | GAGCTC | 2 cut(s) | 804, 1207 |
| SaqAI | TTAA | 2 cut(s) | 654, 662 |
| Sau3AI | GATC | 8 cut(s) | 274, 684, 783, 866, 970, 1180, 1276, 1288 |
| Sau96I | GGNCC | 7 cut(s) | 10, 24, 47, 111, 137, 162, 238 |
| SchI | GAGTC | 3 cut(s) | 517, 542, 706 |
| ScrFI | CCNGG | 3 cut(s) | 214, 410, 434 |
| SduI | GDGCHC | 3 cut(s) | 804, 1192, 1207 |
| SfaNI | GCATC | 2 cut(s) | 682, 1102 |
| SfoI | GGCGCC | 2 cut(s) | 926, 1084 |
| SinI | GGWCC | 4 cut(s) | 47, 111, 137, 162 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 70, 518, 1077, 1107 |
| SmlI | CTYRAG | 2 cut(s) | 392, 459 |
| SmoI | CTYRAG | 2 cut(s) | 392, 459 |
| Sse9I | AATT | 5 cut(s) | 280, 320, 668, 859, 898 |
| SsiI | CCGC | 4 cut(s) | 188, 589, 1003, 1224 |
| SspDI | GGCGCC | 2 cut(s) | 924, 1082 |
| SspMI | CTAG | 5 cut(s) | 348, 422, 429, 566, 1292 |
| SstI | GAGCTC | 2 cut(s) | 804, 1207 |
| StyD4I | CCNGG | 3 cut(s) | 212, 408, 432 |
| TaaI | ACNGT | 2 cut(s) | 448, 820 |
| TaiI | ACGT | 7 cut(s) | 38, 100, 152, 177, 441, 543, 1042 |
| TaqI | TCGA | 4 cut(s) | 249, 299, 760, 863 |
| TasI | AATT | 5 cut(s) | 280, 320, 668, 859, 898 |
| TfiI | GAWTC | 4 cut(s) | 405, 418, 762, 893 |
| Tru1I | TTAA | 2 cut(s) | 654, 662 |
| Tru9I | TTAA | 2 cut(s) | 654, 662 |
| TscAI | CASTG | 5 cut(s) | 58, 72, 88, 96, 148 |
| TseFI | GTSAC | 2 cut(s) | 545, 1219 |
| Tsp45I | GTSAC | 2 cut(s) | 545, 1219 |
| TspDTI | ATGAA | 1 cut(s) | 785 |
| TspGWI | ACGGA | 4 cut(s) | 30, 796, 859, 1036 |
| TspRI | CASTG | 5 cut(s) | 58, 72, 88, 96, 148 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1135 |
| VpaK11BI | GGWCC | 4 cut(s) | 47, 111, 137, 162 |
| XapI | RAATTY | 2 cut(s) | 280, 668 |
| XbaI | TCTAGA | 2 cut(s) | 421, 1291 |
| XmiI | GTMKAC | 1 cut(s) | 953 |
| XmnI | GAANNNNTTC | 1 cut(s) | 633 |
| XspI | CTAG | 5 cut(s) | 348, 422, 429, 566, 1292 |