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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 79, 361 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 1 cut(s) | 376 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 2 cut(s) | 155, 161 |
| AluI | AGCT | 2 cut(s) | 155, 161 |
| Alw26I | GTCTC | 2 cut(s) | 292, 495 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| AspS9I | GGNCC | 1 cut(s) | 313 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 313 |
| BbsI | GAAGAC | 1 cut(s) | 476 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 3 cut(s) | 92, 215, 342 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BcoDI | GTCTC | 2 cut(s) | 292, 495 |
| BfaI | CTAG | 1 cut(s) | 126 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme18I | GGWCC | 1 cut(s) | 313 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgT120I | GGNCC | 1 cut(s) | 313 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 1 cut(s) | 476 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 1 cut(s) | 141 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| Bse1I | ACTGG | 3 cut(s) | 49, 244, 250 |
| BseGI | GGATG | 2 cut(s) | 210, 238 |
| BseNI | ACTGG | 3 cut(s) | 49, 244, 250 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsmAI | GTCTC | 2 cut(s) | 292, 495 |
| BsmBI | CGTCTC | 1 cut(s) | 495 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| BspACI | CCGC | 2 cut(s) | 79, 361 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 3 cut(s) | 49, 244, 250 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 2 cut(s) | 184, 337 |
| BstF5I | GGATG | 2 cut(s) | 210, 238 |
| BstMAI | GTCTC | 2 cut(s) | 292, 495 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| BstNSI | RCATGY | 1 cut(s) | 139 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 1 cut(s) | 476 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtsCI | GGATG | 2 cut(s) | 210, 238 |
| BtsIMutI | CAGTG | 1 cut(s) | 257 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| Cfr13I | GGNCC | 1 cut(s) | 313 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 2 cut(s) | 131, 136 |
| CviJI | RGCY | 9 cut(s) | 48, 124, 129, 155, 161, 182, 206, 280, 357 |
| CviKI_1 | RGCY | 9 cut(s) | 48, 124, 129, 155, 161, 182, 206, 280, 357 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 2 cut(s) | 184, 337 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 313 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| Esp3I | CGTCTC | 1 cut(s) | 495 |
| FaeI | CATG | 2 cut(s) | 134, 139 |
| FaiI | YATR | 7 cut(s) | 132, 137, 228, 230, 257, 354, 435 |
| FatI | CATG | 2 cut(s) | 130, 135 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 2 cut(s) | 197, 245 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 1 cut(s) | 126 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| Hin1II | CATG | 2 cut(s) | 134, 139 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 6 cut(s) | 102, 115, 220, 236, 320, 472 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 400 |
| Hpy188III | TCNNGA | 4 cut(s) | 71, 119, 332, 386 |
| HpyAV | CCTTC | 1 cut(s) | 270 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4V | TGCA | 1 cut(s) | 496 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 337 |
| Hsp92II | CATG | 2 cut(s) | 134, 139 |
| LmnI | GCTCC | 2 cut(s) | 34, 246 |
| LpnPI | CCDG | 9 cut(s) | 23, 30, 46, 95, 182, 257, 263, 286, 338 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 1 cut(s) | 126 |
| MaeIII | GTNAC | 1 cut(s) | 317 |
| MboII | GAAGA | 3 cut(s) | 275, 308, 481 |
| MluCI | AATT | 2 cut(s) | 17, 428 |
| MlyI | GAGTC | 3 cut(s) | 214, 314, 466 |
| MnlI | CCTC | 3 cut(s) | 181, 368, 417 |
| MseI | TTAA | 3 cut(s) | 90, 414, 422 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NlaIII | CATG | 2 cut(s) | 134, 139 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| NspI | RCATGY | 1 cut(s) | 139 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PfeI | GAWTC | 3 cut(s) | 102, 115, 236 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 3 cut(s) | 214, 314, 466 |
| PpsI | GAGTC | 3 cut(s) | 214, 314, 466 |
| PspPI | GGNCC | 1 cut(s) | 313 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SaqAI | TTAA | 3 cut(s) | 90, 414, 422 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau96I | GGNCC | 1 cut(s) | 313 |
| SchI | GAGTC | 3 cut(s) | 214, 314, 466 |
| SetI | ASST | 7 cut(s) | 12, 65, 96, 157, 163, 315, 409 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 313 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 2 cut(s) | 17, 428 |
| SsiI | CCGC | 2 cut(s) | 79, 361 |
| SspMI | CTAG | 1 cut(s) | 126 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaqI | TCGA | 3 cut(s) | 96, 120, 294 |
| TasI | AATT | 2 cut(s) | 17, 428 |
| TfiI | GAWTC | 3 cut(s) | 102, 115, 236 |
| Tru1I | TTAA | 3 cut(s) | 90, 414, 422 |
| Tru9I | TTAA | 3 cut(s) | 90, 414, 422 |
| TscAI | CASTG | 1 cut(s) | 257 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 2 cut(s) | 272, 276 |
| TspGWI | ACGGA | 1 cut(s) | 305 |
| TspRI | CASTG | 1 cut(s) | 257 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 1 cut(s) | 313 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XceI | RCATGY | 1 cut(s) | 139 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XspI | CTAG | 1 cut(s) | 126 |