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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 285, 330 |
| Acc65I | GGTACC | 1 cut(s) | 360 |
| AccB1I | GGYRCC | 4 cut(s) | 360, 506, 527, 548 |
| AccBSI | CCGCTC | 1 cut(s) | 358 |
| AciI | CCGC | 4 cut(s) | 358, 406, 427, 601 |
| AclWI | GGATC | 2 cut(s) | 218, 634 |
| AcuI | CTGAAG | 2 cut(s) | 213, 747 |
| AcvI | CACGTG | 2 cut(s) | 449, 467 |
| AcyI | GRCGYC | 3 cut(s) | 7, 507, 528 |
| AdeI | CACNNNGTG | 1 cut(s) | 452 |
| AfaI | GTAC | 3 cut(s) | 190, 362, 665 |
| AfeI | AGCGCT | 2 cut(s) | 75, 86 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 344, 345, 371, 415, 468 |
| AflIII | ACRYGT | 2 cut(s) | 446, 464 |
| AgsI | TTSAA | 3 cut(s) | 124, 291, 721 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 72, 104, 186, 218 |
| AluBI | AGCT | 4 cut(s) | 64, 127, 229, 725 |
| AluI | AGCT | 4 cut(s) | 64, 127, 229, 725 |
| Alw21I | GWGCWC | 2 cut(s) | 580, 741 |
| Alw44I | GTGCAC | 2 cut(s) | 576, 737 |
| AlwI | GGATC | 2 cut(s) | 218, 634 |
| Aor51HI | AGCGCT | 2 cut(s) | 75, 86 |
| AoxI | GGCC | 2 cut(s) | 293, 394 |
| ApaI | GGGCCC | 1 cut(s) | 398 |
| ApaLI | GTGCAC | 2 cut(s) | 576, 737 |
| Asp718I | GGTACC | 1 cut(s) | 360 |
| AspA2I | CCTAGG | 1 cut(s) | 560 |
| AspLEI | GCGC | 4 cut(s) | 76, 87, 509, 530 |
| AspS9I | GGNCC | 4 cut(s) | 294, 394, 395, 643 |
| AsuHPI | GGTGA | 1 cut(s) | 697 |
| AvaII | GGWCC | 1 cut(s) | 643 |
| AvrII | CCTAGG | 1 cut(s) | 560 |
| BaeGI | GKGCMC | 3 cut(s) | 398, 580, 741 |
| BanI | GGYRCC | 4 cut(s) | 360, 506, 527, 548 |
| BanII | GRGCYC | 1 cut(s) | 398 |
| BauI | CACGAG | 2 cut(s) | 214, 272 |
| BbrPI | CACGTG | 2 cut(s) | 449, 467 |
| Bbv12I | GWGCWC | 2 cut(s) | 580, 741 |
| BccI | CCATC | 1 cut(s) | 680 |
| BceAI | ACGGC | 1 cut(s) | 480 |
| BciVI | GTATCC | 2 cut(s) | 436, 497 |
| BfaI | CTAG | 3 cut(s) | 77, 492, 561 |
| BfmI | CTRYAG | 1 cut(s) | 246 |
| BfoI | RGCGCY | 4 cut(s) | 77, 88, 510, 531 |
| BfuI | GTATCC | 2 cut(s) | 436, 497 |
| BlnI | CCTAGG | 1 cut(s) | 560 |
| Bme18I | GGWCC | 1 cut(s) | 643 |
| BmgT120I | GGNCC | 4 cut(s) | 294, 394, 395, 643 |
| BmiI | GGNNCC | 7 cut(s) | 296, 362, 396, 508, 529, 550, 644 |
| BmsI | GCATC | 3 cut(s) | 43, 598, 736 |
| Bsa29I | ATCGAT | 1 cut(s) | 619 |
| BsaAI | YACGTR | 2 cut(s) | 449, 467 |
| BsaBI | GATNNNNATC | 2 cut(s) | 625, 699 |
| BsaHI | GRCGYC | 3 cut(s) | 7, 507, 528 |
| BsaJI | CCNNGG | 2 cut(s) | 298, 560 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 26, 56, 463, 493, 541, 571 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 344, 345, 371, 415, 468 |
| Bse3DI | GCAATG | 2 cut(s) | 100, 610 |
| Bse8I | GATNNNNATC | 2 cut(s) | 625, 699 |
| BseCI | ATCGAT | 1 cut(s) | 619 |
| BseDI | CCNNGG | 2 cut(s) | 298, 560 |
