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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 489, 534 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 308 |
| Acc65I | GGTACC | 1 cut(s) | 564 |
| AccB1I | GGYRCC | 2 cut(s) | 121, 564 |
| AccBSI | CCGCTC | 1 cut(s) | 562 |
| AccI | GTMKAC | 1 cut(s) | 588 |
| AciI | CCGC | 5 cut(s) | 129, 562, 613, 743, 990 |
| AclWI | GGATC | 1 cut(s) | 823 |
| AcoI | YGGCCR | 1 cut(s) | 225 |
| AcvI | CACGTG | 2 cut(s) | 635, 653 |
| AcyI | GRCGYC | 1 cut(s) | 190 |
| AdeI | CACNNNGTG | 2 cut(s) | 638, 764 |
| AfaI | GTAC | 3 cut(s) | 566, 853, 881 |
| AfeI | AGCGCT | 2 cut(s) | 258, 269 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 131, 548, 549, 579, 598, 599, 654, 748 |
| AflIII | ACRYGT | 3 cut(s) | 632, 650, 798 |
| AgsI | TTSAA | 5 cut(s) | 29, 307, 427, 495, 961 |
| AjiI | CACGTC | 1 cut(s) | 799 |
| AjnI | CCWGG | 1 cut(s) | 117 |
| AluBI | AGCT | 5 cut(s) | 331, 433, 863, 905, 965 |
| AluI | AGCT | 5 cut(s) | 331, 433, 863, 905, 965 |
| Alw21I | GWGCWC | 2 cut(s) | 769, 981 |
| Alw44I | GTGCAC | 1 cut(s) | 765 |
| AlwI | GGATC | 1 cut(s) | 823 |
| Aor51HI | AGCGCT | 2 cut(s) | 258, 269 |
| AoxI | GGCC | 5 cut(s) | 133, 225, 497, 682, 697 |
| ApaLI | GTGCAC | 1 cut(s) | 765 |
| ApeKI | GCWGC | 3 cut(s) | 365, 732, 863 |
| Asp718I | GGTACC | 1 cut(s) | 564 |
| AspA2I | CCTAGG | 1 cut(s) | 746 |
| AspLEI | GCGC | 3 cut(s) | 259, 270, 555 |
| AspS9I | GGNCC | 5 cut(s) | 244, 310, 498, 682, 697 |
| AsuHPI | GGTGA | 3 cut(s) | 899, 937, 941 |
| AvaII | GGWCC | 2 cut(s) | 244, 310 |
| AvrII | CCTAGG | 1 cut(s) | 746 |
| BaeGI | GKGCMC | 1 cut(s) | 769 |
| BalI | TGGCCA | 1 cut(s) | 227 |
| BanI | GGYRCC | 2 cut(s) | 121, 564 |
| BauI | CACGAG | 1 cut(s) | 980 |
| BbrPI | CACGTG | 2 cut(s) | 635, 653 |
| BbsI | GAAGAC | 2 cut(s) | 74, 347 |
| Bbv12I | GWGCWC | 2 cut(s) | 769, 981 |
| BbvI | GCAGC | 3 cut(s) | 377, 744, 850 |
| BccI | CCATC | 3 cut(s) | 93, 236, 920 |
| BceAI | ACGGC | 3 cut(s) | 669, 684, 705 |
| BciT130I | CCWGG | 1 cut(s) | 119 |
| BfaI | CTAG | 4 cut(s) | 15, 260, 747, 860 |
| BfoI | RGCGCY | 2 cut(s) | 260, 271 |
| BisI | GCNGC | 5 cut(s) | 366, 613, 733, 864, 990 |
| BlnI | CCTAGG | 1 cut(s) | 746 |
| BlsI | GCNGC | 5 cut(s) | 367, 614, 734, 865, 991 |
| Bme1390I | CCNGG | 1 cut(s) | 119 |
| Bme18I | GGWCC | 2 cut(s) | 244, 310 |
| BmgBI | CACGTC | 1 cut(s) | 799 |
| BmgT120I | GGNCC | 5 cut(s) | 244, 310, 498, 682, 697 |
| BmiI | GGNNCC | 3 cut(s) | 123, 245, 566 |
| BmrFI | CCNGG | 1 cut(s) | 119 |
| BmsI | GCATC | 3 cut(s) | 174, 226, 976 |
| BoxI | GACNNNNGTC | 1 cut(s) | 801 |
