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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 79 |
| AcsI | RAATTY | 2 cut(s) | 17, 380 |
| AfaI | GTAC | 1 cut(s) | 200 |
| AgsI | TTSAA | 1 cut(s) | 328 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 2 cut(s) | 105, 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 240, 272 |
| AluBI | AGCT | 2 cut(s) | 155, 161 |
| AluI | AGCT | 2 cut(s) | 155, 161 |
| Alw26I | GTCTC | 1 cut(s) | 448 |
| Ama87I | CYCGRG | 1 cut(s) | 156 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 2 cut(s) | 17, 380 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 357 |
| AspS9I | GGNCC | 1 cut(s) | 238 |
| AsuHPI | GGTGA | 1 cut(s) | 424 |
| AvaI | CYCGRG | 1 cut(s) | 156 |
| AvaII | GGWCC | 1 cut(s) | 238 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 94, 126 |
| BbsI | GAAGAC | 1 cut(s) | 225 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 4 cut(s) | 92, 294, 403, 448 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 293, 327 |
| BciT130I | CCWGG | 2 cut(s) | 107, 131 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BcoDI | GTCTC | 1 cut(s) | 448 |
| BfaI | CTAG | 3 cut(s) | 51, 126, 290 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 2 cut(s) | 107, 131 |
| Bme18I | GGWCC | 1 cut(s) | 238 |
| BmeT110I | CYCGRG | 1 cut(s) | 156 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 238 |
| BmiI | GGNNCC | 2 cut(s) | 239, 240 |
| BmrFI | CCNGG | 2 cut(s) | 107, 131 |
| BmsI | GCATC | 2 cut(s) | 94, 270 |
| BpiI | GAAGAC | 1 cut(s) | 225 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 104 |
| BseBI | CCWGG | 2 cut(s) | 107, 131 |
| BseGI | GGATG | 1 cut(s) | 237 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BsiHKCI | CYCGRG | 1 cut(s) | 156 |
| BslFI | GGGAC | 1 cut(s) | 224 |
| BsmAI | GTCTC | 1 cut(s) | 448 |
| BsmBI | CGTCTC | 1 cut(s) | 448 |
| BsmFI | GGGAC | 1 cut(s) | 224 |
| BsnI | GGCC | 1 cut(s) | 95 |
| BsoBI | CYCGRG | 1 cut(s) | 156 |
| BspACI | CCGC | 1 cut(s) | 79 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspLI | GGNNCC | 2 cut(s) | 239, 240 |
| Bst2UI | CCWGG | 2 cut(s) | 107, 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 2 cut(s) | 184, 462 |
| BstF5I | GGATG | 1 cut(s) | 237 |
| BstMAI | GTCTC | 1 cut(s) | 448 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 188 |
| BstNI | CCWGG | 2 cut(s) | 107, 131 |
| BstSCI | CCNGG | 2 cut(s) | 105, 129 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 1 cut(s) | 225 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtgZI | GCGATG | 1 cut(s) | 422 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 1 cut(s) | 237 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| Cfr13I | GGNCC | 1 cut(s) | 238 |
| Csp6I | GTAC | 1 cut(s) | 199 |
| CviJI | RGCY | 8 cut(s) | 95, 105, 124, 129, 155, 161, 182, 309 |
| CviKI_1 | RGCY | 8 cut(s) | 95, 105, 124, 129, 155, 161, 182, 309 |
| CviQI | GTAC | 1 cut(s) | 199 |
| DdeI | CTNAG | 2 cut(s) | 184, 462 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco47I | GGWCC | 1 cut(s) | 238 |
| Eco88I | CYCGRG | 1 cut(s) | 156 |
| EcoO109I | RGGNCCY | 1 cut(s) | 238 |
| EcoRII | CCWGG | 2 cut(s) | 105, 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| Esp3I | CGTCTC | 1 cut(s) | 448 |