| BseGI | GGATG | 2 cut(s) | 58, 751 |
| BseJI | GATNNNNATC | 2 cut(s) | 625, 699 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 344, 345, 371, 415, 468 |
| BseMI | GCAATG | 2 cut(s) | 100, 610 |
| BseMII | CTCAG | 1 cut(s) | 638 |
| BseRI | GAGGAG | 1 cut(s) | 101 |
| BseSI | GKGCMC | 3 cut(s) | 398, 580, 741 |
| BshFI | GGCC | 2 cut(s) | 295, 396 |
| BshNI | GGYRCC | 4 cut(s) | 360, 506, 527, 548 |
| BshVI | ATCGAT | 1 cut(s) | 619 |
| BsiHKAI | GWGCWC | 2 cut(s) | 580, 741 |
| BslFI | GGGAC | 2 cut(s) | 399, 656 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 344, 345, 371, 415, 468 |
| BsmFI | GGGAC | 2 cut(s) | 399, 656 |
| BsnI | GGCC | 2 cut(s) | 295, 396 |
| Bsp120I | GGGCCC | 1 cut(s) | 394 |
| Bsp1286I | GDGCHC | 3 cut(s) | 398, 580, 741 |
| Bsp143I | GATC | 3 cut(s) | 45, 210, 626 |
| BspACI | CCGC | 4 cut(s) | 358, 406, 427, 601 |
| BspANI | GGCC | 2 cut(s) | 295, 396 |
| BspCNI | CTCAG | 1 cut(s) | 639 |
| BspDI | ATCGAT | 1 cut(s) | 619 |
| BspHI | TCATGA | 1 cut(s) | 316 |
| BspLI | GGNNCC | 7 cut(s) | 296, 362, 396, 508, 529, 550, 644 |
| BspPI | GGATC | 2 cut(s) | 218, 634 |
| BspQI | GCTCTTC | 1 cut(s) | 75 |
| BspT107I | GGYRCC | 4 cut(s) | 360, 506, 527, 548 |
| BsrBI | CCGCTC | 1 cut(s) | 358 |
| BsrDI | GCAATG | 2 cut(s) | 100, 610 |
| BssECI | CCNNGG | 2 cut(s) | 298, 560 |
| BssMI | GATC | 3 cut(s) | 45, 210, 626 |
| BssNI | GRCGYC | 3 cut(s) | 7, 507, 528 |
| BssSI | CACGAG | 2 cut(s) | 214, 272 |
| BssT1I | CCWWGG | 2 cut(s) | 298, 560 |
| Bst2BI | CACGAG | 2 cut(s) | 214, 272 |
| Bst4CI | ACNGT | 1 cut(s) | 188 |
| Bst6I | CTCTTC | 1 cut(s) | 75 |
| BstACI | GRCGYC | 3 cut(s) | 7, 507, 528 |
| BstBAI | YACGTR | 2 cut(s) | 449, 467 |
| BstDEI | CTNAG | 4 cut(s) | 26, 306, 366, 647 |
| BstF5I | GGATG | 2 cut(s) | 58, 751 |
| BstH2I | RGCGCY | 4 cut(s) | 77, 88, 510, 531 |
| BstHHI | GCGC | 4 cut(s) | 76, 87, 509, 530 |
| BstKTI | GATC | 3 cut(s) | 48, 213, 629 |
| BstMBI | GATC | 3 cut(s) | 45, 210, 626 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 82 |
| BstSFI | CTRYAG | 1 cut(s) | 246 |
| BstSLI | GKGCMC | 3 cut(s) | 398, 580, 741 |
| Bsu15I | ATCGAT | 1 cut(s) | 619 |
| BsuI | GTATCC | 2 cut(s) | 436, 497 |
| BsuRI | GGCC | 2 cut(s) | 295, 396 |
| BsuTUI | ATCGAT | 1 cut(s) | 619 |
| BtsCI | GGATG | 2 cut(s) | 58, 751 |
| CciI | TCATGA | 1 cut(s) | 316 |
| CfoI | GCGC | 4 cut(s) | 76, 87, 509, 530 |
| Cfr13I | GGNCC | 4 cut(s) | 294, 394, 395, 643 |
| ClaI | ATCGAT | 1 cut(s) | 619 |
| CseI | GACGC | 1 cut(s) | 15 |
| Csp6I | GTAC | 3 cut(s) | 189, 361, 664 |
| CviAII | CATG | 4 cut(s) | 260, 317, 482, 742 |
| CviJI | RGCY | 8 cut(s) | 64, 127, 164, 229, 295, 396, 495, 725 |
| CviKI_1 | RGCY | 8 cut(s) | 64, 127, 164, 229, 295, 396, 495, 725 |
