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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 684 |
| AccBSI | CCGCTC | 1 cut(s) | 241 |
| AccII | CGCG | 1 cut(s) | 669 |
| AciI | CCGC | 2 cut(s) | 239, 361 |
| AclWI | GGATC | 3 cut(s) | 230, 263, 621 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AcyI | GRCGYC | 1 cut(s) | 685 |
| AfaI | GTAC | 2 cut(s) | 248, 481 |
| AgsI | TTSAA | 2 cut(s) | 376, 587 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 284 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 605, 637 |
| AluBI | AGCT | 4 cut(s) | 155, 161, 562, 572 |
| AluI | AGCT | 4 cut(s) | 155, 161, 562, 572 |
| Alw21I | GWGCWC | 1 cut(s) | 564 |
| Alw26I | GTCTC | 3 cut(s) | 116, 292, 496 |
| AlwI | GGATC | 3 cut(s) | 230, 263, 621 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| AspLEI | GCGC | 2 cut(s) | 671, 687 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BanI | GGYRCC | 1 cut(s) | 684 |
| BanII | GRGCYC | 1 cut(s) | 564 |
| BbsI | GAAGAC | 3 cut(s) | 174, 283, 476 |
| Bbv12I | GWGCWC | 1 cut(s) | 564 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 3 cut(s) | 92, 215, 342 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BciVI | GTATCC | 1 cut(s) | 706 |
| BcoDI | GTCTC | 3 cut(s) | 116, 292, 496 |
| BfaI | CTAG | 3 cut(s) | 107, 126, 338 |
| BfmI | CTRYAG | 1 cut(s) | 534 |
| BfoI | RGCGCY | 1 cut(s) | 688 |
| BfuI | GTATCC | 1 cut(s) | 706 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 284 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmiI | GGNNCC | 1 cut(s) | 686 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 3 cut(s) | 174, 283, 476 |
| BpmI | CTGGAG | 2 cut(s) | 65, 227 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| BsaHI | GRCGYC | 1 cut(s) | 685 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 1 cut(s) | 630 |
| Bse1I | ACTGG | 2 cut(s) | 49, 244 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseDI | CCNNGG | 1 cut(s) | 630 |
| BseGI | GGATG | 3 cut(s) | 210, 312, 600 |
| BseNI | ACTGG | 2 cut(s) | 49, 244 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| Bsh1236I | CGCG | 1 cut(s) | 669 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BshNI | GGYRCC | 1 cut(s) | 684 |
| BsiHKAI | GWGCWC | 1 cut(s) | 564 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsmAI | GTCTC | 3 cut(s) | 116, 292, 496 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| BsnI | GGCC | 1 cut(s) | 95 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 1 cut(s) | 564 |
| Bsp143I | GATC | 4 cut(s) | 235, 268, 444, 626 |
| BspACI | CCGC | 2 cut(s) | 239, 361 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspFNI | CGCG | 1 cut(s) | 669 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 1 cut(s) | 686 |
| BspPI | GGATC | 3 cut(s) | 230, 263, 621 |
| BspT107I | GGYRCC | 1 cut(s) | 684 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrBI | CCGCTC | 1 cut(s) | 241 |
| BsrI | ACTGG | 2 cut(s) | 49, 244 |
| BssECI | CCNNGG | 1 cut(s) | 630 |
| BssMI | GATC | 4 cut(s) | 235, 268, 444, 626 |
| BssNI | GRCGYC | 1 cut(s) | 685 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 2 cut(s) | 145, 282 |
| BstACI | GRCGYC | 1 cut(s) | 685 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 3 cut(s) | 184, 510, 707 |
| BstDSI | CCRYGG | 1 cut(s) | 630 |
| BstEII | GGTNACC | 1 cut(s) | 758 |
| BstF5I | GGATG | 3 cut(s) | 210, 312, 600 |
