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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 894 |
| AccB1I | GGYRCC | 1 cut(s) | 849 |
| AccII | CGCG | 1 cut(s) | 834 |
| AciI | CCGC | 1 cut(s) | 928 |
| AcsI | RAATTY | 2 cut(s) | 593, 879 |
| AcuI | CTGAAG | 1 cut(s) | 45 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 284, 845 |
| AgsI | TTSAA | 4 cut(s) | 85, 113, 541, 789 |
| AjnI | CCWGG | 1 cut(s) | 393 |
| AleI | CACNNNNGTG | 1 cut(s) | 531 |
| AluBI | AGCT | 9 cut(s) | 73, 137, 182, 226, 257, 264, 431, 437, 737 |
| AluI | AGCT | 9 cut(s) | 73, 137, 182, 226, 257, 264, 431, 437, 737 |
| Alw21I | GWGCWC | 1 cut(s) | 433 |
| Alw26I | GTCTC | 3 cut(s) | 13, 104, 211 |
| Ama87I | CYCGRG | 2 cut(s) | 167, 407 |
| AoxI | GGCC | 1 cut(s) | 381 |
| ApeKI | GCWGC | 3 cut(s) | 70, 73, 455 |
| ApoI | RAATTY | 2 cut(s) | 593, 879 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 570 |
| AspLEI | GCGC | 1 cut(s) | 836 |
| AspS9I | GGNCC | 1 cut(s) | 896 |
| AvaI | CYCGRG | 2 cut(s) | 167, 407 |
| AvaII | GGWCC | 1 cut(s) | 896 |
| AxyI | CCTNAGG | 1 cut(s) | 840 |
| BanI | GGYRCC | 1 cut(s) | 849 |
| BanII | GRGCYC | 1 cut(s) | 433 |
| Bbv12I | GWGCWC | 1 cut(s) | 433 |
| BbvI | GCAGC | 3 cut(s) | 60, 82, 467 |
| BccI | CCATC | 1 cut(s) | 491 |
| BciT130I | CCWGG | 1 cut(s) | 395 |
| BciVI | GTATCC | 1 cut(s) | 391 |
| BcoDI | GTCTC | 3 cut(s) | 13, 104, 211 |
| BfaI | CTAG | 2 cut(s) | 414, 873 |
| BfmI | CTRYAG | 1 cut(s) | 232 |
| BfuI | GTATCC | 1 cut(s) | 391 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 464 |
| BglII | AGATCT | 1 cut(s) | 272 |
| BisI | GCNGC | 3 cut(s) | 71, 74, 456 |
| BlsI | GCNGC | 3 cut(s) | 72, 75, 457 |
| Bme1390I | CCNGG | 1 cut(s) | 395 |
| Bme18I | GGWCC | 1 cut(s) | 896 |
| BmeT110I | CYCGRG | 2 cut(s) | 167, 407 |
| BmgT120I | GGNCC | 1 cut(s) | 896 |
| BmiI | GGNNCC | 1 cut(s) | 851 |
| BmrFI | CCNGG | 1 cut(s) | 395 |
| BmsI | GCATC | 2 cut(s) | 382, 607 |
| BpmI | CTGGAG | 1 cut(s) | 58 |
| Bpu10I | CCTNAGC | 1 cut(s) | 222 |
| BpuEI | CTTGAG | 2 cut(s) | 362, 417 |
| BsaI | GGTCTC | 2 cut(s) | 13, 211 |
| BsaJI | CCNNGG | 1 cut(s) | 459 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 284, 845 |
| Bse1I | ACTGG | 2 cut(s) | 312, 337 |
| Bse21I | CCTNAGG | 1 cut(s) | 840 |
| Bse3DI | GCAATG | 1 cut(s) | 627 |
| BseBI | CCWGG | 1 cut(s) | 395 |
| BseDI | CCNNGG | 1 cut(s) | 459 |
| BseGI | GGATG | 4 cut(s) | 294, 486, 514, 765 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 284, 845 |
| BseMI | GCAATG | 1 cut(s) | 627 |
| BseMII | CTCAG | 2 cut(s) | 86, 831 |
| BseNI | ACTGG | 2 cut(s) | 312, 337 |
| BseXI | GCAGC | 3 cut(s) | 60, 82, 467 |
