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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 612 |
| AciI | CCGC | 1 cut(s) | 250 |
| AcoI | YGGCCR | 1 cut(s) | 496 |
| AdeI | CACNNNGTG | 1 cut(s) | 682 |
| AfaI | GTAC | 1 cut(s) | 112 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 612 |
| AgsI | TTSAA | 3 cut(s) | 13, 265, 547 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AleI | CACNNNNGTG | 1 cut(s) | 624 |
| AluBI | AGCT | 3 cut(s) | 155, 161, 674 |
| AluI | AGCT | 3 cut(s) | 155, 161, 674 |
| Alw26I | GTCTC | 1 cut(s) | 385 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 2 cut(s) | 93, 496 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 294 |
| AspA2I | CCTAGG | 1 cut(s) | 106 |
| AsuHPI | GGTGA | 1 cut(s) | 631 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvrII | CCTAGG | 1 cut(s) | 106 |
| BalI | TGGCCA | 1 cut(s) | 498 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 3 cut(s) | 215, 385, 537 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 404, 438 |
| BciVI | GTATCC | 1 cut(s) | 613 |
| BcoDI | GTCTC | 1 cut(s) | 385 |
| BfaI | CTAG | 4 cut(s) | 20, 107, 126, 710 |
| BfmI | CTRYAG | 1 cut(s) | 423 |
| BfuI | GTATCC | 1 cut(s) | 613 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlnI | CCTAGG | 1 cut(s) | 106 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 1 cut(s) | 511 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 414 |
| BsaJI | CCNNGG | 1 cut(s) | 106 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 612 |
| Bse118I | RCCGGY | 1 cut(s) | 641 |
| Bse1I | ACTGG | 2 cut(s) | 49, 606 |
| BseCI | ATCGAT | 1 cut(s) | 414 |
| BseDI | CCNNGG | 1 cut(s) | 106 |
| BseGI | GGATG | 2 cut(s) | 210, 238 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 612 |
| BseMII | CTCAG | 1 cut(s) | 561 |
| BseNI | ACTGG | 2 cut(s) | 49, 606 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 2 cut(s) | 95, 498 |
| BshVI | ATCGAT | 1 cut(s) | 414 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 642 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 612 |
| BsmAI | GTCTC | 1 cut(s) | 385 |
| BsmBI | CGTCTC | 1 cut(s) | 385 |
| BsnI | GGCC | 2 cut(s) | 95, 498 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp143I | GATC | 2 cut(s) | 694, 706 |
| BspACI | CCGC | 1 cut(s) | 250 |
| BspANI | GGCC | 2 cut(s) | 95, 498 |
| BspCNI | CTCAG | 1 cut(s) | 562 |
| BspDI | ATCGAT | 1 cut(s) | 414 |
| BspHI | TCATGA | 1 cut(s) | 70 |
| BspLI | GGNNCC | 1 cut(s) | 511 |
| BspMAI | CTGCAG | 1 cut(s) | 427 |
| BsrFI | RCCGGY | 1 cut(s) | 641 |
| BsrI | ACTGG | 2 cut(s) | 49, 606 |
| BssAI | RCCGGY | 1 cut(s) | 641 |
| BssECI | CCNNGG | 1 cut(s) | 106 |
| BssMI | GATC | 2 cut(s) | 694, 706 |
| BssT1I | CCWWGG | 1 cut(s) | 106 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 2 cut(s) | 451, 571 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 4 cut(s) | 184, 399, 522, 570 |
| BstF5I | GGATG | 2 cut(s) | 210, 238 |
| BstKTI | GATC | 2 cut(s) | 697, 709 |
| BstMAI | GTCTC | 1 cut(s) | 385 |
| BstMBI | GATC | 2 cut(s) | 694, 706 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 671 |
| BstSFI | CTRYAG | 1 cut(s) | 423 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 506 |
| Bsu15I | ATCGAT | 1 cut(s) | 414 |
| BsuI | GTATCC | 1 cut(s) | 613 |
| BsuRI | GGCC | 2 cut(s) | 95, 498 |
| BsuTUI | ATCGAT | 1 cut(s) | 414 |
| BtgZI | GCGATG | 1 cut(s) | 359 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 2 cut(s) | 210, 238 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 1 cut(s) | 70 |
| Cfr10I | RCCGGY | 1 cut(s) | 641 |
| ClaI | ATCGAT | 1 cut(s) | 414 |
| CseI | GACGC | 1 cut(s) | 548 |
| Csp6I | GTAC | 1 cut(s) | 111 |
| CviAII | CATG | 2 cut(s) | 71, 500 |
| CviQI | GTAC | 1 cut(s) | 111 |
| DdeI | CTNAG | 4 cut(s) | 184, 399, 522, 570 |
| DpnI | GATC | 2 cut(s) | 696, 708 |
| DpnII | GATC | 2 cut(s) | 694, 706 |
| DraIII | CACNNNGTG | 1 cut(s) | 682 |
| EaeI | YGGCCR | 1 cut(s) | 496 |
| Eam1104I | CTCTTC | 2 cut(s) | 451, 571 |
| EarI | CTCTTC | 2 cut(s) | 451, 571 |
| Eco130I | CCWWGG | 1 cut(s) | 106 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT14I | CCWWGG | 1 cut(s) | 106 |
| ErhI | CCWWGG | 1 cut(s) | 106 |