| BstFNI | CGCG | 1 cut(s) | 669 |
| BstH2I | RGCGCY | 1 cut(s) | 688 |
| BstHHI | GCGC | 2 cut(s) | 671, 687 |
| BstKTI | GATC | 4 cut(s) | 238, 271, 447, 629 |
| BstMAI | GTCTC | 3 cut(s) | 116, 292, 496 |
| BstMBI | GATC | 4 cut(s) | 235, 268, 444, 626 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 188, 197, 691 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstNSI | RCATGY | 1 cut(s) | 139 |
| BstPI | GGTNACC | 1 cut(s) | 758 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSFI | CTRYAG | 1 cut(s) | 534 |
| BstUI | CGCG | 1 cut(s) | 669 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 3 cut(s) | 174, 283, 476 |
| BstX2I | RGATCY | 2 cut(s) | 268, 626 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 631 |
| BstYI | RGATCY | 2 cut(s) | 268, 626 |
| BsuI | GTATCC | 1 cut(s) | 706 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtgI | CCRYGG | 1 cut(s) | 630 |
| BtsCI | GGATG | 3 cut(s) | 210, 312, 600 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 1 cut(s) | 556 |
| CfoI | GCGC | 2 cut(s) | 671, 687 |
| Csp6I | GTAC | 2 cut(s) | 247, 480 |
| CviAII | CATG | 4 cut(s) | 136, 317, 557, 593 |
| CviJI | RGCY | 9 cut(s) | 48, 95, 129, 155, 161, 182, 357, 562, 572 |
| CviKI_1 | RGCY | 9 cut(s) | 48, 95, 129, 155, 161, 182, 357, 562, 572 |
| CviQI | GTAC | 2 cut(s) | 247, 480 |
| DdeI | CTNAG | 3 cut(s) | 184, 510, 707 |
| DinI | GGCGCC | 1 cut(s) | 686 |
| DpnI | GATC | 4 cut(s) | 237, 270, 446, 628 |
| DpnII | GATC | 4 cut(s) | 235, 268, 444, 626 |
| DriI | GACNNNNNGTC | 1 cut(s) | 284 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 284 |
| Ecl136II | GAGCTC | 1 cut(s) | 562 |
| Eco24I | GRGCYC | 1 cut(s) | 564 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco53kI | GAGCTC | 1 cut(s) | 562 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| Eco91I | GGTNACC | 1 cut(s) | 758 |
| EcoICRI | GAGCTC | 1 cut(s) | 562 |
| EcoO65I | GGTNACC | 1 cut(s) | 758 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT38I | GRGCYC | 1 cut(s) | 564 |
| EgeI | GGCGCC | 1 cut(s) | 686 |
| EheI | GGCGCC | 1 cut(s) | 686 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaeI | CATG | 4 cut(s) | 139, 320, 560, 596 |
| FatI | CATG | 4 cut(s) | 135, 316, 556, 592 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 3 cut(s) | 197, 299, 587 |
| FriOI | GRGCYC | 1 cut(s) | 564 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 3 cut(s) | 107, 126, 338 |
| GlaI | GCGC | 2 cut(s) | 670, 686 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 2 cut(s) | 65, 227 |
| HaeII | RGCGCY | 1 cut(s) | 688 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HhaI | GCGC | 2 cut(s) | 671, 687 |
| Hin1I | GRCGYC | 1 cut(s) | 685 |
| Hin1II | CATG | 4 cut(s) | 139, 320, 560, 596 |
| Hin6I | GCGC | 2 cut(s) | 669, 685 |
| HinP1I | GCGC | 2 cut(s) | 669, 685 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 6 cut(s) | 102, 115, 320, 472, 543, 653 |
| Hpy188I | TCNGA | 1 cut(s) | 400 |
| Hpy188III | TCNNGA | 9 cut(s) | 51, 119, 121, 332, 386, 557, 624, 650, 720 |
| HpyAV | CCTTC | 2 cut(s) | 493, 749 |
| HpyCH4III | ACNGT | 2 cut(s) | 145, 282 |
| HpyCH4IV | ACGT | 1 cut(s) | 724 |
| HpyCH4V | TGCA | 2 cut(s) | 411, 497 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 188, 197, 691 |
| HpyF3I | CTNAG | 3 cut(s) | 184, 510, 707 |
| HpySE526I | ACGT | 1 cut(s) | 724 |
| Hsp92I | GRCGYC | 1 cut(s) | 685 |