| CviQI | GTAC | 3 cut(s) | 189, 361, 664 |
| DdeI | CTNAG | 4 cut(s) | 26, 306, 366, 647 |
| DinI | GGCGCC | 2 cut(s) | 508, 529 |
| DpnI | GATC | 3 cut(s) | 47, 212, 628 |
| DpnII | GATC | 3 cut(s) | 45, 210, 626 |
| DraIII | CACNNNGTG | 1 cut(s) | 452 |
| Eam1104I | CTCTTC | 1 cut(s) | 75 |
| EarI | CTCTTC | 1 cut(s) | 75 |
| Eco130I | CCWWGG | 2 cut(s) | 298, 560 |
| Eco24I | GRGCYC | 1 cut(s) | 398 |
| Eco47I | GGWCC | 1 cut(s) | 643 |
| Eco47III | AGCGCT | 2 cut(s) | 75, 86 |
| Eco57I | CTGAAG | 2 cut(s) | 213, 747 |
| Eco72I | CACGTG | 2 cut(s) | 449, 467 |
| EcoO109I | RGGNCCY | 2 cut(s) | 294, 643 |
| EcoT14I | CCWWGG | 2 cut(s) | 298, 560 |
| EcoT38I | GRGCYC | 1 cut(s) | 398 |
| EgeI | GGCGCC | 2 cut(s) | 508, 529 |
| EheI | GGCGCC | 2 cut(s) | 508, 529 |
| ErhI | CCWWGG | 2 cut(s) | 298, 560 |
| FaeI | CATG | 4 cut(s) | 263, 320, 485, 745 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 651, 683 |
| FaqI | GGGAC | 2 cut(s) | 399, 656 |
| FatI | CATG | 4 cut(s) | 259, 316, 481, 741 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FokI | GGATG | 2 cut(s) | 65, 758 |
| FriOI | GRGCYC | 1 cut(s) | 398 |
| FspBI | CTAG | 3 cut(s) | 77, 492, 561 |
| GlaI | GCGC | 4 cut(s) | 75, 86, 508, 529 |
| HaeII | RGCGCY | 4 cut(s) | 77, 88, 510, 531 |
| HaeIII | GGCC | 2 cut(s) | 295, 396 |
| HgaI | GACGC | 1 cut(s) | 15 |
| HhaI | GCGC | 4 cut(s) | 76, 87, 509, 530 |
| Hin1I | GRCGYC | 3 cut(s) | 7, 507, 528 |
| Hin1II | CATG | 4 cut(s) | 263, 320, 485, 745 |
| Hin6I | GCGC | 4 cut(s) | 74, 85, 507, 528 |
| HinP1I | GCGC | 4 cut(s) | 74, 85, 507, 528 |
| HinfI | GANTC | 1 cut(s) | 104 |
| HphI | GGTGA | 1 cut(s) | 697 |
| Hpy166II | GTNNAC | 3 cut(s) | 578, 664, 739 |
| Hpy188III | TCNNGA | 4 cut(s) | 214, 274, 317, 416 |
| Hpy8I | GTNNAC | 3 cut(s) | 578, 664, 739 |
| Hpy99I | CGWCG | 1 cut(s) | 9 |
| HpyAV | CCTTC | 2 cut(s) | 160, 413 |
| HpyCH4III | ACNGT | 1 cut(s) | 188 |
| HpyCH4IV | ACGT | 4 cut(s) | 388, 448, 466, 574 |
| HpyCH4V | TGCA | 7 cut(s) | 56, 335, 571, 578, 671, 739, 749 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 82 |
| HpyF3I | CTNAG | 4 cut(s) | 26, 306, 366, 647 |
| HpySE526I | ACGT | 4 cut(s) | 388, 448, 466, 574 |
| Hsp92I | GRCGYC | 3 cut(s) | 7, 507, 528 |
| Hsp92II | CATG | 4 cut(s) | 263, 320, 485, 745 |
| HspAI | GCGC | 4 cut(s) | 74, 85, 507, 528 |
| KasI | GGCGCC | 2 cut(s) | 506, 527 |
| KpnI | GGTACC | 1 cut(s) | 364 |
| Kzo9I | GATC | 3 cut(s) | 45, 210, 626 |
| LguI | GCTCTTC | 1 cut(s) | 75 |
| LmnI | GCTCC | 3 cut(s) | 348, 355, 562 |
| LpnPI | CCDG | 3 cut(s) | 129, 401, 659 |
| LweI | GCATC | 3 cut(s) | 43, 598, 736 |
| MaeI | CTAG | 3 cut(s) | 77, 492, 561 |
| MaeII | ACGT | 4 cut(s) | 388, 448, 466, 574 |
| MalI | GATC | 3 cut(s) | 47, 212, 628 |
