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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 315 |
| AciI | CCGC | 1 cut(s) | 79 |
| AcyI | GRCGYC | 1 cut(s) | 312 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 112 |
| AgsI | TTSAA | 1 cut(s) | 376 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AleI | CACNNNNGTG | 1 cut(s) | 366 |
| AluBI | AGCT | 1 cut(s) | 161 |
| AluI | AGCT | 1 cut(s) | 161 |
| Alw26I | GTCTC | 2 cut(s) | 292, 496 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 93 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AsuC2I | CCSGG | 1 cut(s) | 398 |
| AsuHPI | GGTGA | 2 cut(s) | 211, 320 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| BccI | CCATC | 4 cut(s) | 92, 215, 342, 496 |
| BcnI | CCSGG | 1 cut(s) | 398 |
| BcoDI | GTCTC | 2 cut(s) | 292, 496 |
| BfaI | CTAG | 2 cut(s) | 126, 338 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| Bme1390I | CCNGG | 1 cut(s) | 398 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmrFI | CCNGG | 1 cut(s) | 398 |
| BmsI | GCATC | 1 cut(s) | 442 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| BpuMI | CCSGG | 1 cut(s) | 398 |
| BsaHI | GRCGYC | 1 cut(s) | 312 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 112 |
| Bse1I | ACTGG | 2 cut(s) | 49, 244 |
| BseGI | GGATG | 2 cut(s) | 210, 238 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 112 |
| BseNI | ACTGG | 2 cut(s) | 49, 244 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 398 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 112 |
| BsmAI | GTCTC | 2 cut(s) | 292, 496 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| BsnI | GGCC | 1 cut(s) | 95 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp143I | GATC | 2 cut(s) | 154, 444 |
| BspACI | CCGC | 1 cut(s) | 79 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 2 cut(s) | 49, 244 |
| BssMI | GATC | 2 cut(s) | 154, 444 |
| BssNI | GRCGYC | 1 cut(s) | 312 |
| Bst4CI | ACNGT | 2 cut(s) | 115, 145 |
| Bst6I | CTCTTC | 1 cut(s) | 336 |
| BstACI | GRCGYC | 1 cut(s) | 312 |
| BstDEI | CTNAG | 2 cut(s) | 184, 510 |
| BstF5I | GGATG | 2 cut(s) | 210, 238 |
| BstKTI | GATC | 2 cut(s) | 157, 447 |
| BstMAI | GTCTC | 2 cut(s) | 292, 496 |
| BstMBI | GATC | 2 cut(s) | 154, 444 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 188 |
| BstSCI | CCNGG | 1 cut(s) | 396 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 2 cut(s) | 210, 238 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviJI | RGCY | 9 cut(s) | 48, 95, 124, 129, 161, 182, 206, 280, 357 |
| CviKI_1 | RGCY | 9 cut(s) | 48, 95, 124, 129, 161, 182, 206, 280, 357 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 2 cut(s) | 184, 510 |
| DpnI | GATC | 2 cut(s) | 156, 446 |
| DpnII | GATC | 2 cut(s) | 154, 444 |
| Eam1104I | CTCTTC | 1 cut(s) | 336 |
| EarI | CTCTTC | 1 cut(s) | 336 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 2 cut(s) | 56, 76 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoRV | GATATC | 2 cut(s) | 56, 76 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaiI | YATR | 5 cut(s) | 228, 230, 257, 354, 433 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FokI | GGATG | 2 cut(s) | 197, 245 |
