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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 119 |
| AccII | CGCG | 2 cut(s) | 190, 222 |
| AccIII | TCCGGA | 1 cut(s) | 868 |
| AciI | CCGC | 8 cut(s) | 114, 119, 136, 139, 188, 220, 331, 613 |
| AclI | AACGTT | 1 cut(s) | 160 |
| AclWI | GGATC | 2 cut(s) | 218, 840 |
| AcsI | RAATTY | 1 cut(s) | 680 |
| AgsI | TTSAA | 1 cut(s) | 548 |
| AjnI | CCWGG | 2 cut(s) | 357, 381 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 540, 572 |
| AluBI | AGCT | 5 cut(s) | 182, 413, 781, 791, 803 |
| AluI | AGCT | 5 cut(s) | 182, 413, 781, 791, 803 |
| Alw21I | GWGCWC | 1 cut(s) | 108 |
| Alw26I | GTCTC | 4 cut(s) | 200, 544, 684, 715 |
| Alw44I | GTGCAC | 1 cut(s) | 104 |
| AlwI | GGATC | 2 cut(s) | 218, 840 |
| Aor13HI | TCCGGA | 1 cut(s) | 868 |
| AoxI | GGCC | 1 cut(s) | 120 |
| ApaLI | GTGCAC | 1 cut(s) | 104 |
| ApeKI | GCWGC | 3 cut(s) | 127, 238, 431 |
| ApoI | RAATTY | 1 cut(s) | 680 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 657 |
| AspS9I | GGNCC | 1 cut(s) | 121 |
| AsuNHI | GCTAGC | 1 cut(s) | 178 |
| BaeGI | GKGCMC | 2 cut(s) | 108, 154 |
| BbsI | GAAGAC | 1 cut(s) | 525 |
| Bbv12I | GWGCWC | 1 cut(s) | 108 |
| BbvI | GCAGC | 3 cut(s) | 139, 225, 443 |
| BccI | CCATC | 4 cut(s) | 344, 467, 594, 715 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 55, 89, 136, 170, 220, 254 |
| BciT130I | CCWGG | 2 cut(s) | 359, 383 |
| BciVI | GTATCC | 1 cut(s) | 355 |
| BcoDI | GTCTC | 4 cut(s) | 200, 544, 684, 715 |
| BfaI | CTAG | 3 cut(s) | 179, 590, 843 |
| BfmI | CTRYAG | 4 cut(s) | 74, 145, 714, 753 |
| BfuI | GTATCC | 1 cut(s) | 355 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 440 |
| BisI | GCNGC | 5 cut(s) | 120, 128, 139, 239, 432 |
| BlsI | GCNGC | 5 cut(s) | 121, 129, 140, 240, 433 |
| Bme1390I | CCNGG | 2 cut(s) | 359, 383 |
| BmgT120I | GGNCC | 1 cut(s) | 121 |
| BmiI | GGNNCC | 1 cut(s) | 905 |
| BmrFI | CCNGG | 2 cut(s) | 359, 383 |
| BmsI | GCATC | 3 cut(s) | 139, 346, 736 |
| BmtI | GCTAGC | 1 cut(s) | 182 |
| BpiI | GAAGAC | 1 cut(s) | 525 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 681, 713 |
| BpuEI | CTTGAG | 3 cut(s) | 326, 392, 393 |
| BsaI | GGTCTC | 2 cut(s) | 200, 544 |
| BsaJI | CCNNGG | 1 cut(s) | 849 |
| BsaWI | WCCGGW | 1 cut(s) | 868 |
| Bse1I | ACTGG | 1 cut(s) | 301 |
| BseAI | TCCGGA | 1 cut(s) | 868 |
| BseBI | CCWGG | 2 cut(s) | 359, 383 |
| BseDI | CCNNGG | 1 cut(s) | 849 |
| BseGI | GGATG | 4 cut(s) | 130, 462, 490, 819 |
| BseNI | ACTGG | 1 cut(s) | 301 |
| BseSI | GKGCMC | 2 cut(s) | 108, 154 |
| BseXI | GCAGC | 3 cut(s) | 139, 225, 443 |
| BseYI | CCCAGC | 1 cut(s) | 123 |
| Bsh1236I | CGCG | 2 cut(s) | 190, 222 |