| MbiI | CCGCTC | 1 cut(s) | 358 |
| MboI | GATC | 3 cut(s) | 45, 210, 626 |
| MboII | GAAGA | 5 cut(s) | 92, 686, 692, 695, 740 |
| MfeI | CAATTG | 1 cut(s) | 630 |
| MhlI | GDGCHC | 3 cut(s) | 398, 580, 741 |
| MluCI | AATT | 6 cut(s) | 129, 280, 286, 325, 584, 630 |
| Mly113I | GGCGCC | 2 cut(s) | 507, 528 |
| MmeI | TCCRAC | 1 cut(s) | 184 |
| MseI | TTAA | 1 cut(s) | 587 |
| MslI | CAYNNNNRTG | 3 cut(s) | 272, 621, 744 |
| MunI | CAATTG | 1 cut(s) | 630 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 82 |
| NarI | GGCGCC | 2 cut(s) | 507, 528 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 3 cut(s) | 45, 210, 626 |
| NlaIII | CATG | 4 cut(s) | 263, 320, 485, 745 |
| NlaIV | GGNNCC | 7 cut(s) | 296, 362, 396, 508, 529, 550, 644 |
| PagI | TCATGA | 1 cut(s) | 316 |
| PciSI | GCTCTTC | 1 cut(s) | 75 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PluTI | GGCGCC | 2 cut(s) | 510, 531 |
| PmaCI | CACGTG | 2 cut(s) | 449, 467 |
| PmlI | CACGTG | 2 cut(s) | 449, 467 |
| Ppu21I | YACGTR | 2 cut(s) | 449, 467 |
| PpuMI | RGGWCCY | 1 cut(s) | 643 |
| PsiI | TTATAA | 2 cut(s) | 285, 330 |
| Psp5II | RGGWCCY | 1 cut(s) | 643 |
| PspCI | CACGTG | 2 cut(s) | 449, 467 |
| PspN4I | GGNNCC | 7 cut(s) | 296, 362, 396, 508, 529, 550, 644 |
| PspOMI | GGGCCC | 1 cut(s) | 394 |
| PspPI | GGNCC | 4 cut(s) | 294, 394, 395, 643 |
| PspPPI | RGGWCCY | 1 cut(s) | 643 |
| RsaI | GTAC | 3 cut(s) | 190, 362, 665 |
| RsaNI | GTAC | 3 cut(s) | 189, 361, 664 |
| RseI | CAYNNNNRTG | 3 cut(s) | 272, 621, 744 |
| SapI | GCTCTTC | 1 cut(s) | 75 |
| SaqAI | TTAA | 1 cut(s) | 587 |
| Sau3AI | GATC | 3 cut(s) | 45, 210, 626 |
| Sau96I | GGNCC | 4 cut(s) | 294, 394, 395, 643 |
| SduI | GDGCHC | 3 cut(s) | 398, 580, 741 |
| SfaNI | GCATC | 3 cut(s) | 43, 598, 736 |
| SfcI | CTRYAG | 1 cut(s) | 246 |
| SfoI | GGCGCC | 2 cut(s) | 508, 529 |
| SinI | GGWCC | 1 cut(s) | 643 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 272, 621, 744 |
| Sse9I | AATT | 6 cut(s) | 129, 280, 286, 325, 584, 630 |
| SsiI | CCGC | 4 cut(s) | 358, 406, 427, 601 |
| SspDI | GGCGCC | 2 cut(s) | 506, 527 |
| SspMI | CTAG | 3 cut(s) | 77, 492, 561 |
| StyI | CCWWGG | 2 cut(s) | 298, 560 |
| TaaI | ACNGT | 1 cut(s) | 188 |
| TaiI | ACGT | 4 cut(s) | 391, 451, 469, 577 |
| TaqI | TCGA | 2 cut(s) | 44, 619 |
| TasI | AATT | 6 cut(s) | 129, 280, 286, 325, 584, 630 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| Tru1I | TTAA | 1 cut(s) | 587 |
| Tru9I | TTAA | 1 cut(s) | 587 |
| TspDTI | ATGAA | 4 cut(s) | 212, 305, 693, 747 |
| TspGWI | ACGGA | 1 cut(s) | 223 |
| VneI | GTGCAC | 2 cut(s) | 576, 737 |
| VpaK11BI | GGWCC | 1 cut(s) | 643 |
| XmaJI | CCTAGG | 1 cut(s) | 560 |
| XspI | CTAG | 3 cut(s) | 77, 492, 561 |