| BseYI | CCCAGC | 1 cut(s) | 46 |
| Bsh1236I | CGCG | 1 cut(s) | 834 |
| BshFI | GGCC | 1 cut(s) | 383 |
| BshNI | GGYRCC | 1 cut(s) | 849 |
| BsiHKAI | GWGCWC | 1 cut(s) | 433 |
| BsiHKCI | CYCGRG | 2 cut(s) | 167, 407 |
| BslFI | GGGAC | 1 cut(s) | 185 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 284, 845 |
| BsmAI | GTCTC | 3 cut(s) | 13, 104, 211 |
| BsmFI | GGGAC | 1 cut(s) | 185 |
| BsnI | GGCC | 1 cut(s) | 383 |
| Bso31I | GGTCTC | 2 cut(s) | 13, 211 |
| BsoBI | CYCGRG | 2 cut(s) | 167, 407 |
| Bsp1286I | GDGCHC | 1 cut(s) | 433 |
| Bsp143I | GATC | 3 cut(s) | 41, 130, 272 |
| BspACI | CCGC | 1 cut(s) | 928 |
| BspANI | GGCC | 1 cut(s) | 383 |
| BspCNI | CTCAG | 2 cut(s) | 87, 832 |
| BspFNI | CGCG | 1 cut(s) | 834 |
| BspHI | TCATGA | 1 cut(s) | 721 |
| BspLI | GGNNCC | 1 cut(s) | 851 |
| BspT107I | GGYRCC | 1 cut(s) | 849 |
| BspTNI | GGTCTC | 2 cut(s) | 13, 211 |
| BsrDI | GCAATG | 1 cut(s) | 627 |
| BsrI | ACTGG | 2 cut(s) | 312, 337 |
| BssECI | CCNNGG | 1 cut(s) | 459 |
| BssMI | GATC | 3 cut(s) | 41, 130, 272 |
| BssT1I | CCWWGG | 1 cut(s) | 459 |
| Bst2UI | CCWGG | 1 cut(s) | 395 |
| Bst6I | CTCTTC | 1 cut(s) | 504 |
| BstC8I | GCNNGC | 3 cut(s) | 180, 371, 429 |
| BstDEI | CTNAG | 8 cut(s) | 6, 95, 222, 283, 562, 586, 675, 840 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 843 |
| BstF5I | GGATG | 4 cut(s) | 294, 486, 514, 765 |
| BstFNI | CGCG | 1 cut(s) | 834 |
| BstHHI | GCGC | 1 cut(s) | 836 |
| BstKTI | GATC | 3 cut(s) | 44, 133, 275 |
| BstMAI | GTCTC | 3 cut(s) | 13, 104, 211 |
| BstMBI | GATC | 3 cut(s) | 41, 130, 272 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 443, 452, 464, 473 |
| BstNI | CCWGG | 1 cut(s) | 395 |
| BstSCI | CCNGG | 1 cut(s) | 393 |
| BstSFI | CTRYAG | 1 cut(s) | 232 |
| BstUI | CGCG | 1 cut(s) | 834 |
| BstV1I | GCAGC | 3 cut(s) | 60, 82, 467 |
| BstX2I | RGATCY | 1 cut(s) | 272 |
| BstYI | RGATCY | 1 cut(s) | 272 |
| Bsu36I | CCTNAGG | 1 cut(s) | 840 |
| BsuI | GTATCC | 1 cut(s) | 391 |
| BsuRI | GGCC | 1 cut(s) | 383 |
| BtsCI | GGATG | 4 cut(s) | 294, 486, 514, 765 |
| Cac8I | GCNNGC | 3 cut(s) | 180, 371, 429 |
| CciI | TCATGA | 1 cut(s) | 721 |
| CfoI | GCGC | 1 cut(s) | 836 |
| Cfr13I | GGNCC | 1 cut(s) | 896 |
| CviAII | CATG | 3 cut(s) | 722, 758, 796 |
| DdeI | CTNAG | 8 cut(s) | 6, 95, 222, 283, 562, 586, 675, 840 |
| DpnI | GATC | 3 cut(s) | 43, 132, 274 |
| DpnII | GATC | 3 cut(s) | 41, 130, 272 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 894 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 894 |
| Eam1104I | CTCTTC | 1 cut(s) | 504 |
| EarI | CTCTTC | 1 cut(s) | 504 |
| Ecl136II | GAGCTC | 1 cut(s) | 431 |