| BshFI | GGCC | 1 cut(s) | 122 |
| BsiHKAI | GWGCWC | 1 cut(s) | 108 |
| BsiSI | CCGG | 1 cut(s) | 869 |
| BsmAI | GTCTC | 4 cut(s) | 200, 544, 684, 715 |
| BsmBI | CGTCTC | 1 cut(s) | 715 |
| BsnI | GGCC | 1 cut(s) | 122 |
| Bso31I | GGTCTC | 2 cut(s) | 200, 544 |
| Bsp1286I | GDGCHC | 2 cut(s) | 108, 154 |
| Bsp13I | TCCGGA | 1 cut(s) | 868 |
| Bsp143I | GATC | 5 cut(s) | 78, 90, 223, 762, 845 |
| Bsp19I | CCATGG | 1 cut(s) | 849 |
| BspACI | CCGC | 8 cut(s) | 114, 119, 136, 139, 188, 220, 331, 613 |
| BspANI | GGCC | 1 cut(s) | 122 |
| BspEI | TCCGGA | 1 cut(s) | 868 |
| BspFNI | CGCG | 2 cut(s) | 190, 222 |
| BspHI | TCATGA | 1 cut(s) | 811 |
| BspLI | GGNNCC | 1 cut(s) | 905 |
| BspMAI | CTGCAG | 4 cut(s) | 78, 149, 718, 757 |
| BspOI | GCTAGC | 1 cut(s) | 182 |
| BspPI | GGATC | 2 cut(s) | 218, 840 |
| BspTNI | GGTCTC | 2 cut(s) | 200, 544 |
| BsrBI | CCGCTC | 1 cut(s) | 119 |
| BsrI | ACTGG | 1 cut(s) | 301 |
| BssECI | CCNNGG | 1 cut(s) | 849 |
| BssMI | GATC | 5 cut(s) | 78, 90, 223, 762, 845 |
| BssT1I | CCWWGG | 1 cut(s) | 849 |
| Bst2UI | CCWGG | 2 cut(s) | 359, 383 |
| Bst4CI | ACNGT | 1 cut(s) | 397 |
| BstC8I | GCNNGC | 5 cut(s) | 168, 180, 184, 188, 335 |
| BstDEI | CTNAG | 4 cut(s) | 436, 729, 894, 926 |
| BstDSI | CCRYGG | 1 cut(s) | 849 |
| BstF5I | GGATG | 4 cut(s) | 130, 462, 490, 819 |
| BstFNI | CGCG | 2 cut(s) | 190, 222 |
| BstKTI | GATC | 5 cut(s) | 81, 93, 226, 765, 848 |
| BstMAI | GTCTC | 4 cut(s) | 200, 544, 684, 715 |
| BstMBI | GATC | 5 cut(s) | 78, 90, 223, 762, 845 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 144, 419, 428, 440, 449 |
| BstNI | CCWGG | 2 cut(s) | 359, 383 |
| BstNSI | RCATGY | 1 cut(s) | 391 |
| BstSCI | CCNGG | 2 cut(s) | 357, 381 |
| BstSFI | CTRYAG | 4 cut(s) | 74, 145, 714, 753 |
| BstSLI | GKGCMC | 2 cut(s) | 108, 154 |
| BstUI | CGCG | 2 cut(s) | 190, 222 |
| BstV1I | GCAGC | 3 cut(s) | 139, 225, 443 |
| BstV2I | GAAGAC | 1 cut(s) | 525 |
| BstX2I | RGATCY | 1 cut(s) | 845 |
| BstYI | RGATCY | 1 cut(s) | 845 |
| BsuI | GTATCC | 1 cut(s) | 355 |
| BsuRI | GGCC | 1 cut(s) | 122 |
| BtgI | CCRYGG | 1 cut(s) | 849 |
| BtsCI | GGATG | 4 cut(s) | 130, 462, 490, 819 |
| BtsI | GCAGTG | 2 cut(s) | 154, 723 |
| BtsIMutI | CAGTG | 2 cut(s) | 154, 723 |
| Cac8I | GCNNGC | 5 cut(s) | 168, 180, 184, 188, 335 |
| CciI | TCATGA | 1 cut(s) | 811 |
| Cfr13I | GGNCC | 1 cut(s) | 121 |
| CviAII | CATG | 4 cut(s) | 388, 628, 812, 850 |
| DdeI | CTNAG | 4 cut(s) | 436, 729, 894, 926 |
| DpnI | GATC | 5 cut(s) | 80, 92, 225, 764, 847 |
| DpnII | GATC | 5 cut(s) | 78, 90, 223, 762, 845 |
| EciI | GGCGGA | 1 cut(s) | 320 |
| Eco130I | CCWWGG | 1 cut(s) | 849 |
| Eco31I | GGTCTC | 2 cut(s) | 200, 544 |