| Hsp92II | CATG | 4 cut(s) | 139, 320, 560, 596 |
| HspAI | GCGC | 2 cut(s) | 669, 685 |
| KasI | GGCGCC | 1 cut(s) | 684 |
| Kzo9I | GATC | 4 cut(s) | 235, 268, 444, 626 |
| LmnI | GCTCC | 3 cut(s) | 34, 246, 569 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 3 cut(s) | 107, 126, 338 |
| MaeII | ACGT | 1 cut(s) | 724 |
| MaeIII | GTNAC | 4 cut(s) | 5, 529, 544, 758 |
| MalI | GATC | 4 cut(s) | 237, 270, 446, 628 |
| MbiI | CCGCTC | 1 cut(s) | 241 |
| MboI | GATC | 4 cut(s) | 235, 268, 444, 626 |
| MboII | GAAGA | 7 cut(s) | 179, 275, 278, 288, 308, 481, 622 |
| MflI | RGATCY | 2 cut(s) | 268, 626 |
| MhlI | GDGCHC | 1 cut(s) | 564 |
| MluCI | AATT | 6 cut(s) | 17, 428, 522, 619, 658, 739 |
| Mly113I | GGCGCC | 1 cut(s) | 685 |
| MlyI | GAGTC | 3 cut(s) | 314, 466, 552 |
| MnlI | CCTC | 3 cut(s) | 89, 181, 368 |
| MseI | TTAA | 4 cut(s) | 414, 422, 675, 702 |
| MslI | CAYNNNNRTG | 2 cut(s) | 231, 605 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MvnI | CGCG | 1 cut(s) | 669 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 188, 197, 691 |
| NarI | GGCGCC | 1 cut(s) | 685 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 4 cut(s) | 235, 268, 444, 626 |
| NlaIII | CATG | 4 cut(s) | 139, 320, 560, 596 |
| NlaIV | GGNNCC | 1 cut(s) | 686 |
| NmuCI | GTSAC | 1 cut(s) | 544 |
| NspI | RCATGY | 1 cut(s) | 139 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PfeI | GAWTC | 3 cut(s) | 102, 115, 653 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 3 cut(s) | 314, 466, 551 |
| PluTI | GGCGCC | 1 cut(s) | 688 |
| PpsI | GAGTC | 3 cut(s) | 314, 466, 551 |
| Psp124BI | GAGCTC | 1 cut(s) | 564 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspEI | GGTNACC | 1 cut(s) | 758 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 1 cut(s) | 686 |
| PsuI | RGATCY | 2 cut(s) | 268, 626 |
| RsaI | GTAC | 2 cut(s) | 248, 481 |
| RsaNI | GTAC | 2 cut(s) | 247, 480 |
| RseI | CAYNNNNRTG | 2 cut(s) | 231, 605 |
| SacI | GAGCTC | 1 cut(s) | 564 |
| SaqAI | TTAA | 4 cut(s) | 414, 422, 675, 702 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 4 cut(s) | 235, 268, 444, 626 |
| SchI | GAGTC | 3 cut(s) | 314, 466, 552 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 1 cut(s) | 564 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| SfcI | CTRYAG | 1 cut(s) | 534 |
| SfoI | GGCGCC | 1 cut(s) | 686 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 231, 605 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 6 cut(s) | 17, 428, 522, 619, 658, 739 |
| SsiI | CCGC | 2 cut(s) | 239, 361 |
| SspDI | GGCGCC | 1 cut(s) | 684 |
| SspMI | CTAG | 3 cut(s) | 107, 126, 338 |
| SstI | GAGCTC | 1 cut(s) | 564 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 2 cut(s) | 145, 282 |
| TaiI | ACGT | 1 cut(s) | 727 |
| TaqI | TCGA | 3 cut(s) | 120, 294, 520 |
| TasI | AATT | 6 cut(s) | 17, 428, 522, 619, 658, 739 |
| TfiI | GAWTC | 3 cut(s) | 102, 115, 653 |
| Tru1I | TTAA | 4 cut(s) | 414, 422, 675, 702 |
| Tru9I | TTAA | 4 cut(s) | 414, 422, 675, 702 |
| TseFI | GTSAC | 1 cut(s) | 544 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 544 |
| TspDTI | ATGAA | 6 cut(s) | 245, 272, 276, 545, 590, 723 |
| TspGWI | ACGGA | 1 cut(s) | 619 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XceI | RCATGY | 1 cut(s) | 139 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XspI | CTAG | 3 cut(s) | 107, 126, 338 |