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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 513 |
| AccB1I | GGYRCC | 2 cut(s) | 468, 626 |
| AccIII | TCCGGA | 1 cut(s) | 503 |
| AciI | CCGC | 2 cut(s) | 145, 767 |
| AclWI | GGATC | 1 cut(s) | 335 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AcyI | GRCGYC | 1 cut(s) | 627 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 464, 729 |
| AgsI | TTSAA | 2 cut(s) | 160, 664 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 4 cut(s) | 346, 356, 748, 799 |
| AluI | AGCT | 4 cut(s) | 346, 356, 748, 799 |
| Alw21I | GWGCWC | 2 cut(s) | 348, 750 |
| Alw26I | GTCTC | 1 cut(s) | 76 |
| AlwI | GGATC | 1 cut(s) | 335 |
| Aor13HI | TCCGGA | 1 cut(s) | 503 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| AspLEI | GCGC | 3 cut(s) | 455, 629, 670 |
| AxyI | CCTNAGG | 1 cut(s) | 491 |
| BaeGI | GKGCMC | 1 cut(s) | 471 |
| BanI | GGYRCC | 2 cut(s) | 468, 626 |
| BanII | GRGCYC | 2 cut(s) | 348, 750 |
| BauI | CACGAG | 1 cut(s) | 749 |
| BbsI | GAAGAC | 2 cut(s) | 57, 260 |
| Bbv12I | GWGCWC | 2 cut(s) | 348, 750 |
| BccI | CCATC | 3 cut(s) | 126, 281, 654 |
| BciVI | GTATCC | 1 cut(s) | 730 |
| BcoDI | GTCTC | 1 cut(s) | 76 |
| BfaI | CTAG | 4 cut(s) | 77, 408, 513, 835 |
| BfoI | RGCGCY | 2 cut(s) | 630, 671 |
| BfuI | GTATCC | 1 cut(s) | 730 |
| BglII | AGATCT | 1 cut(s) | 410 |
| BmiI | GGNNCC | 3 cut(s) | 470, 569, 628 |
| BmsI | GCATC | 2 cut(s) | 226, 646 |
| BpiI | GAAGAC | 2 cut(s) | 57, 260 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| BsaHI | GRCGYC | 1 cut(s) | 627 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| BsaWI | WCCGGW | 2 cut(s) | 503, 722 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 464, 729 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| Bse21I | CCTNAGG | 1 cut(s) | 491 |
| BseAI | TCCGGA | 1 cut(s) | 503 |
| BseGI | GGATG | 3 cut(s) | 22, 96, 384 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 464, 729 |
| BseMII | CTCAG | 1 cut(s) | 678 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BseSI | GKGCMC | 1 cut(s) | 471 |
| BshNI | GGYRCC | 2 cut(s) | 468, 626 |
| BsiHKAI | GWGCWC | 2 cut(s) | 348, 750 |
| BsiSI | CCGG | 2 cut(s) | 504, 723 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 464, 729 |
| BsmAI | GTCTC | 1 cut(s) | 76 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 3 cut(s) | 348, 471, 750 |
| Bsp13I | TCCGGA | 1 cut(s) | 503 |
| Bsp143I | GATC | 5 cut(s) | 228, 327, 410, 819, 831 |
| BspACI | CCGC | 2 cut(s) | 145, 767 |
| BspCNI | CTCAG | 1 cut(s) | 679 |
| BspEI | TCCGGA | 1 cut(s) | 503 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 3 cut(s) | 470, 569, 628 |
| BspPI | GGATC | 1 cut(s) | 335 |
| BspT107I | GGYRCC | 2 cut(s) | 468, 626 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssMI | GATC | 5 cut(s) | 228, 327, 410, 819, 831 |
| BssNI | GRCGYC | 1 cut(s) | 627 |
| BssSI | CACGAG | 1 cut(s) | 749 |
| Bst2BI | CACGAG | 1 cut(s) | 749 |
| Bst6I | CTCTTC | 1 cut(s) | 568 |
| BstACI | GRCGYC | 1 cut(s) | 627 |
| BstDEI | CTNAG | 6 cut(s) | 121, 294, 459, 491, 639, 687 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 462 |
