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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 749, 824, 905 |
| AccII | CGCG | 1 cut(s) | 1074 |
| AccIII | TCCGGA | 1 cut(s) | 649 |
| AciI | CCGC | 3 cut(s) | 79, 670, 1074 |
| AclI | AACGTT | 1 cut(s) | 312 |
| AcoI | YGGCCR | 1 cut(s) | 736 |
| AcsI | RAATTY | 2 cut(s) | 102, 428 |
| AcyI | GRCGYC | 4 cut(s) | 750, 876, 888, 906 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 850, 854 |
| AgsI | TTSAA | 3 cut(s) | 376, 787, 941 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 961 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 5 cut(s) | 124, 155, 161, 562, 572 |
| AluI | AGCT | 5 cut(s) | 124, 155, 161, 562, 572 |
| Alw21I | GWGCWC | 1 cut(s) | 564 |
| Alw26I | GTCTC | 3 cut(s) | 292, 496, 1074 |
| Aor13HI | TCCGGA | 1 cut(s) | 649 |
| AoxI | GGCC | 2 cut(s) | 93, 736 |
| ApeKI | GCWGC | 2 cut(s) | 179, 920 |
| ApoI | RAATTY | 2 cut(s) | 102, 428 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 405, 1004 |
| AspA2I | CCTAGG | 1 cut(s) | 848 |
| AspLEI | GCGC | 4 cut(s) | 752, 793, 908, 1114 |
| AsuHPI | GGTGA | 3 cut(s) | 911, 919, 1118 |
| AvrII | CCTAGG | 1 cut(s) | 848 |
| BalI | TGGCCA | 1 cut(s) | 738 |
| BanI | GGYRCC | 3 cut(s) | 749, 824, 905 |
| BanII | GRGCYC | 1 cut(s) | 564 |
| BbsI | GAAGAC | 3 cut(s) | 273, 476, 1007 |
| Bbv12I | GWGCWC | 1 cut(s) | 564 |
| BbvI | GCAGC | 2 cut(s) | 191, 907 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 515, 549, 613, 647 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 3 cut(s) | 292, 496, 1074 |
| BfaI | CTAG | 4 cut(s) | 51, 338, 849, 984 |
| BfoI | RGCGCY | 3 cut(s) | 753, 794, 909 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BglII | AGATCT | 1 cut(s) | 626 |
| BisI | GCNGC | 2 cut(s) | 180, 921 |
| BlnI | CCTAGG | 1 cut(s) | 848 |
| BlpI | GCTNAGC | 1 cut(s) | 125 |
| BlsI | GCNGC | 2 cut(s) | 181, 922 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 961 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 4 cut(s) | 692, 751, 826, 907 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 2 cut(s) | 907, 1099 |
| BpiI | GAAGAC | 3 cut(s) | 273, 476, 1007 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 125 |
| BpuEI | CTTGAG | 2 cut(s) | 104, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaHI | GRCGYC | 4 cut(s) | 750, 876, 888, 906 |
| BsaI | GGTCTC | 2 cut(s) | 292, 1074 |
| BsaJI | CCNNGG | 2 cut(s) | 848, 879 |
| BsaWI | WCCGGW | 1 cut(s) | 649 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 850, 854 |
| Bse1I | ACTGG | 2 cut(s) | 49, 244 |
| Bse3DI | GCAATG | 1 cut(s) | 978 |
| BseAI | TCCGGA | 1 cut(s) | 649 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseDI | CCNNGG | 2 cut(s) | 848, 879 |
| BseGI | GGATG | 5 cut(s) | 210, 238, 600, 889, 1128 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 850, 854 |
| BseMI | GCAATG | 1 cut(s) | 978 |
| BseNI | ACTGG | 2 cut(s) | 49, 244 |
| BseXI | GCAGC | 2 cut(s) | 191, 907 |
| Bsh1236I | CGCG | 1 cut(s) | 1074 |
| BshFI | GGCC | 2 cut(s) | 95, 738 |
| BshNI | GGYRCC | 3 cut(s) | 749, 824, 905 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiHKAI | GWGCWC | 1 cut(s) | 564 |
| BsiSI | CCGG | 1 cut(s) | 650 |