| BpiI | GAAGAC | 2 cut(s) | 74, 347 |
| Bsa29I | ATCGAT | 1 cut(s) | 822 |
| BsaAI | YACGTR | 2 cut(s) | 635, 653 |
| BsaHI | GRCGYC | 1 cut(s) | 190 |
| BsaJI | CCNNGG | 5 cut(s) | 678, 693, 700, 721, 746 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 131, 548, 549, 579, 598, 599, 654, 748 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| Bse3DI | GCAATG | 2 cut(s) | 400, 845 |
| BseBI | CCWGG | 1 cut(s) | 119 |
| BseCI | ATCGAT | 1 cut(s) | 822 |
| BseDI | CCNNGG | 5 cut(s) | 678, 693, 700, 721, 746 |
| BseGI | GGATG | 1 cut(s) | 991 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 131, 548, 549, 579, 598, 599, 654, 748 |
| BseMI | GCAATG | 2 cut(s) | 400, 845 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseSI | GKGCMC | 1 cut(s) | 769 |
| BseXI | GCAGC | 3 cut(s) | 377, 744, 850 |
| BsgI | GTGCAG | 1 cut(s) | 849 |
| BshFI | GGCC | 5 cut(s) | 135, 227, 499, 684, 699 |
| BshNI | GGYRCC | 2 cut(s) | 121, 564 |
| BshVI | ATCGAT | 1 cut(s) | 822 |
| BsiHKAI | GWGCWC | 2 cut(s) | 769, 981 |
| BslFI | GGGAC | 2 cut(s) | 257, 615 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 131, 548, 549, 579, 598, 599, 654, 748 |
| BsmFI | GGGAC | 2 cut(s) | 257, 615 |
| BsmI | GAATGC | 1 cut(s) | 516 |
| BsnI | GGCC | 5 cut(s) | 135, 227, 499, 684, 699 |
| Bsp1286I | GDGCHC | 2 cut(s) | 769, 981 |
| Bsp143I | GATC | 2 cut(s) | 815, 823 |
| Bsp19I | CCATGG | 1 cut(s) | 678 |
| BspACI | CCGC | 5 cut(s) | 129, 562, 613, 743, 990 |
| BspANI | GGCC | 5 cut(s) | 135, 227, 499, 684, 699 |
| BspDI | ATCGAT | 1 cut(s) | 822 |
| BspLI | GGNNCC | 3 cut(s) | 123, 245, 566 |
| BspPI | GGATC | 1 cut(s) | 823 |
| BspQI | GCTCTTC | 3 cut(s) | 258, 321, 969 |
| BspT107I | GGYRCC | 2 cut(s) | 121, 564 |
| BsrBI | CCGCTC | 1 cut(s) | 562 |
| BsrDI | GCAATG | 2 cut(s) | 400, 845 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssECI | CCNNGG | 5 cut(s) | 678, 693, 700, 721, 746 |
| BssMI | GATC | 2 cut(s) | 815, 823 |
| BssNAI | GTATAC | 1 cut(s) | 589 |
| BssNI | GRCGYC | 1 cut(s) | 190 |
| BssSI | CACGAG | 1 cut(s) | 980 |
| BssT1I | CCWWGG | 2 cut(s) | 678, 746 |
| Bst1107I | GTATAC | 1 cut(s) | 589 |
| Bst2BI | CACGAG | 1 cut(s) | 980 |
| Bst2UI | CCWGG | 1 cut(s) | 119 |
| Bst4CI | ACNGT | 1 cut(s) | 694 |
| Bst6I | CTCTTC | 4 cut(s) | 258, 321, 655, 969 |
| BstACI | GRCGYC | 1 cut(s) | 190 |
| BstBAI | YACGTR | 2 cut(s) | 635, 653 |
| BstC8I | GCNNGC | 4 cut(s) | 133, 165, 628, 868 |
| BstDSI | CCRYGG | 4 cut(s) | 678, 693, 700, 721 |
| BstF5I | GGATG | 1 cut(s) | 991 |
| BstH2I | RGCGCY | 2 cut(s) | 260, 271 |
| BstHHI | GCGC | 3 cut(s) | 259, 270, 555 |