| BstF5I | GGATG | 3 cut(s) | 22, 96, 384 |
| BstH2I | RGCGCY | 2 cut(s) | 630, 671 |
| BstHHI | GCGC | 3 cut(s) | 455, 629, 670 |
| BstKTI | GATC | 5 cut(s) | 231, 330, 413, 822, 834 |
| BstMAI | GTCTC | 1 cut(s) | 76 |
| BstMBI | GATC | 5 cut(s) | 228, 327, 410, 819, 831 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 475, 665, 775 |
| BstSLI | GKGCMC | 1 cut(s) | 471 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 260 |
| BstX2I | RGATCY | 1 cut(s) | 410 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 623 |
| BstYI | RGATCY | 1 cut(s) | 410 |
| Bsu36I | CCTNAGG | 1 cut(s) | 491 |
| BsuI | GTATCC | 1 cut(s) | 730 |
| BtgZI | GCGATG | 1 cut(s) | 254 |
| BtsCI | GGATG | 3 cut(s) | 22, 96, 384 |
| BtsIMutI | CAGTG | 1 cut(s) | 316 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 3 cut(s) | 455, 629, 670 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 3 cut(s) | 341, 377, 617 |
| CviJI | RGCY | 7 cut(s) | 141, 346, 356, 549, 645, 748, 799 |
| CviKI_1 | RGCY | 7 cut(s) | 141, 346, 356, 549, 645, 748, 799 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 6 cut(s) | 121, 294, 459, 491, 639, 687 |
| DinI | GGCGCC | 1 cut(s) | 628 |
| DpnI | GATC | 5 cut(s) | 230, 329, 412, 821, 833 |
| DpnII | GATC | 5 cut(s) | 228, 327, 410, 819, 831 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 513 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 513 |
| Eam1104I | CTCTTC | 1 cut(s) | 568 |
| EarI | CTCTTC | 1 cut(s) | 568 |
| Ecl136II | GAGCTC | 2 cut(s) | 346, 748 |
| Eco24I | GRGCYC | 2 cut(s) | 348, 750 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco53kI | GAGCTC | 2 cut(s) | 346, 748 |
| Eco81I | CCTNAGG | 1 cut(s) | 491 |
| EcoICRI | GAGCTC | 2 cut(s) | 346, 748 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 462 |
| EcoRI | GAATTC | 1 cut(s) | 212 |
| EcoT38I | GRGCYC | 2 cut(s) | 348, 750 |
| EgeI | GGCGCC | 1 cut(s) | 628 |
| EheI | GGCGCC | 1 cut(s) | 628 |
| FaeI | CATG | 3 cut(s) | 344, 380, 620 |
| FatI | CATG | 3 cut(s) | 340, 376, 616 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FokI | GGATG | 3 cut(s) | 29, 83, 371 |
| FriOI | GRGCYC | 2 cut(s) | 348, 750 |
| FspBI | CTAG | 4 cut(s) | 77, 408, 513, 835 |
| GlaI | GCGC | 3 cut(s) | 454, 628, 669 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 2 cut(s) | 630, 671 |
| HapII | CCGG | 2 cut(s) | 504, 723 |
| HhaI | GCGC | 3 cut(s) | 455, 629, 670 |
| Hin1I | GRCGYC | 1 cut(s) | 627 |
| Hin1II | CATG | 3 cut(s) | 344, 380, 620 |
| Hin6I | GCGC | 3 cut(s) | 453, 627, 668 |
| HinP1I | GCGC | 3 cut(s) | 453, 627, 668 |
| HincII | GTYRAC | 1 cut(s) | 581 |
| HindII | GTYRAC | 1 cut(s) | 581 |
| HinfI | GANTC | 6 cut(s) | 4, 20, 104, 306, 437, 683 |
| HpaII | CCGG | 2 cut(s) | 504, 723 |
| Hpy166II | GTNNAC | 1 cut(s) | 581 |
| Hpy188I | TCNGA | 3 cut(s) | 184, 613, 688 |
| Hpy188III | TCNNGA | 8 cut(s) | 116, 170, 341, 408, 434, 504, 708, 751 |
| Hpy8I | GTNNAC | 1 cut(s) | 581 |
| HpyAV | CCTTC | 2 cut(s) | 54, 533 |
| HpyCH4IV | ACGT | 2 cut(s) | 508, 583 |
| HpyCH4V | TGCA | 3 cut(s) | 195, 281, 320 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 475, 665, 775 |
