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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 402 |
| AccB1I | GGYRCC | 1 cut(s) | 539 |
| AciI | CCGC | 3 cut(s) | 439, 452, 563 |
| AclWI | GGATC | 4 cut(s) | 335, 632, 637, 963 |
| AcuI | CTGAAG | 1 cut(s) | 330 |
| AcvI | CACGTG | 2 cut(s) | 461, 479 |
| AcyI | GRCGYC | 1 cut(s) | 7 |
| AdeI | CACNNNGTG | 2 cut(s) | 464, 578 |
| AfaI | GTAC | 2 cut(s) | 307, 873 |
| AfeI | AGCGCT | 1 cut(s) | 75 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 480, 553 |
| AflIII | ACRYGT | 2 cut(s) | 458, 476 |
| AgsI | TTSAA | 6 cut(s) | 124, 131, 160, 408, 925, 979 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 160 |
| AhlI | ACTAGT | 1 cut(s) | 866 |
| AjiI | CACGTC | 1 cut(s) | 883 |
| AjnI | CCWGG | 1 cut(s) | 971 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 4 cut(s) | 64, 244, 346, 368 |
| AluI | AGCT | 4 cut(s) | 64, 244, 346, 368 |
| Alw21I | GWGCWC | 3 cut(s) | 87, 574, 583 |
| Alw26I | GTCTC | 4 cut(s) | 667, 765, 791, 889 |
| Alw44I | GTGCAC | 2 cut(s) | 570, 579 |
| AlwI | GGATC | 4 cut(s) | 335, 632, 637, 963 |
| Aor51HI | AGCGCT | 1 cut(s) | 75 |
| AoxI | GGCC | 2 cut(s) | 410, 949 |
| ApaLI | GTGCAC | 2 cut(s) | 570, 579 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 831 |
| AspA2I | CCTAGG | 1 cut(s) | 551 |
| AspLEI | GCGC | 2 cut(s) | 76, 147 |
| AspS9I | GGNCC | 2 cut(s) | 411, 731 |
| AvaII | GGWCC | 1 cut(s) | 731 |
| AvrII | CCTAGG | 1 cut(s) | 551 |
| BaeGI | GKGCMC | 2 cut(s) | 574, 583 |
| BanI | GGYRCC | 1 cut(s) | 539 |
| BauI | CACGAG | 2 cut(s) | 331, 389 |
| BbrPI | CACGTG | 2 cut(s) | 461, 479 |
| BbsI | GAAGAC | 1 cut(s) | 260 |
| Bbv12I | GWGCWC | 3 cut(s) | 87, 574, 583 |
| BccI | CCATC | 1 cut(s) | 682 |
| BceAI | ACGGC | 1 cut(s) | 492 |
| BciT130I | CCWGG | 1 cut(s) | 973 |
| BciVI | GTATCC | 2 cut(s) | 448, 509 |
| BclI | TGATCA | 2 cut(s) | 645, 738 |
| BcoDI | GTCTC | 4 cut(s) | 667, 765, 791, 889 |
| BcuI | ACTAGT | 1 cut(s) | 866 |
| BfaI | CTAG | 4 cut(s) | 77, 504, 552, 867 |
| BfmI | CTRYAG | 1 cut(s) | 363 |
| BfoI | RGCGCY | 1 cut(s) | 77 |
| BfuI | GTATCC | 2 cut(s) | 448, 509 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 719 |
| BglII | AGATCT | 1 cut(s) | 849 |
| BlnI | CCTAGG | 1 cut(s) | 551 |
| Bme1390I | CCNGG | 1 cut(s) | 973 |
| Bme18I | GGWCC | 1 cut(s) | 731 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 160 |
| BmgBI | CACGTC | 1 cut(s) | 883 |
| BmgT120I | GGNCC | 2 cut(s) | 411, 731 |