| BstKTI | GATC | 2 cut(s) | 818, 826 |
| BstMBI | GATC | 2 cut(s) | 815, 823 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 128, 265, 559, 717, 911 |
| BstNI | CCWGG | 1 cut(s) | 119 |
| BstNSI | RCATGY | 2 cut(s) | 167, 587 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 801 |
| BstSCI | CCNGG | 1 cut(s) | 117 |
| BstSLI | GKGCMC | 1 cut(s) | 769 |
| BstV1I | GCAGC | 3 cut(s) | 377, 744, 850 |
| BstV2I | GAAGAC | 2 cut(s) | 74, 347 |
| BstZ17I | GTATAC | 1 cut(s) | 589 |
| Bsu15I | ATCGAT | 1 cut(s) | 822 |
| BsuRI | GGCC | 5 cut(s) | 135, 227, 499, 684, 699 |
| BsuTUI | ATCGAT | 1 cut(s) | 822 |
| BtgI | CCRYGG | 4 cut(s) | 678, 693, 700, 721 |
| BtrI | CACGTC | 1 cut(s) | 799 |
| BtsCI | GGATG | 1 cut(s) | 991 |
| Cac8I | GCNNGC | 4 cut(s) | 133, 165, 628, 868 |
| CfoI | GCGC | 3 cut(s) | 259, 270, 555 |
| Cfr13I | GGNCC | 5 cut(s) | 244, 310, 498, 682, 697 |
| ClaI | ATCGAT | 1 cut(s) | 822 |
| CseI | GACGC | 1 cut(s) | 198 |
| Csp6I | GTAC | 3 cut(s) | 565, 852, 880 |
| CviAII | CATG | 3 cut(s) | 164, 584, 679 |
| CviQI | GTAC | 3 cut(s) | 565, 852, 880 |
| DpnI | GATC | 2 cut(s) | 817, 825 |
| DpnII | GATC | 2 cut(s) | 815, 823 |
| DraIII | CACNNNGTG | 2 cut(s) | 638, 764 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 308 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 308 |
| EaeI | YGGCCR | 1 cut(s) | 225 |
| Eam1104I | CTCTTC | 4 cut(s) | 258, 321, 655, 969 |
| EarI | CTCTTC | 4 cut(s) | 258, 321, 655, 969 |
| Eco130I | CCWWGG | 2 cut(s) | 678, 746 |
| Eco147I | AGGCCT | 1 cut(s) | 135 |
| Eco47I | GGWCC | 2 cut(s) | 244, 310 |
| Eco47III | AGCGCT | 2 cut(s) | 258, 269 |
| Eco72I | CACGTG | 2 cut(s) | 635, 653 |
| EcoO109I | RGGNCCY | 1 cut(s) | 244 |
| EcoRII | CCWGG | 1 cut(s) | 117 |
| EcoT14I | CCWWGG | 2 cut(s) | 678, 746 |
| ErhI | CCWWGG | 2 cut(s) | 678, 746 |
| FaeI | CATG | 3 cut(s) | 167, 587, 682 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 894, 926 |
| FaqI | GGGAC | 2 cut(s) | 257, 615 |
| FatI | CATG | 3 cut(s) | 163, 583, 678 |
| FauI | CCCGC | 1 cut(s) | 750 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| FblI | GTMKAC | 1 cut(s) | 588 |
| Fnu4HI | GCNGC | 5 cut(s) | 366, 613, 733, 864, 990 |
| FokI | GGATG | 1 cut(s) | 998 |
| Fsp4HI | GCNGC | 5 cut(s) | 366, 613, 733, 864, 990 |
| FspBI | CTAG | 4 cut(s) | 15, 260, 747, 860 |
| GlaI | GCGC | 3 cut(s) | 258, 269, 554 |
| GluI | GCNGC | 5 cut(s) | 366, 613, 733, 864, 990 |
| HaeII | RGCGCY | 2 cut(s) | 260, 271 |
| HaeIII | GGCC | 5 cut(s) | 135, 227, 499, 684, 699 |
| HgaI | GACGC | 1 cut(s) | 198 |
| HhaI | GCGC | 3 cut(s) | 259, 270, 555 |