| FaiI | YATR | 3 cut(s) | 209, 306, 319 |
| FaqI | GGGAC | 1 cut(s) | 224 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 1 cut(s) | 244 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 3 cut(s) | 51, 126, 290 |
| GluI | GCNGC | 1 cut(s) | 180 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HinfI | GANTC | 3 cut(s) | 115, 272, 424 |
| HphI | GGTGA | 1 cut(s) | 424 |
| Hpy188I | TCNGA | 1 cut(s) | 352 |
| Hpy188III | TCNNGA | 4 cut(s) | 51, 71, 284, 338 |
| HpyAV | CCTTC | 3 cut(s) | 222, 320, 445 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyCH4V | TGCA | 1 cut(s) | 449 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 188 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 462 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| KflI | GGGWCCC | 1 cut(s) | 238 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 2 cut(s) | 94, 270 |
| MaeI | CTAG | 3 cut(s) | 51, 126, 290 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MaeIII | GTNAC | 2 cut(s) | 5, 269 |
| MboII | GAAGA | 4 cut(s) | 227, 230, 260, 433 |
| MluCI | AATT | 2 cut(s) | 17, 380 |
| MlyI | GAGTC | 1 cut(s) | 266 |
| MnlI | CCTC | 1 cut(s) | 181 |
| MroXI | GAANNNNTTC | 1 cut(s) | 357 |
| MseI | TTAA | 2 cut(s) | 366, 374 |
| MspR9I | CCNGG | 2 cut(s) | 107, 131 |
| MvaI | CCWGG | 2 cut(s) | 107, 131 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 188 |
| NlaIV | GGNNCC | 2 cut(s) | 239, 240 |
| NmuCI | GTSAC | 1 cut(s) | 269 |
| PaeR7I | CTCGAG | 1 cut(s) | 156 |
| PdmI | GAANNNNTTC | 1 cut(s) | 357 |
| PfeI | GAWTC | 2 cut(s) | 115, 424 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 1 cut(s) | 266 |
| PpsI | GAGTC | 1 cut(s) | 266 |
| PpuMI | RGGWCCY | 1 cut(s) | 238 |
| Psp5II | RGGWCCY | 1 cut(s) | 238 |
| Psp6I | CCWGG | 2 cut(s) | 105, 129 |
| PspGI | CCWGG | 2 cut(s) | 105, 129 |
| PspN4I | GGNNCC | 2 cut(s) | 239, 240 |
| PspPI | GGNCC | 1 cut(s) | 238 |
| PspPPI | RGGWCCY | 1 cut(s) | 238 |
| PspXI | VCTCGAGB | 1 cut(s) | 156 |
| RsaI | GTAC | 1 cut(s) | 200 |
| RsaNI | GTAC | 1 cut(s) | 199 |
| SaqAI | TTAA | 2 cut(s) | 366, 374 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau96I | GGNCC | 1 cut(s) | 238 |
| SchI | GAGTC | 1 cut(s) | 266 |
| ScrFI | CCNGG | 2 cut(s) | 107, 131 |
| SetI | ASST | 7 cut(s) | 12, 65, 138, 157, 163, 291, 437 |
| SfaNI | GCATC | 2 cut(s) | 94, 270 |
| Sfr274I | CTCGAG | 1 cut(s) | 156 |
| SinI | GGWCC | 1 cut(s) | 238 |
| SlaI | CTCGAG | 1 cut(s) | 156 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 2 cut(s) | 17, 380 |
| SsiI | CCGC | 1 cut(s) | 79 |
| SspMI | CTAG | 3 cut(s) | 51, 126, 290 |
| StyD4I | CCNGG | 2 cut(s) | 105, 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TaqI | TCGA | 2 cut(s) | 157, 246 |
| TasI | AATT | 2 cut(s) | 17, 380 |
| TfiI | GAWTC | 2 cut(s) | 115, 424 |
| Tru1I | TTAA | 2 cut(s) | 366, 374 |
| Tru9I | TTAA | 2 cut(s) | 366, 374 |
| TseFI | GTSAC | 1 cut(s) | 269 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 269 |
| TspDTI | ATGAA | 3 cut(s) | 21, 224, 228 |
| VpaK11BI | GGWCC | 1 cut(s) | 238 |
| XapI | RAATTY | 2 cut(s) | 17, 380 |
| XbaI | TCTAGA | 1 cut(s) | 50 |
| XhoI | CTCGAG | 1 cut(s) | 156 |
| XmnI | GAANNNNTTC | 1 cut(s) | 357 |
| XspI | CTAG | 3 cut(s) | 51, 126, 290 |