| FspBI | CTAG | 2 cut(s) | 126, 338 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HapII | CCGG | 1 cut(s) | 398 |
| Hin1I | GRCGYC | 1 cut(s) | 312 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 5 cut(s) | 102, 220, 236, 320, 472 |
| HpaII | CCGG | 1 cut(s) | 398 |
| HphI | GGTGA | 2 cut(s) | 211, 320 |
| Hpy188III | TCNNGA | 6 cut(s) | 51, 71, 106, 119, 332, 386 |
| HpyAV | CCTTC | 2 cut(s) | 270, 493 |
| HpyCH4III | ACNGT | 2 cut(s) | 115, 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 312 |
| HpyCH4V | TGCA | 1 cut(s) | 497 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 188 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 510 |
| HpySE526I | ACGT | 2 cut(s) | 135, 312 |
| Hsp92I | GRCGYC | 1 cut(s) | 312 |
| Kzo9I | GATC | 2 cut(s) | 154, 444 |
| LmnI | GCTCC | 2 cut(s) | 34, 246 |
| LpnPI | CCDG | 7 cut(s) | 23, 30, 36, 119, 257, 345, 411 |
| LweI | GCATC | 1 cut(s) | 442 |
| MaeI | CTAG | 2 cut(s) | 126, 338 |
| MaeII | ACGT | 2 cut(s) | 135, 312 |
| MaeIII | GTNAC | 3 cut(s) | 5, 308, 317 |
| MalI | GATC | 2 cut(s) | 156, 446 |
| MboI | GATC | 2 cut(s) | 154, 444 |
| MboII | GAAGA | 5 cut(s) | 275, 278, 308, 353, 481 |
| MluCI | AATT | 2 cut(s) | 17, 428 |
| MlyI | GAGTC | 3 cut(s) | 214, 314, 466 |
| MnlI | CCTC | 2 cut(s) | 181, 368 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 2 cut(s) | 414, 422 |
| MslI | CAYNNNNRTG | 3 cut(s) | 215, 231, 366 |
| MspI | CCGG | 1 cut(s) | 398 |
| MspR9I | CCNGG | 1 cut(s) | 398 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 188 |
| NciI | CCSGG | 1 cut(s) | 398 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 2 cut(s) | 154, 444 |
| NmuCI | GTSAC | 2 cut(s) | 308, 317 |
| OliI | CACNNNNGTG | 1 cut(s) | 366 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 2 cut(s) | 102, 236 |
| PleI | GAGTC | 3 cut(s) | 214, 314, 466 |
| PpsI | GAGTC | 3 cut(s) | 214, 314, 466 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 3 cut(s) | 215, 231, 366 |
| SaqAI | TTAA | 2 cut(s) | 414, 422 |
| Sau3AI | GATC | 2 cut(s) | 154, 444 |
| SchI | GAGTC | 3 cut(s) | 214, 314, 466 |
| ScrFI | CCNGG | 1 cut(s) | 398 |
| SetI | ASST | 7 cut(s) | 12, 138, 163, 201, 315, 339, 485 |
| SfaNI | GCATC | 1 cut(s) | 442 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 215, 231, 366 |
| SmlI | CTYRAG | 2 cut(s) | 89, 119 |
| SmoI | CTYRAG | 2 cut(s) | 89, 119 |
| Sse9I | AATT | 2 cut(s) | 17, 428 |
| SsiI | CCGC | 1 cut(s) | 79 |
| SspMI | CTAG | 2 cut(s) | 126, 338 |
| StyD4I | CCNGG | 1 cut(s) | 396 |
| TaaI | ACNGT | 2 cut(s) | 115, 145 |
| TaiI | ACGT | 2 cut(s) | 138, 315 |
| TaqI | TCGA | 2 cut(s) | 120, 294 |
| TasI | AATT | 2 cut(s) | 17, 428 |
| TfiI | GAWTC | 2 cut(s) | 102, 236 |
| Tru1I | TTAA | 2 cut(s) | 414, 422 |
| Tru9I | TTAA | 2 cut(s) | 414, 422 |
| TseFI | GTSAC | 2 cut(s) | 308, 317 |
| Tsp45I | GTSAC | 2 cut(s) | 308, 317 |
| TspGWI | ACGGA | 1 cut(s) | 305 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 279 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 2 cut(s) | 126, 338 |
| ZraI | GACGTC | 1 cut(s) | 313 |