| Hin1I | GRCGYC | 1 cut(s) | 190 |
| Hin1II | CATG | 3 cut(s) | 167, 587, 682 |
| Hin6I | GCGC | 3 cut(s) | 257, 268, 553 |
| HinP1I | GCGC | 3 cut(s) | 257, 268, 553 |
| HincII | GTYRAC | 1 cut(s) | 787 |
| HindII | GTYRAC | 1 cut(s) | 787 |
| HinfI | GANTC | 4 cut(s) | 18, 38, 287, 343 |
| HphI | GGTGA | 3 cut(s) | 899, 937, 941 |
| Hpy166II | GTNNAC | 4 cut(s) | 589, 767, 787, 854 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 212 |
| Hpy188III | TCNNGA | 2 cut(s) | 181, 521 |
| Hpy8I | GTNNAC | 4 cut(s) | 589, 767, 787, 854 |
| Hpy99I | CGWCG | 3 cut(s) | 77, 192, 365 |
| HpyAV | CCTTC | 2 cut(s) | 301, 364 |
| HpyCH4III | ACNGT | 1 cut(s) | 694 |
| HpyCH4IV | ACGT | 5 cut(s) | 75, 634, 652, 763, 798 |
| HpyCH4V | TGCA | 5 cut(s) | 167, 239, 539, 767, 866 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 128, 265, 559, 717, 911 |
| HpySE526I | ACGT | 5 cut(s) | 75, 634, 652, 763, 798 |
| Hsp92I | GRCGYC | 1 cut(s) | 190 |
| Hsp92II | CATG | 3 cut(s) | 167, 587, 682 |
| HspAI | GCGC | 3 cut(s) | 257, 268, 553 |
| KpnI | GGTACC | 1 cut(s) | 568 |
| Kzo9I | GATC | 2 cut(s) | 815, 823 |
| LguI | GCTCTTC | 3 cut(s) | 258, 321, 969 |
| LmnI | GCTCC | 3 cut(s) | 559, 623, 895 |
| LpnPI | CCDG | 6 cut(s) | 30, 104, 117, 131, 393, 612 |
| Lsp1109I | GCAGC | 3 cut(s) | 377, 744, 850 |
| LweI | GCATC | 3 cut(s) | 174, 226, 976 |
| MaeI | CTAG | 4 cut(s) | 15, 260, 747, 860 |
| MaeII | ACGT | 5 cut(s) | 75, 634, 652, 763, 798 |
| MaeIII | GTNAC | 1 cut(s) | 686 |
| MalI | GATC | 2 cut(s) | 817, 825 |
| MbiI | CCGCTC | 1 cut(s) | 562 |
| MboI | GATC | 2 cut(s) | 815, 823 |
| MboII | GAAGA | 8 cut(s) | 79, 275, 338, 352, 672, 932, 944, 986 |
| MhlI | GDGCHC | 2 cut(s) | 769, 981 |
| MlsI | TGGCCA | 1 cut(s) | 227 |
| MluCI | AATT | 6 cut(s) | 333, 369, 484, 490, 529, 643 |
| MluNI | TGGCCA | 1 cut(s) | 227 |
| MlyI | GAGTC | 3 cut(s) | 12, 32, 337 |
| MmeI | TCCRAC | 2 cut(s) | 44, 169 |
| MnlI | CCTC | 6 cut(s) | 302, 305, 517, 698, 780, 976 |
| Mox20I | TGGCCA | 1 cut(s) | 227 |
| MscI | TGGCCA | 1 cut(s) | 227 |
| MseI | TTAA | 2 cut(s) | 834, 1003 |
| MslI | CAYNNNNRTG | 3 cut(s) | 182, 810, 984 |
| Msp20I | TGGCCA | 1 cut(s) | 227 |
| MspR9I | CCNGG | 1 cut(s) | 119 |
| Mva1269I | GAATGC | 1 cut(s) | 516 |
| MvaI | CCWGG | 1 cut(s) | 119 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 128, 265, 559, 717, 911 |
| NcoI | CCATGG | 1 cut(s) | 678 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 2 cut(s) | 815, 823 |
| NlaIII | CATG | 3 cut(s) | 167, 587, 682 |
| NlaIV | GGNNCC | 3 cut(s) | 123, 245, 566 |