| BslFI | GGGAC | 2 cut(s) | 848, 1039 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 850, 854 |
| BsmAI | GTCTC | 3 cut(s) | 292, 496, 1074 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| BsmFI | GGGAC | 2 cut(s) | 848, 1039 |
| BsnI | GGCC | 2 cut(s) | 95, 738 |
| Bso31I | GGTCTC | 2 cut(s) | 292, 1074 |
| Bsp1286I | GDGCHC | 1 cut(s) | 564 |
| Bsp13I | TCCGGA | 1 cut(s) | 649 |
| Bsp143I | GATC | 2 cut(s) | 543, 626 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 125 |
| Bsp19I | CCATGG | 1 cut(s) | 879 |
| BspACI | CCGC | 3 cut(s) | 79, 670, 1074 |
| BspANI | GGCC | 2 cut(s) | 95, 738 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspEI | TCCGGA | 1 cut(s) | 649 |
| BspFNI | CGCG | 1 cut(s) | 1074 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 4 cut(s) | 692, 751, 826, 907 |
| BspT107I | GGYRCC | 3 cut(s) | 749, 824, 905 |
| BspTNI | GGTCTC | 2 cut(s) | 292, 1074 |
| BsrDI | GCAATG | 1 cut(s) | 978 |
| BsrI | ACTGG | 2 cut(s) | 49, 244 |
| BssECI | CCNNGG | 2 cut(s) | 848, 879 |
| BssMI | GATC | 2 cut(s) | 543, 626 |
| BssNI | GRCGYC | 4 cut(s) | 750, 876, 888, 906 |
| BssT1I | CCWWGG | 2 cut(s) | 848, 879 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 1 cut(s) | 691 |
| BstACI | GRCGYC | 4 cut(s) | 750, 876, 888, 906 |
| BstC8I | GCNNGC | 2 cut(s) | 153, 856 |
| BstDEI | CTNAG | 4 cut(s) | 125, 184, 510, 762 |
| BstDSI | CCRYGG | 1 cut(s) | 879 |
| BstF5I | GGATG | 5 cut(s) | 210, 238, 600, 889, 1128 |
| BstFNI | CGCG | 1 cut(s) | 1074 |
| BstH2I | RGCGCY | 3 cut(s) | 753, 794, 909 |
| BstHHI | GCGC | 4 cut(s) | 752, 793, 908, 1114 |
| BstKTI | GATC | 2 cut(s) | 546, 629 |
| BstMAI | GTCTC | 3 cut(s) | 292, 496, 1074 |
| BstMBI | GATC | 2 cut(s) | 543, 626 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 640, 788 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstUI | CGCG | 1 cut(s) | 1074 |
| BstV1I | GCAGC | 2 cut(s) | 191, 907 |
| BstV2I | GAAGAC | 3 cut(s) | 273, 476, 1007 |
| BstX2I | RGATCY | 1 cut(s) | 626 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 746 |
| BstYI | RGATCY | 1 cut(s) | 626 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| BsuRI | GGCC | 2 cut(s) | 95, 738 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtgI | CCRYGG | 1 cut(s) | 879 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 5 cut(s) | 210, 238, 600, 889, 1128 |
| Cac8I | GCNNGC | 2 cut(s) | 153, 856 |
| CciI | TCATGA | 1 cut(s) | 556 |
| CfoI | GCGC | 4 cut(s) | 752, 793, 908, 1114 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| CseI | GACGC | 3 cut(s) | 788, 877, 884 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 8 cut(s) | 557, 593, 687, 740, 872, 880, 896, 1051 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 4 cut(s) | 125, 184, 510, 762 |
| DinI | GGCGCC | 2 cut(s) | 751, 907 |
| DpnI | GATC | 2 cut(s) | 545, 628 |
| DpnII | GATC | 2 cut(s) | 543, 626 |
| DriI | GACNNNNNGTC | 1 cut(s) | 961 |
| EaeI | YGGCCR | 1 cut(s) | 736 |
| Eam1104I | CTCTTC | 1 cut(s) | 691 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 961 |
| EarI | CTCTTC | 1 cut(s) | 691 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 562 |
| Eco130I | CCWWGG | 2 cut(s) | 848, 879 |
| Eco24I | GRGCYC | 1 cut(s) | 564 |
