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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 699 |
| AccII | CGCG | 1 cut(s) | 684 |
| AciI | CCGC | 3 cut(s) | 10, 37, 376 |
| AclWI | GGATC | 2 cut(s) | 566, 636 |
| AcsI | RAATTY | 1 cut(s) | 443 |
| AfaI | GTAC | 1 cut(s) | 263 |
| AjiI | CACGTC | 3 cut(s) | 16, 43, 151 |
| AjnI | CCWGG | 1 cut(s) | 50 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 303, 335 |
| AluBI | AGCT | 4 cut(s) | 48, 170, 577, 587 |
| AluI | AGCT | 4 cut(s) | 48, 170, 577, 587 |
| Alw21I | GWGCWC | 1 cut(s) | 579 |
| Alw26I | GTCTC | 2 cut(s) | 307, 511 |
| AlwI | GGATC | 2 cut(s) | 566, 636 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 51 |
| Ama87I | CYCGRG | 1 cut(s) | 134 |
| AoxI | GGCC | 2 cut(s) | 108, 708 |
| ApeKI | GCWGC | 1 cut(s) | 194 |
| ApoI | RAATTY | 1 cut(s) | 443 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 602, 634 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 420 |
| AspLEI | GCGC | 1 cut(s) | 686 |
| AspS9I | GGNCC | 1 cut(s) | 30 |
| AvaI | CYCGRG | 1 cut(s) | 134 |
| AvaII | GGWCC | 1 cut(s) | 30 |
| BanI | GGYRCC | 1 cut(s) | 699 |
| BanII | GRGCYC | 1 cut(s) | 579 |
| BbsI | GAAGAC | 2 cut(s) | 288, 491 |
| Bbv12I | GWGCWC | 1 cut(s) | 579 |
| BbvI | GCAGC | 1 cut(s) | 206 |
| BccI | CCATC | 6 cut(s) | 105, 107, 230, 357, 511, 549 |
| BciT130I | CCWGG | 1 cut(s) | 52 |
| BcoDI | GTCTC | 2 cut(s) | 307, 511 |
| BfaI | CTAG | 3 cut(s) | 122, 141, 353 |
| BfmI | CTRYAG | 1 cut(s) | 549 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 203 |
| BisI | GCNGC | 2 cut(s) | 10, 195 |
| BlsI | GCNGC | 2 cut(s) | 11, 196 |
| Bme1390I | CCNGG | 1 cut(s) | 52 |
| Bme18I | GGWCC | 1 cut(s) | 30 |
| BmeT110I | CYCGRG | 1 cut(s) | 134 |
| BmgBI | CACGTC | 3 cut(s) | 16, 43, 151 |
| BmgT120I | GGNCC | 1 cut(s) | 30 |
| BmiI | GGNNCC | 3 cut(s) | 31, 32, 701 |
| BmrFI | CCNGG | 1 cut(s) | 52 |
| BmsI | GCATC | 2 cut(s) | 30, 457 |
| BpiI | GAAGAC | 2 cut(s) | 288, 491 |
| BpmI | CTGGAG | 1 cut(s) | 242 |
| BpuEI | CTTGAG | 2 cut(s) | 89, 156 |
| BsaI | GGTCTC | 1 cut(s) | 307 |
| BsaWI | WCCGGW | 1 cut(s) | 75 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 32, 62 |
| Bse1I | ACTGG | 1 cut(s) | 259 |
| BseBI | CCWGG | 1 cut(s) | 52 |
| BseGI | GGATG | 4 cut(s) | 225, 253, 327, 560 |
| BseNI | ACTGG | 1 cut(s) | 259 |
| BseXI | GCAGC | 1 cut(s) | 206 |
| Bsh1236I | CGCG | 1 cut(s) | 684 |
| BshFI | GGCC | 2 cut(s) | 110, 710 |
| BshNI | GGYRCC | 1 cut(s) | 699 |
| BsiHKAI | GWGCWC | 1 cut(s) | 579 |