| EcoRI | GAATTC | 1 cut(s) | 680 |
| EcoRII | CCWGG | 2 cut(s) | 357, 381 |
| EcoT14I | CCWWGG | 1 cut(s) | 849 |
| ErhI | CCWWGG | 1 cut(s) | 849 |
| Esp3I | CGTCTC | 1 cut(s) | 715 |
| FaeI | CATG | 4 cut(s) | 391, 631, 815, 853 |
| FatI | CATG | 4 cut(s) | 387, 627, 811, 849 |
| FauI | CCCGC | 2 cut(s) | 143, 195 |
| FauNDI | CATATG | 1 cut(s) | 480 |
| Fnu4HI | GCNGC | 5 cut(s) | 120, 128, 139, 239, 432 |
| FokI | GGATG | 4 cut(s) | 117, 449, 497, 806 |
| Fsp4HI | GCNGC | 5 cut(s) | 120, 128, 139, 239, 432 |
| FspBI | CTAG | 3 cut(s) | 179, 590, 843 |
| GluI | GCNGC | 5 cut(s) | 120, 128, 139, 239, 432 |
| GsaI | CCCAGC | 1 cut(s) | 127 |
| HaeIII | GGCC | 1 cut(s) | 122 |
| HapII | CCGG | 1 cut(s) | 869 |
| Hin1II | CATG | 4 cut(s) | 391, 631, 815, 853 |
| HindIII | AAGCTT | 2 cut(s) | 411, 779 |
| HinfI | GANTC | 8 cut(s) | 48, 216, 354, 367, 472, 572, 692, 872 |
| HpaII | CCGG | 1 cut(s) | 869 |
| Hpy166II | GTNNAC | 1 cut(s) | 106 |
| Hpy188I | TCNGA | 2 cut(s) | 59, 652 |
| Hpy188III | TCNNGA | 9 cut(s) | 213, 323, 371, 584, 638, 812, 843, 869, 939 |
| Hpy8I | GTNNAC | 1 cut(s) | 106 |
| HpyAV | CCTTC | 2 cut(s) | 522, 713 |
| HpyCH4III | ACNGT | 1 cut(s) | 397 |
| HpyCH4IV | ACGT | 2 cut(s) | 160, 564 |
| HpyCH4V | TGCA | 6 cut(s) | 76, 106, 147, 241, 716, 755 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 144, 419, 428, 440, 449 |
| HpyF3I | CTNAG | 4 cut(s) | 436, 729, 894, 926 |
| HpySE526I | ACGT | 2 cut(s) | 160, 564 |
| Hsp92II | CATG | 4 cut(s) | 391, 631, 815, 853 |
| Kpn2I | TCCGGA | 1 cut(s) | 868 |
| Kzo9I | GATC | 5 cut(s) | 78, 90, 223, 762, 845 |
| LmnI | GCTCC | 5 cut(s) | 116, 286, 498, 788, 903 |
| Lsp1109I | GCAGC | 3 cut(s) | 139, 225, 443 |
| LweI | GCATC | 3 cut(s) | 139, 346, 736 |
| MaeI | CTAG | 3 cut(s) | 179, 590, 843 |
| MaeII | ACGT | 2 cut(s) | 160, 564 |
| MaeIII | GTNAC | 2 cut(s) | 257, 569 |
| MalI | GATC | 5 cut(s) | 80, 92, 225, 764, 847 |
| MbiI | CCGCTC | 1 cut(s) | 119 |
| MboI | GATC | 5 cut(s) | 78, 90, 223, 762, 845 |
| MboII | GAAGA | 8 cut(s) | 23, 32, 35, 100, 527, 530, 560, 841 |
| MflI | RGATCY | 1 cut(s) | 845 |
| MhlI | GDGCHC | 2 cut(s) | 108, 154 |
| MluCI | AATT | 5 cut(s) | 269, 680, 741, 838, 877 |
| MlyI | GAGTC | 5 cut(s) | 57, 210, 466, 566, 686 |
| MnlI | CCTC | 7 cut(s) | 28, 55, 164, 220, 433, 620, 901 |
| MroI | TCCGGA | 1 cut(s) | 868 |
| MroXI | GAANNNNTTC | 1 cut(s) | 657 |
| MseI | TTAA | 2 cut(s) | 666, 674 |
| MslI | CAYNNNNRTG | 3 cut(s) | 467, 483, 824 |
| MspI | CCGG | 1 cut(s) | 869 |
| MspR9I | CCNGG | 2 cut(s) | 359, 383 |
| MvaI | CCWGG | 2 cut(s) | 359, 383 |
| MvnI | CGCG | 2 cut(s) | 190, 222 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 144, 419, 428, 440, 449 |