| BmiI | GGNNCC | 1 cut(s) | 541 |
| BmrFI | CCNGG | 1 cut(s) | 973 |
| BmsI | GCATC | 1 cut(s) | 802 |
| BpiI | GAAGAC | 1 cut(s) | 260 |
| Bsa29I | ATCGAT | 1 cut(s) | 622 |
| BsaAI | YACGTR | 2 cut(s) | 461, 479 |
| BsaBI | GATNNNNATC | 1 cut(s) | 628 |
| BsaHI | GRCGYC | 1 cut(s) | 7 |
| BsaI | GGTCTC | 1 cut(s) | 889 |
| BsaJI | CCNNGG | 1 cut(s) | 551 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 26, 56, 475, 505, 532, 562 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 480, 553 |
| Bse1I | ACTGG | 1 cut(s) | 714 |
| Bse3DI | GCAATG | 1 cut(s) | 100 |
| Bse8I | GATNNNNATC | 1 cut(s) | 628 |
| BseBI | CCWGG | 1 cut(s) | 973 |
| BseCI | ATCGAT | 1 cut(s) | 622 |
| BseDI | CCNNGG | 1 cut(s) | 551 |
| BseGI | GGATG | 1 cut(s) | 817 |
| BseJI | GATNNNNATC | 1 cut(s) | 628 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 480, 553 |
| BseMI | GCAATG | 1 cut(s) | 100 |
| BseMII | CTCAG | 2 cut(s) | 40, 360 |
| BseNI | ACTGG | 1 cut(s) | 714 |
| BseRI | GAGGAG | 1 cut(s) | 101 |
| BseSI | GKGCMC | 2 cut(s) | 574, 583 |
| BshFI | GGCC | 2 cut(s) | 412, 951 |
| BshNI | GGYRCC | 1 cut(s) | 539 |
| BshVI | ATCGAT | 1 cut(s) | 622 |
| BsiHKAI | GWGCWC | 3 cut(s) | 87, 574, 583 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 480, 553 |
| BsmAI | GTCTC | 4 cut(s) | 667, 765, 791, 889 |
| BsmBI | CGTCTC | 1 cut(s) | 765 |
| BsmI | GAATGC | 2 cut(s) | 58, 934 |
| BsnI | GGCC | 2 cut(s) | 412, 951 |
| Bso31I | GGTCTC | 1 cut(s) | 889 |
| Bsp1286I | GDGCHC | 3 cut(s) | 87, 574, 583 |
| Bsp1407I | TGTACA | 1 cut(s) | 871 |
| Bsp143I | GATC | 8 cut(s) | 45, 327, 629, 637, 645, 738, 849, 968 |
| BspACI | CCGC | 3 cut(s) | 439, 452, 563 |
| BspANI | GGCC | 2 cut(s) | 412, 951 |
| BspCNI | CTCAG | 2 cut(s) | 39, 361 |
| BspDI | ATCGAT | 1 cut(s) | 622 |
| BspHI | TCATGA | 1 cut(s) | 763 |
| BspLI | GGNNCC | 1 cut(s) | 541 |
| BspPI | GGATC | 4 cut(s) | 335, 632, 637, 963 |
| BspQI | GCTCTTC | 1 cut(s) | 75 |
| BspT107I | GGYRCC | 1 cut(s) | 539 |
| BspTNI | GGTCTC | 1 cut(s) | 889 |
| BsrDI | GCAATG | 1 cut(s) | 100 |
| BsrGI | TGTACA | 1 cut(s) | 871 |
| BsrI | ACTGG | 1 cut(s) | 714 |
| BssECI | CCNNGG | 1 cut(s) | 551 |
| BssMI | GATC | 8 cut(s) | 45, 327, 629, 637, 645, 738, 849, 968 |
| BssNI | GRCGYC | 1 cut(s) | 7 |
| BssSI | CACGAG | 2 cut(s) | 331, 389 |
| BssT1I | CCWWGG | 1 cut(s) | 551 |
| Bst2BI | CACGAG | 2 cut(s) | 331, 389 |
| Bst2UI | CCWGG | 1 cut(s) | 973 |
| Bst4CI | ACNGT | 1 cut(s) | 305 |
