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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 159 |
| AciI | CCGC | 1 cut(s) | 226 |
| AclWI | GGATC | 3 cut(s) | 311, 324, 416 |
| AcsI | RAATTY | 1 cut(s) | 293 |
| AgsI | TTSAA | 2 cut(s) | 241, 254 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 153, 185 |
| AluBI | AGCT | 3 cut(s) | 20, 427, 437 |
| AluI | AGCT | 3 cut(s) | 20, 427, 437 |
| Alw21I | GWGCWC | 1 cut(s) | 429 |
| Alw26I | GTCTC | 2 cut(s) | 157, 361 |
| AlwI | GGATC | 3 cut(s) | 311, 324, 416 |
| ApeKI | GCWGC | 1 cut(s) | 44 |
| ApoI | RAATTY | 1 cut(s) | 293 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 270 |
| AsuHPI | GGTGA | 1 cut(s) | 76 |
| BamHI | GGATCC | 1 cut(s) | 316 |
| BanII | GRGCYC | 1 cut(s) | 429 |
| BbsI | GAAGAC | 1 cut(s) | 341 |
| Bbv12I | GWGCWC | 1 cut(s) | 429 |
| BbvI | GCAGC | 1 cut(s) | 56 |
| BccI | CCATC | 2 cut(s) | 207, 361 |
| BcoDI | GTCTC | 2 cut(s) | 157, 361 |
| BfaI | CTAG | 1 cut(s) | 203 |
| BfmI | CTRYAG | 2 cut(s) | 382, 399 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 53 |
| BisI | GCNGC | 1 cut(s) | 45 |
| BlsI | GCNGC | 1 cut(s) | 46 |
| BmiI | GGNNCC | 1 cut(s) | 318 |
| BpiI | GAAGAC | 1 cut(s) | 341 |
| Bsa29I | ATCGAT | 1 cut(s) | 390 |
| BsaI | GGTCTC | 1 cut(s) | 157 |
| BseCI | ATCGAT | 1 cut(s) | 390 |
| BseGI | GGATG | 2 cut(s) | 75, 465 |
| BseMII | CTCAG | 1 cut(s) | 276 |
| BseXI | GCAGC | 1 cut(s) | 56 |
| Bsh1236I | CGCG | 1 cut(s) | 159 |
| BshVI | ATCGAT | 1 cut(s) | 390 |
| BsiHKAI | GWGCWC | 1 cut(s) | 429 |
| BsmAI | GTCTC | 2 cut(s) | 157, 361 |
| BsmBI | CGTCTC | 1 cut(s) | 361 |
| Bso31I | GGTCTC | 1 cut(s) | 157 |
| Bsp1286I | GDGCHC | 1 cut(s) | 429 |
| Bsp143I | GATC | 4 cut(s) | 199, 309, 316, 408 |
| BspACI | CCGC | 1 cut(s) | 226 |
| BspCNI | CTCAG | 1 cut(s) | 275 |
| BspDI | ATCGAT | 1 cut(s) | 390 |
| BspFNI | CGCG | 1 cut(s) | 159 |
| BspHI | TCATGA | 1 cut(s) | 421 |
| BspLI | GGNNCC | 1 cut(s) | 318 |
| BspPI | GGATC | 3 cut(s) | 311, 324, 416 |
| BspTNI | GGTCTC | 1 cut(s) | 157 |
| BssMI | GATC | 4 cut(s) | 199, 309, 316, 408 |
| Bst4CI | ACNGT | 2 cut(s) | 10, 147 |
| BstC8I | GCNNGC | 1 cut(s) | 18 |
| BstDEI | CTNAG | 3 cut(s) | 49, 262, 375 |
| BstF5I | GGATG | 2 cut(s) | 75, 465 |
| BstFNI | CGCG | 1 cut(s) | 159 |
| BstKTI | GATC | 4 cut(s) | 202, 312, 319, 411 |