| Eco130I | CCWWGG | 1 cut(s) | 459 |
| Eco24I | GRGCYC | 1 cut(s) | 433 |
| Eco31I | GGTCTC | 2 cut(s) | 13, 211 |
| Eco32I | GATATC | 2 cut(s) | 344, 610 |
| Eco47I | GGWCC | 1 cut(s) | 896 |
| Eco53kI | GAGCTC | 1 cut(s) | 431 |
| Eco57I | CTGAAG | 1 cut(s) | 45 |
| Eco81I | CCTNAGG | 1 cut(s) | 840 |
| Eco88I | CYCGRG | 2 cut(s) | 167, 407 |
| EcoICRI | GAGCTC | 1 cut(s) | 431 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 843 |
| EcoRII | CCWGG | 1 cut(s) | 393 |
| EcoRV | GATATC | 2 cut(s) | 344, 610 |
| EcoT14I | CCWWGG | 1 cut(s) | 459 |
| EcoT38I | GRGCYC | 1 cut(s) | 433 |
| ErhI | CCWWGG | 1 cut(s) | 459 |
| FaeI | CATG | 3 cut(s) | 725, 761, 799 |
| FaqI | GGGAC | 1 cut(s) | 185 |
| FatI | CATG | 3 cut(s) | 721, 757, 795 |
| FauNDI | CATATG | 1 cut(s) | 504 |
| Fnu4HI | GCNGC | 3 cut(s) | 71, 74, 456 |
| FokI | GGATG | 4 cut(s) | 301, 473, 521, 752 |
| FriOI | GRGCYC | 1 cut(s) | 433 |
| Fsp4HI | GCNGC | 3 cut(s) | 71, 74, 456 |
| FspBI | CTAG | 2 cut(s) | 414, 873 |
| GlaI | GCGC | 1 cut(s) | 835 |
| GluI | GCNGC | 3 cut(s) | 71, 74, 456 |
| GsaI | CCCAGC | 1 cut(s) | 50 |
| GsuI | CTGGAG | 1 cut(s) | 58 |
| HaeIII | GGCC | 1 cut(s) | 383 |
| HhaI | GCGC | 1 cut(s) | 836 |
| Hin1II | CATG | 3 cut(s) | 725, 761, 799 |
| Hin6I | GCGC | 1 cut(s) | 834 |
| HinP1I | GCGC | 1 cut(s) | 834 |
| HindIII | AAGCTT | 2 cut(s) | 255, 435 |
| HinfI | GANTC | 7 cut(s) | 91, 97, 118, 390, 496, 637, 687 |
| Hpy188I | TCNGA | 3 cut(s) | 18, 96, 816 |
| Hpy188III | TCNNGA | 6 cut(s) | 339, 359, 407, 551, 722, 885 |
| HpyAV | CCTTC | 3 cut(s) | 196, 210, 658 |
| HpyCH4V | TGCA | 4 cut(s) | 178, 244, 620, 701 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 443, 452, 464, 473 |
| HpyF3I | CTNAG | 8 cut(s) | 6, 95, 222, 283, 562, 586, 675, 840 |
| Hsp92II | CATG | 3 cut(s) | 725, 761, 799 |
| HspAI | GCGC | 1 cut(s) | 834 |
| Kzo9I | GATC | 3 cut(s) | 41, 130, 272 |
| LmnI | GCTCC | 4 cut(s) | 187, 261, 322, 734 |
| Lsp1109I | GCAGC | 3 cut(s) | 60, 82, 467 |
| LweI | GCATC | 2 cut(s) | 382, 607 |
| MaeI | CTAG | 2 cut(s) | 414, 873 |
| MaeIII | GTNAC | 2 cut(s) | 293, 694 |
| MalI | GATC | 3 cut(s) | 43, 132, 274 |
| MboI | GATC | 3 cut(s) | 41, 130, 272 |
| MboII | GAAGA | 6 cut(s) | 38, 181, 195, 491, 787, 932 |
| MflI | RGATCY | 1 cut(s) | 272 |
| MhlI | GDGCHC | 1 cut(s) | 433 |
| MluCI | AATT | 7 cut(s) | 108, 402, 593, 627, 784, 823, 879 |
| MlyI | GAGTC | 5 cut(s) | 100, 106, 112, 490, 631 |
| MnlI | CCTC | 7 cut(s) | 26, 207, 457, 533, 835, 839, 910 |
| MroXI | GAANNNNTTC | 1 cut(s) | 570 |
| MseI | TTAA | 3 cut(s) | 266, 579, 626 |
| MslI | CAYNNNNRTG | 4 cut(s) | 491, 507, 531, 770 |
