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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 621 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 687 |
| AccB1I | GGYRCC | 1 cut(s) | 180 |
| AccBSI | CCGCTC | 1 cut(s) | 652 |
| AccII | CGCG | 1 cut(s) | 248 |
| AciI | CCGC | 2 cut(s) | 162, 652 |
| AclWI | GGATC | 3 cut(s) | 88, 101, 509 |
| AcsI | RAATTY | 2 cut(s) | 485, 509 |
| AcyI | GRCGYC | 1 cut(s) | 181 |
| AfaI | GTAC | 2 cut(s) | 142, 212 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 55, 638, 639, 709 |
| AgsI | TTSAA | 6 cut(s) | 110, 298, 305, 334, 582, 608 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 334, 401 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 246, 278 |
| AluBI | AGCT | 4 cut(s) | 113, 344, 520, 542 |
| AluI | AGCT | 4 cut(s) | 113, 344, 520, 542 |
| Alw21I | GWGCWC | 1 cut(s) | 75 |
| Alw26I | GTCTC | 1 cut(s) | 454 |
| AlwI | GGATC | 3 cut(s) | 88, 101, 509 |
| AoxI | GGCC | 2 cut(s) | 57, 584 |
| ApoI | RAATTY | 2 cut(s) | 485, 509 |
| AspLEI | GCGC | 2 cut(s) | 183, 250 |
| AspS9I | GGNCC | 2 cut(s) | 57, 689 |
| AvaII | GGWCC | 1 cut(s) | 689 |
| BamHI | GGATCC | 1 cut(s) | 93 |
| BanI | GGYRCC | 1 cut(s) | 180 |
| BauI | CACGAG | 1 cut(s) | 563 |
| Bbv12I | GWGCWC | 1 cut(s) | 75 |
| BccI | CCATC | 2 cut(s) | 84, 522 |
| BceAI | ACGGC | 1 cut(s) | 159 |
| BciVI | GTATCC | 1 cut(s) | 271 |
| BcoDI | GTCTC | 1 cut(s) | 454 |
| BfaI | CTAG | 3 cut(s) | 231, 251, 495 |
| BfmI | CTRYAG | 1 cut(s) | 537 |
| BfoI | RGCGCY | 1 cut(s) | 184 |
| BfuI | GTATCC | 1 cut(s) | 271 |
| Bme18I | GGWCC | 1 cut(s) | 689 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 334, 401 |
| BmgT120I | GGNCC | 2 cut(s) | 57, 689 |
| BmiI | GGNNCC | 3 cut(s) | 95, 182, 656 |
| BmsI | GCATC | 1 cut(s) | 217 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BsaHI | GRCGYC | 1 cut(s) | 181 |
| BsaJI | CCNNGG | 1 cut(s) | 60 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 55, 638, 639, 709 |
| Bse1I | ACTGG | 2 cut(s) | 40, 210 |
| BseDI | CCNNGG | 1 cut(s) | 60 |
| BseGI | GGATG | 2 cut(s) | 70, 232 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 55, 638, 639, 709 |
| BseMII | CTCAG | 1 cut(s) | 465 |
| BseNI | ACTGG | 2 cut(s) | 40, 210 |
| BseRI | GAGGAG | 1 cut(s) | 275 |
| BsgI | GTGCAG | 1 cut(s) | 6 |
| Bsh1236I | CGCG | 1 cut(s) | 248 |
| BshFI | GGCC | 2 cut(s) | 59, 586 |
| BshNI | GGYRCC | 1 cut(s) | 180 |
| BsiHKAI | GWGCWC | 1 cut(s) | 75 |
| BsiWI | CGTACG | 1 cut(s) | 140 |
| BslFI | GGGAC | 1 cut(s) | 684 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 55, 638, 639, 709 |
| BsmAI | GTCTC | 1 cut(s) | 454 |
| BsmBI | CGTCTC | 1 cut(s) | 454 |
| BsmFI | GGGAC | 1 cut(s) | 684 |
| BsnI | GGCC | 2 cut(s) | 59, 586 |
| Bsp1286I | GDGCHC | 1 cut(s) | 75 |
| Bsp143I | GATC | 2 cut(s) | 93, 501 |
| BspACI | CCGC | 2 cut(s) | 162, 652 |
| BspANI | GGCC | 2 cut(s) | 59, 586 |
| BspCNI | CTCAG | 1 cut(s) | 464 |
| BspFNI | CGCG | 1 cut(s) | 248 |
| BspLI | GGNNCC | 3 cut(s) | 95, 182, 656 |