| BstMAI | GTCTC | 2 cut(s) | 157, 361 |
| BstMBI | GATC | 4 cut(s) | 199, 309, 316, 408 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 32, 41, 53 |
| BstSFI | CTRYAG | 2 cut(s) | 382, 399 |
| BstUI | CGCG | 1 cut(s) | 159 |
| BstV1I | GCAGC | 1 cut(s) | 56 |
| BstV2I | GAAGAC | 1 cut(s) | 341 |
| BstX2I | RGATCY | 1 cut(s) | 316 |
| BstYI | RGATCY | 1 cut(s) | 316 |
| Bsu15I | ATCGAT | 1 cut(s) | 390 |
| BsuTUI | ATCGAT | 1 cut(s) | 390 |
| BtsCI | GGATG | 2 cut(s) | 75, 465 |
| BtsIMutI | CAGTG | 1 cut(s) | 447 |
| Cac8I | GCNNGC | 1 cut(s) | 18 |
| CciI | TCATGA | 1 cut(s) | 421 |
| ClaI | ATCGAT | 1 cut(s) | 390 |
| CviAII | CATG | 2 cut(s) | 23, 422 |
| CviJI | RGCY | 5 cut(s) | 20, 47, 222, 427, 437 |
| CviKI_1 | RGCY | 5 cut(s) | 20, 47, 222, 427, 437 |
| DdeI | CTNAG | 3 cut(s) | 49, 262, 375 |
| DpnI | GATC | 4 cut(s) | 201, 311, 318, 410 |
| DpnII | GATC | 4 cut(s) | 199, 309, 316, 408 |
| Ecl136II | GAGCTC | 1 cut(s) | 427 |
| Eco24I | GRGCYC | 1 cut(s) | 429 |
| Eco31I | GGTCTC | 1 cut(s) | 157 |
| Eco53kI | GAGCTC | 1 cut(s) | 427 |
| EcoICRI | GAGCTC | 1 cut(s) | 427 |
| EcoRI | GAATTC | 1 cut(s) | 293 |
| EcoT38I | GRGCYC | 1 cut(s) | 429 |
| Esp3I | CGTCTC | 1 cut(s) | 361 |
| FaeI | CATG | 2 cut(s) | 26, 425 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 326, 358 |
| FatI | CATG | 2 cut(s) | 22, 421 |
| FauNDI | CATATG | 1 cut(s) | 93 |
| Fnu4HI | GCNGC | 1 cut(s) | 45 |
| FokI | GGATG | 2 cut(s) | 62, 452 |
| FriOI | GRGCYC | 1 cut(s) | 429 |
| Fsp4HI | GCNGC | 1 cut(s) | 45 |
| FspBI | CTAG | 1 cut(s) | 203 |
| GluI | GCNGC | 1 cut(s) | 45 |
| Hin1II | CATG | 2 cut(s) | 26, 425 |
| HinfI | GANTC | 4 cut(s) | 85, 185, 337, 387 |
| HphI | GGTGA | 1 cut(s) | 76 |
| Hpy188I | TCNGA | 1 cut(s) | 265 |
| Hpy188III | TCNNGA | 4 cut(s) | 197, 203, 251, 422 |
| HpyCH4III | ACNGT | 2 cut(s) | 10, 147 |
| HpyCH4IV | ACGT | 1 cut(s) | 177 |
| HpyCH4V | TGCA | 1 cut(s) | 362 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 32, 41, 53 |
| HpyF3I | CTNAG | 3 cut(s) | 49, 262, 375 |
| HpySE526I | ACGT | 1 cut(s) | 177 |
| Hsp92II | CATG | 2 cut(s) | 26, 425 |
| Kzo9I | GATC | 4 cut(s) | 199, 309, 316, 408 |
| LpnPI | CCDG | 3 cut(s) | 151, 203, 387 |
| Lsp1109I | GCAGC | 1 cut(s) | 56 |
| MaeI | CTAG | 1 cut(s) | 203 |
| MaeII | ACGT | 1 cut(s) | 177 |
| MaeIII | GTNAC | 3 cut(s) | 173, 394, 445 |