| NcoI | CCATGG | 1 cut(s) | 849 |
| NdeI | CATATG | 1 cut(s) | 480 |
| NdeII | GATC | 5 cut(s) | 78, 90, 223, 762, 845 |
| NheI | GCTAGC | 1 cut(s) | 178 |
| NlaIII | CATG | 4 cut(s) | 391, 631, 815, 853 |
| NlaIV | GGNNCC | 1 cut(s) | 905 |
| NmuCI | GTSAC | 1 cut(s) | 569 |
| NspI | RCATGY | 1 cut(s) | 391 |
| PagI | TCATGA | 1 cut(s) | 811 |
| PdmI | GAANNNNTTC | 1 cut(s) | 657 |
| PfeI | GAWTC | 3 cut(s) | 354, 367, 872 |
| PfoI | TCCNGGA | 1 cut(s) | 357 |
| PkrI | GCNGC | 5 cut(s) | 121, 129, 140, 240, 433 |
| PleI | GAGTC | 5 cut(s) | 56, 210, 466, 566, 686 |
| PpsI | GAGTC | 5 cut(s) | 56, 210, 466, 566, 686 |
| Psp1406I | AACGTT | 1 cut(s) | 160 |
| Psp6I | CCWGG | 2 cut(s) | 357, 381 |
| PspFI | CCCAGC | 1 cut(s) | 123 |
| PspGI | CCWGG | 2 cut(s) | 357, 381 |
| PspN4I | GGNNCC | 1 cut(s) | 905 |
| PspPI | GGNCC | 1 cut(s) | 121 |
| PstI | CTGCAG | 4 cut(s) | 78, 149, 718, 757 |
| PsuI | RGATCY | 1 cut(s) | 845 |
| RseI | CAYNNNNRTG | 3 cut(s) | 467, 483, 824 |
| SaqAI | TTAA | 2 cut(s) | 666, 674 |
| SatI | GCNGC | 5 cut(s) | 120, 128, 139, 239, 432 |
| Sau3AI | GATC | 5 cut(s) | 78, 90, 223, 762, 845 |
| Sau96I | GGNCC | 1 cut(s) | 121 |
| SchI | GAGTC | 5 cut(s) | 57, 210, 466, 566, 686 |
| ScrFI | CCNGG | 2 cut(s) | 359, 383 |
| SduI | GDGCHC | 2 cut(s) | 108, 154 |
| SfaNI | GCATC | 3 cut(s) | 139, 346, 736 |
| SfcI | CTRYAG | 4 cut(s) | 74, 145, 714, 753 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 467, 483, 824 |
| SmlI | CTYRAG | 3 cut(s) | 341, 371, 408 |
| SmoI | CTYRAG | 3 cut(s) | 341, 371, 408 |
| Sse9I | AATT | 5 cut(s) | 269, 680, 741, 838, 877 |
| SsiI | CCGC | 8 cut(s) | 114, 119, 136, 139, 188, 220, 331, 613 |
| SspMI | CTAG | 3 cut(s) | 179, 590, 843 |
| StyD4I | CCNGG | 2 cut(s) | 357, 381 |
| StyI | CCWWGG | 1 cut(s) | 849 |
| TaaI | ACNGT | 1 cut(s) | 397 |
| TaiI | ACGT | 2 cut(s) | 163, 567 |
| TaqI | TCGA | 4 cut(s) | 81, 156, 214, 739 |
| TasI | AATT | 5 cut(s) | 269, 680, 741, 838, 877 |
| TauI | GCSGC | 2 cut(s) | 122, 141 |
| TfiI | GAWTC | 3 cut(s) | 354, 367, 872 |
| Tru1I | TTAA | 2 cut(s) | 666, 674 |
| Tru9I | TTAA | 2 cut(s) | 666, 674 |
| TscAI | CASTG | 2 cut(s) | 154, 723 |
| TseFI | GTSAC | 1 cut(s) | 569 |
| TseI | GCWGC | 3 cut(s) | 127, 238, 431 |
| Tsp45I | GTSAC | 1 cut(s) | 569 |
| TspDTI | ATGAA | 5 cut(s) | 17, 524, 528, 616, 764 |
| TspGWI | ACGGA | 1 cut(s) | 557 |
| TspRI | CASTG | 2 cut(s) | 154, 723 |
| VneI | GTGCAC | 1 cut(s) | 104 |
| XapI | RAATTY | 1 cut(s) | 680 |
| XbaI | TCTAGA | 1 cut(s) | 842 |
| XceI | RCATGY | 1 cut(s) | 391 |
| XmnI | GAANNNNTTC | 1 cut(s) | 657 |
| XspI | CTAG | 3 cut(s) | 179, 590, 843 |