| Esp3I | CGTCTC | 1 cut(s) | 385 |
| FaeI | CATG | 2 cut(s) | 74, 503 |
| FaiI | YATR | 9 cut(s) | 72, 228, 230, 282, 322, 501, 586, 655, 681 |
| FatI | CATG | 2 cut(s) | 70, 499 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 2 cut(s) | 197, 245 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 4 cut(s) | 20, 107, 126, 710 |
| GluI | GCNGC | 1 cut(s) | 180 |
| HaeIII | GGCC | 2 cut(s) | 95, 498 |
| HapII | CCGG | 1 cut(s) | 642 |
| HgaI | GACGC | 1 cut(s) | 548 |
| Hin1II | CATG | 2 cut(s) | 74, 503 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 7 cut(s) | 102, 115, 220, 236, 432, 451, 566 |
| HpaII | CCGG | 1 cut(s) | 642 |
| HphI | GGTGA | 1 cut(s) | 631 |
| Hpy166II | GTNNAC | 1 cut(s) | 464 |
| Hpy188I | TCNGA | 2 cut(s) | 289, 571 |
| Hpy188III | TCNNGA | 6 cut(s) | 51, 71, 119, 275, 591, 710 |
| Hpy8I | GTNNAC | 1 cut(s) | 464 |
| HpyAV | CCTTC | 1 cut(s) | 382 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 466 |
| HpyCH4V | TGCA | 2 cut(s) | 386, 425 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 671 |
| HpyF3I | CTNAG | 4 cut(s) | 184, 399, 522, 570 |
| HpySE526I | ACGT | 2 cut(s) | 135, 466 |
| Hsp92II | CATG | 2 cut(s) | 74, 503 |
| Kzo9I | GATC | 2 cut(s) | 694, 706 |
| LmnI | GCTCC | 2 cut(s) | 34, 515 |
| LpnPI | CCDG | 7 cut(s) | 30, 36, 95, 411, 480, 619, 655 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 4 cut(s) | 20, 107, 126, 710 |
| MaeII | ACGT | 2 cut(s) | 135, 466 |
| MaeIII | GTNAC | 3 cut(s) | 5, 418, 637 |
| MalI | GATC | 2 cut(s) | 696, 708 |
| MboI | GATC | 2 cut(s) | 694, 706 |
| MboII | GAAGA | 4 cut(s) | 468, 588, 641, 704 |
| MlsI | TGGCCA | 1 cut(s) | 498 |
| MluCI | AATT | 2 cut(s) | 317, 633 |
| MluNI | TGGCCA | 1 cut(s) | 498 |
| MlyI | GAGTC | 2 cut(s) | 214, 575 |
| MnlI | CCTC | 7 cut(s) | 181, 257, 452, 472, 476, 502, 564 |
| Mox20I | TGGCCA | 1 cut(s) | 498 |
| MroXI | GAANNNNTTC | 1 cut(s) | 294 |
| MscI | TGGCCA | 1 cut(s) | 498 |
| MseI | TTAA | 3 cut(s) | 303, 311, 354 |
| MslI | CAYNNNNRTG | 5 cut(s) | 215, 231, 504, 534, 624 |
| Msp20I | TGGCCA | 1 cut(s) | 498 |
| MspI | CCGG | 1 cut(s) | 642 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 671 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 2 cut(s) | 694, 706 |
| NlaIII | CATG | 2 cut(s) | 74, 503 |
| NlaIV | GGNNCC | 1 cut(s) | 511 |
| NmuCI | GTSAC | 1 cut(s) | 637 |
| OliI | CACNNNNGTG | 1 cut(s) | 624 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 70 |
| PdmI | GAANNNNTTC | 1 cut(s) | 294 |
| PfeI | GAWTC | 5 cut(s) | 102, 115, 236, 432, 451 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 612 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 2 cut(s) | 214, 574 |
| PpsI | GAGTC | 2 cut(s) | 214, 574 |
| PspN4I | GGNNCC | 1 cut(s) | 511 |
| PstI | CTGCAG | 1 cut(s) | 427 |
| RsaI | GTAC | 1 cut(s) | 112 |
| RsaNI | GTAC | 1 cut(s) | 111 |
| RseI | CAYNNNNRTG | 5 cut(s) | 215, 231, 504, 534, 624 |
| SaqAI | TTAA | 3 cut(s) | 303, 311, 354 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 2 cut(s) | 694, 706 |
| SchI | GAGTC | 2 cut(s) | 214, 575 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| SfcI | CTRYAG | 1 cut(s) | 423 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 215, 231, 504, 534, 624 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 2 cut(s) | 317, 633 |
| SsiI | CCGC | 1 cut(s) | 250 |
| SspMI | CTAG | 4 cut(s) | 20, 107, 126, 710 |
| StyI | CCWWGG | 1 cut(s) | 106 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 2 cut(s) | 138, 469 |
| TaqI | TCGA | 4 cut(s) | 120, 414, 454, 592 |
| TasI | AATT | 2 cut(s) | 317, 633 |
| TfiI | GAWTC | 5 cut(s) | 102, 115, 236, 432, 451 |
| Tru1I | TTAA | 3 cut(s) | 303, 311, 354 |
| Tru9I | TTAA | 3 cut(s) | 303, 311, 354 |
| TseFI | GTSAC | 1 cut(s) | 637 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 637 |
| TspDTI | ATGAA | 1 cut(s) | 59 |
| TspGWI | ACGGA | 1 cut(s) | 463 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 612 |
| XbaI | TCTAGA | 1 cut(s) | 709 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmaJI | CCTAGG | 1 cut(s) | 106 |
| XmnI | GAANNNNTTC | 1 cut(s) | 294 |
| XspI | CTAG | 4 cut(s) | 20, 107, 126, 710 |