| BsiHKCI | CYCGRG | 1 cut(s) | 134 |
| BsiSI | CCGG | 1 cut(s) | 76 |
| BslFI | GGGAC | 1 cut(s) | 43 |
| BsmAI | GTCTC | 2 cut(s) | 307, 511 |
| BsmBI | CGTCTC | 1 cut(s) | 511 |
| BsmFI | GGGAC | 1 cut(s) | 43 |
| BsnI | GGCC | 2 cut(s) | 110, 710 |
| Bso31I | GGTCTC | 1 cut(s) | 307 |
| BsoBI | CYCGRG | 1 cut(s) | 134 |
| Bsp1286I | GDGCHC | 1 cut(s) | 579 |
| Bsp143I | GATC | 3 cut(s) | 459, 558, 641 |
| BspACI | CCGC | 3 cut(s) | 10, 37, 376 |
| BspANI | GGCC | 2 cut(s) | 110, 710 |
| BspFNI | CGCG | 1 cut(s) | 684 |
| BspHI | TCATGA | 1 cut(s) | 571 |
| BspLI | GGNNCC | 3 cut(s) | 31, 32, 701 |
| BspMAI | CTGCAG | 1 cut(s) | 553 |
| BspPI | GGATC | 2 cut(s) | 566, 636 |
| BspT107I | GGYRCC | 1 cut(s) | 699 |
| BspTNI | GGTCTC | 1 cut(s) | 307 |
| BsrI | ACTGG | 1 cut(s) | 259 |
| BssMI | GATC | 3 cut(s) | 459, 558, 641 |
| Bst2UI | CCWGG | 1 cut(s) | 52 |
| BstC8I | GCNNGC | 1 cut(s) | 168 |
| BstDEI | CTNAG | 3 cut(s) | 199, 525, 690 |
| BstF5I | GGATG | 4 cut(s) | 225, 253, 327, 560 |
| BstFNI | CGCG | 1 cut(s) | 684 |
| BstHHI | GCGC | 1 cut(s) | 686 |
| BstKTI | GATC | 3 cut(s) | 462, 561, 644 |
| BstMAI | GTCTC | 2 cut(s) | 307, 511 |
| BstMBI | GATC | 3 cut(s) | 459, 558, 641 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 18, 45, 191, 203, 212 |
| BstNI | CCWGG | 1 cut(s) | 52 |
| BstSCI | CCNGG | 1 cut(s) | 50 |
| BstSFI | CTRYAG | 1 cut(s) | 549 |
| BstUI | CGCG | 1 cut(s) | 684 |
| BstV1I | GCAGC | 1 cut(s) | 206 |
| BstV2I | GAAGAC | 2 cut(s) | 288, 491 |
| BstX2I | RGATCY | 1 cut(s) | 641 |
| BstYI | RGATCY | 1 cut(s) | 641 |
| BsuRI | GGCC | 2 cut(s) | 110, 710 |
| BtgZI | GCGATG | 1 cut(s) | 485 |
| BtrI | CACGTC | 3 cut(s) | 16, 43, 151 |
| BtsCI | GGATG | 4 cut(s) | 225, 253, 327, 560 |
| Cac8I | GCNNGC | 1 cut(s) | 168 |
| CaiI | CAGNNNCTG | 1 cut(s) | 51 |
| CciI | TCATGA | 1 cut(s) | 571 |
| CfoI | GCGC | 1 cut(s) | 686 |
| Cfr13I | GGNCC | 1 cut(s) | 30 |
| Csp6I | GTAC | 1 cut(s) | 262 |
| CviAII | CATG | 5 cut(s) | 146, 306, 332, 572, 608 |
| CviQI | GTAC | 1 cut(s) | 262 |
| DdeI | CTNAG | 3 cut(s) | 199, 525, 690 |
| DpnI | GATC | 3 cut(s) | 461, 560, 643 |
| DpnII | GATC | 3 cut(s) | 459, 558, 641 |
| Ecl136II | GAGCTC | 1 cut(s) | 577 |
| Eco147I | AGGCCT | 1 cut(s) | 710 |
| Eco24I | GRGCYC | 1 cut(s) | 579 |
| Eco31I | GGTCTC | 1 cut(s) | 307 |
| Eco47I | GGWCC | 1 cut(s) | 30 |
| Eco53kI | GAGCTC | 1 cut(s) | 577 |
| Eco88I | CYCGRG | 1 cut(s) | 134 |
| EcoICRI | GAGCTC | 1 cut(s) | 577 |
| EcoO109I | RGGNCCY | 1 cut(s) | 30 |
| EcoRI | GAATTC | 1 cut(s) | 443 |