| Eco31I | GGTCTC | 2 cut(s) | 292, 1074 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco53kI | GAGCTC | 1 cut(s) | 562 |
| EcoICRI | GAGCTC | 1 cut(s) | 562 |
| EcoRI | GAATTC | 2 cut(s) | 102, 428 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT14I | CCWWGG | 2 cut(s) | 848, 879 |
| EcoT38I | GRGCYC | 1 cut(s) | 564 |
| EgeI | GGCGCC | 2 cut(s) | 751, 907 |
| EheI | GGCGCC | 2 cut(s) | 751, 907 |
| ErhI | CCWWGG | 2 cut(s) | 848, 879 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaeI | CATG | 8 cut(s) | 560, 596, 690, 743, 875, 883, 899, 1054 |
| FaqI | GGGAC | 2 cut(s) | 848, 1039 |
| FatI | CATG | 8 cut(s) | 556, 592, 686, 739, 871, 879, 895, 1050 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 2 cut(s) | 180, 921 |
| FokI | GGATG | 5 cut(s) | 197, 245, 587, 896, 1115 |
| FriOI | GRGCYC | 1 cut(s) | 564 |
| Fsp4HI | GCNGC | 2 cut(s) | 180, 921 |
| FspBI | CTAG | 4 cut(s) | 51, 338, 849, 984 |
| GlaI | GCGC | 4 cut(s) | 751, 792, 907, 1113 |
| GluI | GCNGC | 2 cut(s) | 180, 921 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 3 cut(s) | 753, 794, 909 |
| HaeIII | GGCC | 2 cut(s) | 95, 738 |
| HapII | CCGG | 1 cut(s) | 650 |
| HgaI | GACGC | 3 cut(s) | 788, 877, 884 |
| HhaI | GCGC | 4 cut(s) | 752, 793, 908, 1114 |
| Hin1I | GRCGYC | 4 cut(s) | 750, 876, 888, 906 |
| Hin1II | CATG | 8 cut(s) | 560, 596, 690, 743, 875, 883, 899, 1054 |
| Hin6I | GCGC | 4 cut(s) | 750, 791, 906, 1112 |
| HinP1I | GCGC | 4 cut(s) | 750, 791, 906, 1112 |
| HincII | GTYRAC | 1 cut(s) | 704 |
| HindII | GTYRAC | 1 cut(s) | 704 |
| HindIII | AAGCTT | 2 cut(s) | 122, 159 |
| HinfI | GANTC | 7 cut(s) | 115, 220, 236, 320, 472, 522, 653 |
| HpaII | CCGG | 1 cut(s) | 650 |
| HphI | GGTGA | 3 cut(s) | 911, 919, 1118 |
| Hpy166II | GTNNAC | 3 cut(s) | 704, 838, 993 |
| Hpy188I | TCNGA | 3 cut(s) | 400, 955, 1099 |
| Hpy188III | TCNNGA | 8 cut(s) | 51, 107, 317, 332, 386, 557, 624, 650 |
| Hpy8I | GTNNAC | 3 cut(s) | 704, 838, 993 |
| HpyAV | CCTTC | 2 cut(s) | 270, 493 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 4 cut(s) | 135, 312, 706, 957 |
| HpyCH4V | TGCA | 3 cut(s) | 497, 536, 923 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 640, 788 |
| HpyF3I | CTNAG | 4 cut(s) | 125, 184, 510, 762 |
| HpySE526I | ACGT | 4 cut(s) | 135, 312, 706, 957 |
| Hsp92I | GRCGYC | 4 cut(s) | 750, 876, 888, 906 |
| Hsp92II | CATG | 8 cut(s) | 560, 596, 690, 743, 875, 883, 899, 1054 |
| HspAI | GCGC | 4 cut(s) | 750, 791, 906, 1112 |
| KasI | GGCGCC | 2 cut(s) | 749, 905 |
| Kpn2I | TCCGGA | 1 cut(s) | 649 |
| Kzo9I | GATC | 2 cut(s) | 543, 626 |
| LmnI | GCTCC | 2 cut(s) | 34, 569 |
| Lsp1109I | GCAGC | 2 cut(s) | 191, 907 |
| LweI | GCATC | 2 cut(s) | 907, 1099 |
| MaeI | CTAG | 4 cut(s) | 51, 338, 849, 984 |
| MaeII | ACGT | 4 cut(s) | 135, 312, 706, 957 |
| MaeIII | GTNAC | 4 cut(s) | 5, 317, 529, 665 |
| MalI | GATC | 2 cut(s) | 545, 628 |
| MboI | GATC | 2 cut(s) | 543, 626 |
| MboII | GAAGA | 6 cut(s) | 275, 278, 308, 481, 708, 1012 |
| MfeI | CAATTG | 1 cut(s) | 966 |
| MflI | RGATCY | 1 cut(s) | 626 |
| MhlI | GDGCHC | 1 cut(s) | 564 |
| MlsI | TGGCCA | 1 cut(s) | 738 |
| MluCI | AATT | 6 cut(s) | 17, 102, 428, 619, 658, 966 |
| MluNI | TGGCCA | 1 cut(s) | 738 |