| BspPI | GGATC | 3 cut(s) | 88, 101, 509 |
| BspQI | GCTCTTC | 1 cut(s) | 249 |
| BspT107I | GGYRCC | 1 cut(s) | 180 |
| BsrBI | CCGCTC | 1 cut(s) | 652 |
| BsrI | ACTGG | 2 cut(s) | 40, 210 |
| BssECI | CCNNGG | 1 cut(s) | 60 |
| BssMI | GATC | 2 cut(s) | 93, 501 |
| BssNI | GRCGYC | 1 cut(s) | 181 |
| BssSI | CACGAG | 1 cut(s) | 563 |
| Bst2BI | CACGAG | 1 cut(s) | 563 |
| Bst6I | CTCTTC | 1 cut(s) | 249 |
| BstACI | GRCGYC | 1 cut(s) | 181 |
| BstDEI | CTNAG | 3 cut(s) | 451, 597, 660 |
| BstDSI | CCRYGG | 1 cut(s) | 60 |
| BstF5I | GGATG | 2 cut(s) | 70, 232 |
| BstFNI | CGCG | 1 cut(s) | 248 |
| BstH2I | RGCGCY | 1 cut(s) | 184 |
| BstHHI | GCGC | 2 cut(s) | 183, 250 |
| BstKTI | GATC | 2 cut(s) | 96, 504 |
| BstMAI | GTCTC | 1 cut(s) | 454 |
| BstMBI | GATC | 2 cut(s) | 93, 501 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 256, 469 |
| BstSFI | CTRYAG | 1 cut(s) | 537 |
| BstUI | CGCG | 1 cut(s) | 248 |
| BstX2I | RGATCY | 1 cut(s) | 93 |
| BstYI | RGATCY | 1 cut(s) | 93 |
| BsuI | GTATCC | 1 cut(s) | 271 |
| BsuRI | GGCC | 2 cut(s) | 59, 586 |
| BtgI | CCRYGG | 1 cut(s) | 60 |
| BtsCI | GGATG | 2 cut(s) | 70, 232 |
| CfoI | GCGC | 2 cut(s) | 183, 250 |
| Cfr13I | GGNCC | 2 cut(s) | 57, 689 |
| Csp6I | GTAC | 2 cut(s) | 141, 211 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 49, 84 |
| CviAII | CATG | 3 cut(s) | 187, 214, 551 |
| CviJI | RGCY | 8 cut(s) | 39, 59, 113, 146, 344, 520, 542, 586 |
| CviKI_1 | RGCY | 8 cut(s) | 39, 59, 113, 146, 344, 520, 542, 586 |
| CviQI | GTAC | 2 cut(s) | 141, 211 |
| DdeI | CTNAG | 3 cut(s) | 451, 597, 660 |
| DinI | GGCGCC | 1 cut(s) | 182 |
| DpnI | GATC | 2 cut(s) | 95, 503 |
| DpnII | GATC | 2 cut(s) | 93, 501 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 687 |
| DriI | GACNNNNNGTC | 2 cut(s) | 334, 401 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 687 |
| Eam1104I | CTCTTC | 1 cut(s) | 249 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 334, 401 |
| EarI | CTCTTC | 1 cut(s) | 249 |
| Eco147I | AGGCCT | 1 cut(s) | 586 |
| Eco47I | GGWCC | 1 cut(s) | 689 |
| EcoRI | GAATTC | 1 cut(s) | 485 |
| EgeI | GGCGCC | 1 cut(s) | 182 |
| EheI | GGCGCC | 1 cut(s) | 182 |
| Esp3I | CGTCTC | 1 cut(s) | 454 |
| FaeI | CATG | 3 cut(s) | 190, 217, 554 |
| FaqI | GGGAC | 1 cut(s) | 684 |
| FatI | CATG | 3 cut(s) | 186, 213, 550 |
| FokI | GGATG | 2 cut(s) | 77, 239 |
| FspBI | CTAG | 3 cut(s) | 231, 251, 495 |
| GlaI | GCGC | 2 cut(s) | 182, 249 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 1 cut(s) | 184 |
| HaeIII | GGCC | 2 cut(s) | 59, 586 |
| HhaI | GCGC | 2 cut(s) | 183, 250 |
| Hin1I | GRCGYC | 1 cut(s) | 181 |
| Hin1II | CATG | 3 cut(s) | 190, 217, 554 |
| Hin6I | GCGC | 2 cut(s) | 181, 248 |
| HinP1I | GCGC | 2 cut(s) | 181, 248 |
| HinfI | GANTC | 1 cut(s) | 321 |
| Hpy166II | GTNNAC | 1 cut(s) | 395 |
| Hpy188I | TCNGA | 4 cut(s) | 43, 203, 358, 593 |
| Hpy188III | TCNNGA | 3 cut(s) | 505, 565, 608 |
| Hpy8I | GTNNAC | 1 cut(s) | 395 |
| HpyCH4IV | ACGT | 1 cut(s) | 682 |