| EcoRII | CCWGG | 1 cut(s) | 50 |
| EcoT38I | GRGCYC | 1 cut(s) | 579 |
| Esp3I | CGTCTC | 1 cut(s) | 511 |
| FaeI | CATG | 5 cut(s) | 149, 309, 335, 575, 611 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 476, 508 |
| FaqI | GGGAC | 1 cut(s) | 43 |
| FatI | CATG | 5 cut(s) | 145, 305, 331, 571, 607 |
| FauNDI | CATATG | 1 cut(s) | 243 |
| Fnu4HI | GCNGC | 2 cut(s) | 10, 195 |
| FokI | GGATG | 4 cut(s) | 212, 260, 314, 567 |
| FriOI | GRGCYC | 1 cut(s) | 579 |
| Fsp4HI | GCNGC | 2 cut(s) | 10, 195 |
| FspBI | CTAG | 3 cut(s) | 122, 141, 353 |
| GlaI | GCGC | 1 cut(s) | 685 |
| GluI | GCNGC | 2 cut(s) | 10, 195 |
| GsuI | CTGGAG | 1 cut(s) | 242 |
| HaeIII | GGCC | 2 cut(s) | 110, 710 |
| HapII | CCGG | 1 cut(s) | 76 |
| HhaI | GCGC | 1 cut(s) | 686 |
| Hin1II | CATG | 5 cut(s) | 149, 309, 335, 575, 611 |
| Hin6I | GCGC | 1 cut(s) | 684 |
| HinP1I | GCGC | 1 cut(s) | 684 |
| HincII | GTYRAC | 2 cut(s) | 57, 67 |
| HindII | GTYRAC | 2 cut(s) | 57, 67 |
| HinfI | GANTC | 8 cut(s) | 72, 82, 117, 130, 251, 335, 487, 668 |
| HpaII | CCGG | 1 cut(s) | 76 |
| Hpy166II | GTNNAC | 2 cut(s) | 57, 67 |
| Hpy188I | TCNGA | 1 cut(s) | 415 |
| Hpy188III | TCNNGA | 7 cut(s) | 86, 134, 347, 401, 572, 639, 665 |
| Hpy8I | GTNNAC | 2 cut(s) | 57, 67 |
| HpyAV | CCTTC | 3 cut(s) | 285, 508, 690 |
| HpyCH4IV | ACGT | 3 cut(s) | 15, 42, 150 |
| HpyCH4V | TGCA | 1 cut(s) | 551 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 18, 45, 191, 203, 212 |
| HpyF3I | CTNAG | 3 cut(s) | 199, 525, 690 |
| HpySE526I | ACGT | 3 cut(s) | 15, 42, 150 |
| Hsp92II | CATG | 5 cut(s) | 149, 309, 335, 575, 611 |
| HspAI | GCGC | 1 cut(s) | 684 |
| KflI | GGGWCCC | 1 cut(s) | 30 |
| Kzo9I | GATC | 3 cut(s) | 459, 558, 641 |
| LmnI | GCTCC | 3 cut(s) | 53, 261, 584 |
| Lsp1109I | GCAGC | 1 cut(s) | 206 |
| LweI | GCATC | 2 cut(s) | 30, 457 |
| MaeI | CTAG | 3 cut(s) | 122, 141, 353 |
| MaeII | ACGT | 3 cut(s) | 15, 42, 150 |
| MaeIII | GTNAC | 1 cut(s) | 544 |
| MalI | GATC | 3 cut(s) | 461, 560, 643 |
| MboI | GATC | 3 cut(s) | 459, 558, 641 |
| MboII | GAAGA | 5 cut(s) | 290, 293, 323, 496, 637 |
| MflI | RGATCY | 1 cut(s) | 641 |
| MhlI | GDGCHC | 1 cut(s) | 579 |
| MluCI | AATT | 3 cut(s) | 443, 537, 634 |
| MlyI | GAGTC | 2 cut(s) | 329, 481 |
| MnlI | CCTC | 3 cut(s) | 196, 383, 700 |
| MroXI | GAANNNNTTC | 1 cut(s) | 420 |
| MseI | TTAA | 2 cut(s) | 429, 437 |
| MslI | CAYNNNNRTG | 3 cut(s) | 230, 246, 620 |
| MspI | CCGG | 1 cut(s) | 76 |
| MspR9I | CCNGG | 1 cut(s) | 52 |
| MvaI | CCWGG | 1 cut(s) | 52 |