| NspI | RCATGY | 2 cut(s) | 167, 587 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PceI | AGGCCT | 1 cut(s) | 135 |
| PciSI | GCTCTTC | 3 cut(s) | 258, 321, 969 |
| PctI | GAATGC | 1 cut(s) | 516 |
| PfeI | GAWTC | 1 cut(s) | 287 |
| PkrI | GCNGC | 5 cut(s) | 367, 614, 734, 865, 991 |
| PleI | GAGTC | 3 cut(s) | 12, 32, 337 |
| PmaCI | CACGTG | 2 cut(s) | 635, 653 |
| PmlI | CACGTG | 2 cut(s) | 635, 653 |
| PpsI | GAGTC | 3 cut(s) | 12, 32, 337 |
| Ppu21I | YACGTR | 2 cut(s) | 635, 653 |
| PpuMI | RGGWCCY | 1 cut(s) | 244 |
| PshAI | GACNNNNGTC | 1 cut(s) | 801 |
| PsiI | TTATAA | 2 cut(s) | 489, 534 |
| Psp5II | RGGWCCY | 1 cut(s) | 244 |
| Psp6I | CCWGG | 1 cut(s) | 117 |
| PspCI | CACGTG | 2 cut(s) | 635, 653 |
| PspGI | CCWGG | 1 cut(s) | 117 |
| PspN4I | GGNNCC | 3 cut(s) | 123, 245, 566 |
| PspPI | GGNCC | 5 cut(s) | 244, 310, 498, 682, 697 |
| PspPPI | RGGWCCY | 1 cut(s) | 244 |
| RsaI | GTAC | 3 cut(s) | 566, 853, 881 |
| RsaNI | GTAC | 3 cut(s) | 565, 852, 880 |
| RseI | CAYNNNNRTG | 3 cut(s) | 182, 810, 984 |
| SapI | GCTCTTC | 3 cut(s) | 258, 321, 969 |
| SaqAI | TTAA | 2 cut(s) | 834, 1003 |
| SatI | GCNGC | 5 cut(s) | 366, 613, 733, 864, 990 |
| Sau3AI | GATC | 2 cut(s) | 815, 823 |
| Sau96I | GGNCC | 5 cut(s) | 244, 310, 498, 682, 697 |
| SchI | GAGTC | 3 cut(s) | 12, 32, 337 |
| ScrFI | CCNGG | 1 cut(s) | 119 |
| SduI | GDGCHC | 2 cut(s) | 769, 981 |
| SfaNI | GCATC | 3 cut(s) | 174, 226, 976 |
| SinI | GGWCC | 2 cut(s) | 244, 310 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 182, 810, 984 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 6 cut(s) | 333, 369, 484, 490, 529, 643 |
| SseBI | AGGCCT | 1 cut(s) | 135 |
| SsiI | CCGC | 5 cut(s) | 129, 562, 613, 743, 990 |
| SspI | AATATT | 1 cut(s) | 442 |
| SspMI | CTAG | 4 cut(s) | 15, 260, 747, 860 |
| StuI | AGGCCT | 1 cut(s) | 135 |
| StyD4I | CCNGG | 1 cut(s) | 117 |
| StyI | CCWWGG | 2 cut(s) | 678, 746 |
| TaaI | ACNGT | 1 cut(s) | 694 |
| TaiI | ACGT | 5 cut(s) | 78, 637, 655, 766, 801 |
| TaqI | TCGA | 3 cut(s) | 5, 21, 822 |
| TaqII | GACCGA | 1 cut(s) | 86 |
| TasI | AATT | 6 cut(s) | 333, 369, 484, 490, 529, 643 |
| TatI | WGTACW | 1 cut(s) | 851 |
| TauI | GCSGC | 2 cut(s) | 615, 992 |
| TfiI | GAWTC | 1 cut(s) | 287 |
| Tru1I | TTAA | 2 cut(s) | 834, 1003 |
| Tru9I | TTAA | 2 cut(s) | 834, 1003 |
| TseI | GCWGC | 3 cut(s) | 365, 732, 863 |
| TspDTI | ATGAA | 3 cut(s) | 24, 411, 987 |
| VneI | GTGCAC | 1 cut(s) | 765 |
| VpaK11BI | GGWCC | 2 cut(s) | 244, 310 |
| XceI | RCATGY | 2 cut(s) | 167, 587 |
| XmaJI | CCTAGG | 1 cut(s) | 746 |
| XmiI | GTMKAC | 1 cut(s) | 588 |
| XspI | CTAG | 4 cut(s) | 15, 260, 747, 860 |