| HpyCH4V | TGCA | 2 cut(s) | 23, 629 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 256, 469 |
| HpyF3I | CTNAG | 3 cut(s) | 451, 597, 660 |
| HpySE526I | ACGT | 1 cut(s) | 682 |
| Hsp92I | GRCGYC | 1 cut(s) | 181 |
| Hsp92II | CATG | 3 cut(s) | 190, 217, 554 |
| HspAI | GCGC | 2 cut(s) | 181, 248 |
| KasI | GGCGCC | 1 cut(s) | 180 |
| Kzo9I | GATC | 2 cut(s) | 93, 501 |
| LguI | GCTCTTC | 1 cut(s) | 249 |
| LmnI | GCTCC | 3 cut(s) | 118, 642, 649 |
| LpnPI | CCDG | 5 cut(s) | 21, 33, 191, 303, 672 |
| LweI | GCATC | 1 cut(s) | 217 |
| MaeI | CTAG | 3 cut(s) | 231, 251, 495 |
| MaeII | ACGT | 1 cut(s) | 682 |
| MaeIII | GTNAC | 1 cut(s) | 403 |
| MalI | GATC | 2 cut(s) | 95, 503 |
| MbiI | CCGCTC | 1 cut(s) | 652 |
| MboI | GATC | 2 cut(s) | 93, 501 |
| MboII | GAAGA | 2 cut(s) | 266, 580 |
| MflI | RGATCY | 1 cut(s) | 93 |
| MhlI | GDGCHC | 1 cut(s) | 75 |
| Mly113I | GGCGCC | 1 cut(s) | 181 |
| MmeI | TCCRAC | 1 cut(s) | 226 |
| MnlI | CCTC | 9 cut(s) | 40, 171, 176, 293, 296, 451, 572, 604, 632 |
| MseI | TTAA | 2 cut(s) | 104, 173 |
| MslI | CAYNNNNRTG | 1 cut(s) | 173 |
| MvnI | CGCG | 1 cut(s) | 248 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 256, 469 |
| NarI | GGCGCC | 1 cut(s) | 181 |
| NdeII | GATC | 2 cut(s) | 93, 501 |
| NlaIII | CATG | 3 cut(s) | 190, 217, 554 |
| NlaIV | GGNNCC | 3 cut(s) | 95, 182, 656 |
| NmuCI | GTSAC | 1 cut(s) | 403 |
| PceI | AGGCCT | 1 cut(s) | 586 |
| PciSI | GCTCTTC | 1 cut(s) | 249 |
| PfeI | GAWTC | 1 cut(s) | 321 |
| Pfl23II | CGTACG | 1 cut(s) | 140 |
| PluTI | GGCGCC | 1 cut(s) | 184 |
| PsiI | TTATAA | 1 cut(s) | 621 |
| PspLI | CGTACG | 1 cut(s) | 140 |
| PspN4I | GGNNCC | 3 cut(s) | 95, 182, 656 |
| PspPI | GGNCC | 2 cut(s) | 57, 689 |
| PsuI | RGATCY | 1 cut(s) | 93 |
| RsaI | GTAC | 2 cut(s) | 142, 212 |
| RsaNI | GTAC | 2 cut(s) | 141, 211 |
| RseI | CAYNNNNRTG | 1 cut(s) | 173 |
| SapI | GCTCTTC | 1 cut(s) | 249 |
| SaqAI | TTAA | 2 cut(s) | 104, 173 |
| Sau3AI | GATC | 2 cut(s) | 93, 501 |
| Sau96I | GGNCC | 2 cut(s) | 57, 689 |
| SduI | GDGCHC | 1 cut(s) | 75 |
| SetI | ASST | 7 cut(s) | 32, 115, 346, 443, 522, 544, 685 |
| SfaNI | GCATC | 1 cut(s) | 217 |
| SfcI | CTRYAG | 1 cut(s) | 537 |
| SfoI | GGCGCC | 1 cut(s) | 182 |
| SinI | GGWCC | 1 cut(s) | 689 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 173 |
| SseBI | AGGCCT | 1 cut(s) | 586 |
| SsiI | CCGC | 2 cut(s) | 162, 652 |
| SspDI | GGCGCC | 1 cut(s) | 180 |
| SspMI | CTAG | 3 cut(s) | 231, 251, 495 |
| StuI | AGGCCT | 1 cut(s) | 586 |
| TaiI | ACGT | 1 cut(s) | 685 |
| TaqI | TCGA | 3 cut(s) | 5, 478, 489 |
| TatI | WGTACW | 1 cut(s) | 210 |
| TfiI | GAWTC | 1 cut(s) | 321 |
| Tru1I | TTAA | 2 cut(s) | 104, 173 |
| Tru9I | TTAA | 2 cut(s) | 104, 173 |
| TseFI | GTSAC | 1 cut(s) | 403 |
| Tsp45I | GTSAC | 1 cut(s) | 403 |
| TspGWI | ACGGA | 5 cut(s) | 77, 328, 497, 514, 693 |
| VpaK11BI | GGWCC | 1 cut(s) | 689 |
| XapI | RAATTY | 2 cut(s) | 485, 509 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 379 |
| XspI | CTAG | 3 cut(s) | 231, 251, 495 |