| Bst6I | CTCTTC | 2 cut(s) | 75, 701 |
| BstACI | GRCGYC | 1 cut(s) | 7 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 578 |
| BstAUI | TGTACA | 1 cut(s) | 871 |
| BstBAI | YACGTR | 2 cut(s) | 461, 479 |
| BstC8I | GCNNGC | 1 cut(s) | 563 |
| BstDEI | CTNAG | 5 cut(s) | 26, 369, 423, 702, 837 |
| BstF5I | GGATG | 1 cut(s) | 817 |
| BstH2I | RGCGCY | 1 cut(s) | 77 |
| BstHHI | GCGC | 2 cut(s) | 76, 147 |
| BstKTI | GATC | 8 cut(s) | 48, 330, 632, 640, 648, 741, 852, 971 |
| BstMAI | GTCTC | 4 cut(s) | 667, 765, 791, 889 |
| BstMBI | GATC | 8 cut(s) | 45, 327, 629, 637, 645, 738, 849, 968 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 82, 578, 719 |
| BstNI | CCWGG | 1 cut(s) | 973 |
| BstSCI | CCNGG | 1 cut(s) | 971 |
| BstSFI | CTRYAG | 1 cut(s) | 363 |
| BstSLI | GKGCMC | 2 cut(s) | 574, 583 |
| BstV2I | GAAGAC | 1 cut(s) | 260 |
| BstX2I | RGATCY | 2 cut(s) | 849, 968 |
| BstYI | RGATCY | 2 cut(s) | 849, 968 |
| Bsu15I | ATCGAT | 1 cut(s) | 622 |
| BsuI | GTATCC | 2 cut(s) | 448, 509 |
| BsuRI | GGCC | 2 cut(s) | 412, 951 |
| BsuTUI | ATCGAT | 1 cut(s) | 622 |
| BtrI | CACGTC | 1 cut(s) | 883 |
| BtsCI | GGATG | 1 cut(s) | 817 |
| Cac8I | GCNNGC | 1 cut(s) | 563 |
| CciI | TCATGA | 1 cut(s) | 763 |
| CfoI | GCGC | 2 cut(s) | 76, 147 |
| Cfr13I | GGNCC | 2 cut(s) | 411, 731 |
| ClaI | ATCGAT | 1 cut(s) | 622 |
| CseI | GACGC | 1 cut(s) | 15 |
| Csp6I | GTAC | 2 cut(s) | 306, 872 |
| CviAII | CATG | 4 cut(s) | 205, 377, 764, 875 |
| CviQI | GTAC | 2 cut(s) | 306, 872 |
| DdeI | CTNAG | 5 cut(s) | 26, 369, 423, 702, 837 |
| DpnI | GATC | 8 cut(s) | 47, 329, 631, 639, 647, 740, 851, 970 |
| DpnII | GATC | 8 cut(s) | 45, 327, 629, 637, 645, 738, 849, 968 |
| DraIII | CACNNNGTG | 2 cut(s) | 464, 578 |
| DriI | GACNNNNNGTC | 1 cut(s) | 160 |
| Eam1104I | CTCTTC | 2 cut(s) | 75, 701 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 160 |
| EarI | CTCTTC | 2 cut(s) | 75, 701 |
| Eco130I | CCWWGG | 1 cut(s) | 551 |
| Eco31I | GGTCTC | 1 cut(s) | 889 |
| Eco47I | GGWCC | 1 cut(s) | 731 |
| Eco47III | AGCGCT | 1 cut(s) | 75 |
| Eco57I | CTGAAG | 1 cut(s) | 330 |
| Eco72I | CACGTG | 2 cut(s) | 461, 479 |
| EcoRII | CCWGG | 1 cut(s) | 971 |
| EcoT14I | CCWWGG | 1 cut(s) | 551 |
| ErhI | CCWWGG | 1 cut(s) | 551 |
| Esp3I | CGTCTC | 1 cut(s) | 765 |
| FaeI | CATG | 4 cut(s) | 208, 380, 767, 878 |
| FatI | CATG | 4 cut(s) | 204, 376, 763, 874 |
| FauI | CCCGC | 1 cut(s) | 570 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FbaI | TGATCA | 2 cut(s) | 645, 738 |