| HpyF3I | CTNAG | 6 cut(s) | 121, 294, 459, 491, 639, 687 |
| HpySE526I | ACGT | 2 cut(s) | 508, 583 |
| Hsp92I | GRCGYC | 1 cut(s) | 627 |
| Hsp92II | CATG | 3 cut(s) | 344, 380, 620 |
| HspAI | GCGC | 3 cut(s) | 453, 627, 668 |
| KasI | GGCGCC | 1 cut(s) | 626 |
| Kpn2I | TCCGGA | 1 cut(s) | 503 |
| Kzo9I | GATC | 5 cut(s) | 228, 327, 410, 819, 831 |
| LmnI | GCTCC | 2 cut(s) | 30, 353 |
| LpnPI | CCDG | 7 cut(s) | 41, 70, 122, 129, 447, 517, 736 |
| LweI | GCATC | 2 cut(s) | 226, 646 |
| MaeI | CTAG | 4 cut(s) | 77, 408, 513, 835 |
| MaeII | ACGT | 2 cut(s) | 508, 583 |
| MaeIII | GTNAC | 3 cut(s) | 101, 313, 542 |
| MalI | GATC | 5 cut(s) | 230, 329, 412, 821, 833 |
| MboI | GATC | 5 cut(s) | 228, 327, 410, 819, 831 |
| MboII | GAAGA | 9 cut(s) | 59, 62, 92, 259, 265, 406, 585, 766, 829 |
| MflI | RGATCY | 1 cut(s) | 410 |
| MhlI | GDGCHC | 3 cut(s) | 348, 471, 750 |
| MluCI | AATT | 4 cut(s) | 212, 403, 442, 758 |
| Mly113I | GGCGCC | 1 cut(s) | 627 |
| MlyI | GAGTC | 3 cut(s) | 98, 446, 692 |
| MnlI | CCTC | 8 cut(s) | 152, 269, 458, 569, 589, 593, 619, 681 |
| MroI | TCCGGA | 1 cut(s) | 503 |
| MseI | TTAA | 2 cut(s) | 198, 206 |
| MslI | CAYNNNNRTG | 5 cut(s) | 15, 389, 621, 651, 827 |
| MspI | CCGG | 2 cut(s) | 504, 723 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 475, 665, 775 |
| NarI | GGCGCC | 1 cut(s) | 627 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 5 cut(s) | 228, 327, 410, 819, 831 |
| NlaIII | CATG | 3 cut(s) | 344, 380, 620 |
| NlaIV | GGNNCC | 3 cut(s) | 470, 569, 628 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PfeI | GAWTC | 2 cut(s) | 20, 306 |
| PleI | GAGTC | 3 cut(s) | 98, 445, 691 |
| PluTI | GGCGCC | 1 cut(s) | 630 |
| PpsI | GAGTC | 3 cut(s) | 98, 445, 691 |
| Psp124BI | GAGCTC | 2 cut(s) | 348, 750 |
| PspN4I | GGNNCC | 3 cut(s) | 470, 569, 628 |
| PsuI | RGATCY | 1 cut(s) | 410 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 5 cut(s) | 15, 389, 621, 651, 827 |
| SacI | GAGCTC | 2 cut(s) | 348, 750 |
| SaqAI | TTAA | 2 cut(s) | 198, 206 |
| Sau3AI | GATC | 5 cut(s) | 228, 327, 410, 819, 831 |
| SchI | GAGTC | 3 cut(s) | 98, 446, 692 |
| SduI | GDGCHC | 3 cut(s) | 348, 471, 750 |
| SfaNI | GCATC | 2 cut(s) | 226, 646 |
| SfoI | GGCGCC | 1 cut(s) | 628 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 15, 389, 621, 651, 827 |
| Sse9I | AATT | 4 cut(s) | 212, 403, 442, 758 |
| SsiI | CCGC | 2 cut(s) | 145, 767 |
| SspDI | GGCGCC | 1 cut(s) | 626 |
| SspMI | CTAG | 4 cut(s) | 77, 408, 513, 835 |
| SstI | GAGCTC | 2 cut(s) | 348, 750 |
| TaiI | ACGT | 2 cut(s) | 511, 586 |
| TaqI | TCGA | 2 cut(s) | 304, 709 |
| TasI | AATT | 4 cut(s) | 212, 403, 442, 758 |
| TfiI | GAWTC | 2 cut(s) | 20, 306 |
| Tru1I | TTAA | 2 cut(s) | 198, 206 |
| Tru9I | TTAA | 2 cut(s) | 198, 206 |
| TscAI | CASTG | 1 cut(s) | 316 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| TspDTI | ATGAA | 4 cut(s) | 56, 60, 329, 374 |
| TspGWI | ACGGA | 3 cut(s) | 89, 340, 580 |
| TspRI | CASTG | 1 cut(s) | 316 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 462 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XbaI | TCTAGA | 1 cut(s) | 407 |
| XspI | CTAG | 4 cut(s) | 77, 408, 513, 835 |