| MspA1I | CMGCKG | 1 cut(s) | 73 |
| MspR9I | CCNGG | 1 cut(s) | 395 |
| MvaI | CCWGG | 1 cut(s) | 395 |
| MvnI | CGCG | 1 cut(s) | 834 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 443, 452, 464, 473 |
| NdeI | CATATG | 1 cut(s) | 504 |
| NdeII | GATC | 3 cut(s) | 41, 130, 272 |
| NlaIII | CATG | 3 cut(s) | 725, 761, 799 |
| NlaIV | GGNNCC | 1 cut(s) | 851 |
| OliI | CACNNNNGTG | 1 cut(s) | 531 |
| PaeR7I | CTCGAG | 1 cut(s) | 407 |
| PagI | TCATGA | 1 cut(s) | 721 |
| PdmI | GAANNNNTTC | 1 cut(s) | 570 |
| PfeI | GAWTC | 2 cut(s) | 390, 687 |
| PfoI | TCCNGGA | 1 cut(s) | 393 |
| PkrI | GCNGC | 3 cut(s) | 72, 75, 457 |
| PleI | GAGTC | 5 cut(s) | 99, 105, 112, 490, 631 |
| PpsI | GAGTC | 5 cut(s) | 99, 105, 112, 490, 631 |
| Psp124BI | GAGCTC | 1 cut(s) | 433 |
| Psp6I | CCWGG | 1 cut(s) | 393 |
| PspFI | CCCAGC | 1 cut(s) | 46 |
| PspGI | CCWGG | 1 cut(s) | 393 |
| PspN4I | GGNNCC | 1 cut(s) | 851 |
| PspPI | GGNCC | 1 cut(s) | 896 |
| PsuI | RGATCY | 1 cut(s) | 272 |
| PvuII | CAGCTG | 1 cut(s) | 73 |
| RseI | CAYNNNNRTG | 4 cut(s) | 491, 507, 531, 770 |
| SacI | GAGCTC | 1 cut(s) | 433 |
| SaqAI | TTAA | 3 cut(s) | 266, 579, 626 |
| SatI | GCNGC | 3 cut(s) | 71, 74, 456 |
| Sau3AI | GATC | 3 cut(s) | 41, 130, 272 |
| Sau96I | GGNCC | 1 cut(s) | 896 |
| SchI | GAGTC | 5 cut(s) | 100, 106, 112, 490, 631 |
| ScrFI | CCNGG | 1 cut(s) | 395 |
| SduI | GDGCHC | 1 cut(s) | 433 |
| SfaNI | GCATC | 2 cut(s) | 382, 607 |
| SfcI | CTRYAG | 1 cut(s) | 232 |
| Sfr274I | CTCGAG | 1 cut(s) | 407 |
| SinI | GGWCC | 1 cut(s) | 896 |
| SlaI | CTCGAG | 1 cut(s) | 407 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 491, 507, 531, 770 |
| SmlI | CTYRAG | 3 cut(s) | 377, 407, 432 |
| SmoI | CTYRAG | 3 cut(s) | 377, 407, 432 |
| Sse9I | AATT | 7 cut(s) | 108, 402, 593, 627, 784, 823, 879 |
| SsiI | CCGC | 1 cut(s) | 928 |
| SspMI | CTAG | 2 cut(s) | 414, 873 |
| SstI | GAGCTC | 1 cut(s) | 433 |
| StyD4I | CCNGG | 1 cut(s) | 393 |
| StyI | CCWWGG | 1 cut(s) | 459 |
| TaqI | TCGA | 3 cut(s) | 133, 408, 685 |
| TasI | AATT | 7 cut(s) | 108, 402, 593, 627, 784, 823, 879 |
| TfiI | GAWTC | 2 cut(s) | 390, 687 |
| Tru1I | TTAA | 3 cut(s) | 266, 579, 626 |
| Tru9I | TTAA | 3 cut(s) | 266, 579, 626 |
| TseI | GCWGC | 3 cut(s) | 70, 73, 455 |
| TspDTI | ATGAA | 6 cut(s) | 120, 491, 710, 738, 755, 788 |
| VpaK11BI | GGWCC | 1 cut(s) | 896 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 843 |
| XapI | RAATTY | 2 cut(s) | 593, 879 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 391 |
| XhoI | CTCGAG | 1 cut(s) | 407 |
| XmnI | GAANNNNTTC | 1 cut(s) | 570 |
| XspI | CTAG | 2 cut(s) | 414, 873 |