| FokI | GGATG | 1 cut(s) | 824 |
| FspBI | CTAG | 4 cut(s) | 77, 504, 552, 867 |
| GlaI | GCGC | 2 cut(s) | 75, 146 |
| HaeII | RGCGCY | 1 cut(s) | 77 |
| HaeIII | GGCC | 2 cut(s) | 412, 951 |
| HgaI | GACGC | 1 cut(s) | 15 |
| HhaI | GCGC | 2 cut(s) | 76, 147 |
| Hin1I | GRCGYC | 1 cut(s) | 7 |
| Hin1II | CATG | 4 cut(s) | 208, 380, 767, 878 |
| Hin6I | GCGC | 2 cut(s) | 74, 145 |
| HinP1I | GCGC | 2 cut(s) | 74, 145 |
| HinfI | GANTC | 7 cut(s) | 104, 213, 256, 616, 675, 692, 985 |
| Hpy166II | GTNNAC | 3 cut(s) | 572, 581, 872 |
| Hpy188I | TCNGA | 2 cut(s) | 29, 184 |
| Hpy188III | TCNNGA | 4 cut(s) | 49, 331, 391, 764 |
| Hpy8I | GTNNAC | 3 cut(s) | 572, 581, 872 |
| Hpy99I | CGWCG | 2 cut(s) | 9, 195 |
| HpyAV | CCTTC | 4 cut(s) | 118, 277, 425, 590 |
| HpyCH4III | ACNGT | 1 cut(s) | 305 |
| HpyCH4IV | ACGT | 6 cut(s) | 460, 478, 568, 577, 882, 936 |
| HpyCH4V | TGCA | 3 cut(s) | 56, 572, 581 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 82, 578, 719 |
| HpyF3I | CTNAG | 5 cut(s) | 26, 369, 423, 702, 837 |
| HpySE526I | ACGT | 6 cut(s) | 460, 478, 568, 577, 882, 936 |
| Hsp92I | GRCGYC | 1 cut(s) | 7 |
| Hsp92II | CATG | 4 cut(s) | 208, 380, 767, 878 |
| HspAI | GCGC | 2 cut(s) | 74, 145 |
| Ksp22I | TGATCA | 2 cut(s) | 645, 738 |
| Kzo9I | GATC | 8 cut(s) | 45, 327, 629, 637, 645, 738, 849, 968 |
| LguI | GCTCTTC | 1 cut(s) | 75 |
| LpnPI | CCDG | 6 cut(s) | 129, 240, 306, 727, 958, 985 |
| LweI | GCATC | 1 cut(s) | 802 |
| MaeI | CTAG | 4 cut(s) | 77, 504, 552, 867 |
| MaeII | ACGT | 6 cut(s) | 460, 478, 568, 577, 882, 936 |
| MaeIII | GTNAC | 1 cut(s) | 229 |
| MalI | GATC | 8 cut(s) | 47, 329, 631, 639, 647, 740, 851, 970 |
| MboI | GATC | 8 cut(s) | 45, 327, 629, 637, 645, 738, 849, 968 |
| MboII | GAAGA | 4 cut(s) | 92, 265, 718, 937 |
| MfeI | CAATTG | 1 cut(s) | 633 |
| MflI | RGATCY | 2 cut(s) | 849, 968 |
| MhlI | GDGCHC | 3 cut(s) | 87, 574, 583 |
| MluCI | AATT | 9 cut(s) | 178, 246, 397, 403, 587, 633, 831, 887, 979 |
| MlyI | GAGTC | 3 cut(s) | 250, 625, 669 |
| MroXI | GAANNNNTTC | 1 cut(s) | 831 |
| MseI | TTAA | 1 cut(s) | 590 |
| MslI | CAYNNNNRTG | 3 cut(s) | 389, 609, 624 |
| MspR9I | CCNGG | 1 cut(s) | 973 |
| MunI | CAATTG | 1 cut(s) | 633 |
| Mva1269I | GAATGC | 2 cut(s) | 58, 934 |
| MvaI | CCWGG | 1 cut(s) | 973 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 82, 578, 719 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 8 cut(s) | 45, 327, 629, 637, 645, 738, 849, 968 |