| Mly113I | GGCGCC | 2 cut(s) | 750, 906 |
| MlyI | GAGTC | 3 cut(s) | 214, 314, 466 |
| MmeI | TCCRAC | 1 cut(s) | 1015 |
| MnlI | CCTC | 8 cut(s) | 181, 368, 692, 712, 716, 742, 804, 841 |
| Mox20I | TGGCCA | 1 cut(s) | 738 |
| MroI | TCCGGA | 1 cut(s) | 649 |
| MroXI | GAANNNNTTC | 2 cut(s) | 405, 1004 |
| MscI | TGGCCA | 1 cut(s) | 738 |
| MseI | TTAA | 2 cut(s) | 414, 422 |
| MslI | CAYNNNNRTG | 8 cut(s) | 215, 231, 605, 744, 774, 897, 900, 1063 |
| Msp20I | TGGCCA | 1 cut(s) | 738 |
| MspI | CCGG | 1 cut(s) | 650 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MunI | CAATTG | 1 cut(s) | 966 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MvnI | CGCG | 1 cut(s) | 1074 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 640, 788 |
| NarI | GGCGCC | 2 cut(s) | 750, 906 |
| NcoI | CCATGG | 1 cut(s) | 879 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 2 cut(s) | 543, 626 |
| NlaIII | CATG | 8 cut(s) | 560, 596, 690, 743, 875, 883, 899, 1054 |
| NlaIV | GGNNCC | 4 cut(s) | 692, 751, 826, 907 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PdmI | GAANNNNTTC | 2 cut(s) | 405, 1004 |
| PfeI | GAWTC | 4 cut(s) | 115, 236, 522, 653 |
| PkrI | GCNGC | 2 cut(s) | 181, 922 |
| PleI | GAGTC | 3 cut(s) | 214, 314, 466 |
| PluTI | GGCGCC | 2 cut(s) | 753, 909 |
| PpsI | GAGTC | 3 cut(s) | 214, 314, 466 |
| Psp124BI | GAGCTC | 1 cut(s) | 564 |
| Psp1406I | AACGTT | 1 cut(s) | 312 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 4 cut(s) | 692, 751, 826, 907 |
| PsuI | RGATCY | 1 cut(s) | 626 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 8 cut(s) | 215, 231, 605, 744, 774, 897, 900, 1063 |
| SacI | GAGCTC | 1 cut(s) | 564 |
| SaqAI | TTAA | 2 cut(s) | 414, 422 |
| SatI | GCNGC | 2 cut(s) | 180, 921 |
| Sau3AI | GATC | 2 cut(s) | 543, 626 |
| SchI | GAGTC | 3 cut(s) | 214, 314, 466 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 1 cut(s) | 564 |
| SfaNI | GCATC | 2 cut(s) | 907, 1099 |
| SfoI | GGCGCC | 2 cut(s) | 751, 907 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 215, 231, 605, 744, 774, 897, 900, 1063 |
| SmlI | CTYRAG | 2 cut(s) | 119, 156 |
| SmoI | CTYRAG | 2 cut(s) | 119, 156 |
| Sse9I | AATT | 6 cut(s) | 17, 102, 428, 619, 658, 966 |
| SsiI | CCGC | 3 cut(s) | 79, 670, 1074 |
| SspDI | GGCGCC | 2 cut(s) | 749, 905 |
| SspMI | CTAG | 4 cut(s) | 51, 338, 849, 984 |
| SstI | GAGCTC | 1 cut(s) | 564 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| StyI | CCWWGG | 2 cut(s) | 848, 879 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 4 cut(s) | 138, 315, 709, 960 |
| TaqI | TCGA | 6 cut(s) | 294, 520, 525, 623, 998, 1008 |
| TasI | AATT | 6 cut(s) | 17, 102, 428, 619, 658, 966 |
| TfiI | GAWTC | 4 cut(s) | 115, 236, 522, 653 |
| Tru1I | TTAA | 2 cut(s) | 414, 422 |
| Tru9I | TTAA | 2 cut(s) | 414, 422 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| TseI | GCWGC | 2 cut(s) | 179, 920 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 5 cut(s) | 272, 276, 545, 590, 1067 |
| XapI | RAATTY | 2 cut(s) | 102, 428 |
| XbaI | TCTAGA | 1 cut(s) | 50 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 851, 899 |
| XmaJI | CCTAGG | 1 cut(s) | 848 |
| XmnI | GAANNNNTTC | 2 cut(s) | 405, 1004 |
| XspI | CTAG | 4 cut(s) | 51, 338, 849, 984 |