| MalI | GATC | 4 cut(s) | 201, 311, 318, 410 |
| MboI | GATC | 4 cut(s) | 199, 309, 316, 408 |
| MboII | GAAGA | 2 cut(s) | 173, 346 |
| MflI | RGATCY | 1 cut(s) | 316 |
| MhlI | GDGCHC | 1 cut(s) | 429 |
| MluCI | AATT | 4 cut(s) | 100, 246, 293, 484 |
| MlyI | GAGTC | 2 cut(s) | 79, 331 |
| MnlI | CCTC | 2 cut(s) | 46, 233 |
| MroXI | GAANNNNTTC | 1 cut(s) | 270 |
| MseI | TTAA | 2 cut(s) | 279, 287 |
| MslI | CAYNNNNRTG | 1 cut(s) | 80 |
| MvnI | CGCG | 1 cut(s) | 159 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 32, 41, 53 |
| NdeI | CATATG | 1 cut(s) | 93 |
| NdeII | GATC | 4 cut(s) | 199, 309, 316, 408 |
| NlaIII | CATG | 2 cut(s) | 26, 425 |
| NlaIV | GGNNCC | 1 cut(s) | 318 |
| NmuCI | GTSAC | 1 cut(s) | 445 |
| PagI | TCATGA | 1 cut(s) | 421 |
| PdmI | GAANNNNTTC | 1 cut(s) | 270 |
| PfeI | GAWTC | 2 cut(s) | 185, 387 |
| PkrI | GCNGC | 1 cut(s) | 46 |
| PleI | GAGTC | 2 cut(s) | 79, 331 |
| PpsI | GAGTC | 2 cut(s) | 79, 331 |
| Psp124BI | GAGCTC | 1 cut(s) | 429 |
| PspN4I | GGNNCC | 1 cut(s) | 318 |
| PsuI | RGATCY | 1 cut(s) | 316 |
| RseI | CAYNNNNRTG | 1 cut(s) | 80 |
| SacI | GAGCTC | 1 cut(s) | 429 |
| SaqAI | TTAA | 2 cut(s) | 279, 287 |
| SatI | GCNGC | 1 cut(s) | 45 |
| Sau3AI | GATC | 4 cut(s) | 199, 309, 316, 408 |
| SchI | GAGTC | 2 cut(s) | 79, 331 |
| SduI | GDGCHC | 1 cut(s) | 429 |
| SetI | ASST | 6 cut(s) | 22, 66, 180, 419, 429, 439 |
| SfcI | CTRYAG | 2 cut(s) | 382, 399 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 80 |
| Sse9I | AATT | 4 cut(s) | 100, 246, 293, 484 |
| SsiI | CCGC | 1 cut(s) | 226 |
| SspMI | CTAG | 1 cut(s) | 203 |
| SstI | GAGCTC | 1 cut(s) | 429 |
| TaaI | ACNGT | 2 cut(s) | 10, 147 |
| TaiI | ACGT | 1 cut(s) | 180 |
| TaqI | TCGA | 1 cut(s) | 390 |
| TasI | AATT | 4 cut(s) | 100, 246, 293, 484 |
| TfiI | GAWTC | 2 cut(s) | 185, 387 |
| Tru1I | TTAA | 2 cut(s) | 279, 287 |
| Tru9I | TTAA | 2 cut(s) | 279, 287 |
| TscAI | CASTG | 1 cut(s) | 454 |
| TseFI | GTSAC | 1 cut(s) | 445 |
| TseI | GCWGC | 1 cut(s) | 44 |
| Tsp45I | GTSAC | 1 cut(s) | 445 |
| TspDTI | ATGAA | 4 cut(s) | 137, 141, 410, 455 |
| TspGWI | ACGGA | 2 cut(s) | 329, 421 |
| TspRI | CASTG | 1 cut(s) | 454 |
| XapI | RAATTY | 1 cut(s) | 293 |
| XbaI | TCTAGA | 1 cut(s) | 202 |
| XmnI | GAANNNNTTC | 1 cut(s) | 270 |
| XspI | CTAG | 1 cut(s) | 203 |