| NlaIII | CATG | 4 cut(s) | 208, 380, 767, 878 |
| NlaIV | GGNNCC | 1 cut(s) | 541 |
| NmuCI | GTSAC | 1 cut(s) | 229 |
| PagI | TCATGA | 1 cut(s) | 763 |
| PciSI | GCTCTTC | 1 cut(s) | 75 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 565, 574 |
| PctI | GAATGC | 2 cut(s) | 58, 934 |
| PdmI | GAANNNNTTC | 1 cut(s) | 831 |
| PfeI | GAWTC | 4 cut(s) | 104, 213, 692, 985 |
| PleI | GAGTC | 3 cut(s) | 250, 624, 669 |
| PmaCI | CACGTG | 2 cut(s) | 461, 479 |
| PmlI | CACGTG | 2 cut(s) | 461, 479 |
| PpsI | GAGTC | 3 cut(s) | 250, 624, 669 |
| Ppu21I | YACGTR | 2 cut(s) | 461, 479 |
| PsiI | TTATAA | 1 cut(s) | 402 |
| Psp6I | CCWGG | 1 cut(s) | 971 |
| PspCI | CACGTG | 2 cut(s) | 461, 479 |
| PspGI | CCWGG | 1 cut(s) | 971 |
| PspN4I | GGNNCC | 1 cut(s) | 541 |
| PspPI | GGNCC | 2 cut(s) | 411, 731 |
| PsuI | RGATCY | 2 cut(s) | 849, 968 |
| RsaI | GTAC | 2 cut(s) | 307, 873 |
| RsaNI | GTAC | 2 cut(s) | 306, 872 |
| RseI | CAYNNNNRTG | 3 cut(s) | 389, 609, 624 |
| SapI | GCTCTTC | 1 cut(s) | 75 |
| SaqAI | TTAA | 1 cut(s) | 590 |
| Sau3AI | GATC | 8 cut(s) | 45, 327, 629, 637, 645, 738, 849, 968 |
| Sau96I | GGNCC | 2 cut(s) | 411, 731 |
| SchI | GAGTC | 3 cut(s) | 250, 625, 669 |
| ScrFI | CCNGG | 1 cut(s) | 973 |
| SduI | GDGCHC | 3 cut(s) | 87, 574, 583 |
| SfaNI | GCATC | 1 cut(s) | 802 |
| SfcI | CTRYAG | 1 cut(s) | 363 |
| SinI | GGWCC | 1 cut(s) | 731 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 389, 609, 624 |
| SpeI | ACTAGT | 1 cut(s) | 866 |
| Sse9I | AATT | 9 cut(s) | 178, 246, 397, 403, 587, 633, 831, 887, 979 |
| SsiI | CCGC | 3 cut(s) | 439, 452, 563 |
| SspI | AATATT | 2 cut(s) | 355, 772 |
| SspMI | CTAG | 4 cut(s) | 77, 504, 552, 867 |
| StyD4I | CCNGG | 1 cut(s) | 971 |
| StyI | CCWWGG | 1 cut(s) | 551 |
| TaaI | ACNGT | 1 cut(s) | 305 |
| TaiI | ACGT | 6 cut(s) | 463, 481, 571, 580, 885, 939 |
| TaqI | TCGA | 4 cut(s) | 44, 622, 686, 908 |
| TasI | AATT | 9 cut(s) | 178, 246, 397, 403, 587, 633, 831, 887, 979 |
| TatI | WGTACW | 1 cut(s) | 871 |
| TfiI | GAWTC | 4 cut(s) | 104, 213, 692, 985 |
| Tru1I | TTAA | 1 cut(s) | 590 |
| Tru9I | TTAA | 1 cut(s) | 590 |
| TseFI | GTSAC | 1 cut(s) | 229 |
| Tsp45I | GTSAC | 1 cut(s) | 229 |
| TspDTI | ATGAA | 1 cut(s) | 329 |
| TspGWI | ACGGA | 2 cut(s) | 340, 747 |
| VneI | GTGCAC | 2 cut(s) | 570, 579 |
| VpaK11BI | GGWCC | 1 cut(s) | 731 |
| XmaJI | CCTAGG | 1 cut(s) | 551 |
| XmnI | GAANNNNTTC | 1 cut(s) | 831 |
| XspI | CTAG | 4 cut(s) | 77, 504, 552, 867 |