| MvnI | CGCG | 1 cut(s) | 684 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 18, 45, 191, 203, 212 |
| NdeI | CATATG | 1 cut(s) | 243 |
| NdeII | GATC | 3 cut(s) | 459, 558, 641 |
| NlaIII | CATG | 5 cut(s) | 149, 309, 335, 575, 611 |
| NlaIV | GGNNCC | 3 cut(s) | 31, 32, 701 |
| PaeR7I | CTCGAG | 1 cut(s) | 134 |
| PagI | TCATGA | 1 cut(s) | 571 |
| PceI | AGGCCT | 1 cut(s) | 710 |
| PdmI | GAANNNNTTC | 1 cut(s) | 420 |
| PfeI | GAWTC | 6 cut(s) | 72, 82, 117, 130, 251, 668 |
| PkrI | GCNGC | 2 cut(s) | 11, 196 |
| PleI | GAGTC | 2 cut(s) | 329, 481 |
| PpsI | GAGTC | 2 cut(s) | 329, 481 |
| PpuMI | RGGWCCY | 1 cut(s) | 30 |
| Psp124BI | GAGCTC | 1 cut(s) | 579 |
| Psp5II | RGGWCCY | 1 cut(s) | 30 |
| Psp6I | CCWGG | 1 cut(s) | 50 |
| PspGI | CCWGG | 1 cut(s) | 50 |
| PspN4I | GGNNCC | 3 cut(s) | 31, 32, 701 |
| PspPI | GGNCC | 1 cut(s) | 30 |
| PspPPI | RGGWCCY | 1 cut(s) | 30 |
| PstI | CTGCAG | 1 cut(s) | 553 |
| PstNI | CAGNNNCTG | 1 cut(s) | 51 |
| PsuI | RGATCY | 1 cut(s) | 641 |
| RsaI | GTAC | 1 cut(s) | 263 |
| RsaNI | GTAC | 1 cut(s) | 262 |
| RseI | CAYNNNNRTG | 3 cut(s) | 230, 246, 620 |
| SacI | GAGCTC | 1 cut(s) | 579 |
| SaqAI | TTAA | 2 cut(s) | 429, 437 |
| SatI | GCNGC | 2 cut(s) | 10, 195 |
| Sau3AI | GATC | 3 cut(s) | 459, 558, 641 |
| Sau96I | GGNCC | 1 cut(s) | 30 |
| SchI | GAGTC | 2 cut(s) | 329, 481 |
| ScrFI | CCNGG | 1 cut(s) | 52 |
| SduI | GDGCHC | 1 cut(s) | 579 |
| SfaNI | GCATC | 2 cut(s) | 30, 457 |
| SfcI | CTRYAG | 1 cut(s) | 549 |
| Sfr274I | CTCGAG | 1 cut(s) | 134 |
| SinI | GGWCC | 1 cut(s) | 30 |
| SlaI | CTCGAG | 1 cut(s) | 134 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 230, 246, 620 |
| SmlI | CTYRAG | 3 cut(s) | 104, 134, 171 |
| SmoI | CTYRAG | 3 cut(s) | 104, 134, 171 |
| Sse9I | AATT | 3 cut(s) | 443, 537, 634 |
| SseBI | AGGCCT | 1 cut(s) | 710 |
| SsiI | CCGC | 3 cut(s) | 10, 37, 376 |
| SspMI | CTAG | 3 cut(s) | 122, 141, 353 |
| SstI | GAGCTC | 1 cut(s) | 579 |
| StuI | AGGCCT | 1 cut(s) | 710 |
| StyD4I | CCNGG | 1 cut(s) | 50 |
| TaiI | ACGT | 3 cut(s) | 18, 45, 153 |
| TaqI | TCGA | 3 cut(s) | 135, 535, 638 |
| TaqII | GACCGA | 1 cut(s) | 84 |
| TasI | AATT | 3 cut(s) | 443, 537, 634 |
| TauI | GCSGC | 1 cut(s) | 12 |
| TfiI | GAWTC | 6 cut(s) | 72, 82, 117, 130, 251, 668 |
| Tru1I | TTAA | 2 cut(s) | 429, 437 |
| Tru9I | TTAA | 2 cut(s) | 429, 437 |
| TseI | GCWGC | 1 cut(s) | 194 |
| TspDTI | ATGAA | 5 cut(s) | 230, 287, 291, 560, 605 |
| TspGWI | ACGGA | 1 cut(s) | 634 |
| VpaK11BI | GGWCC | 1 cut(s) | 30 |
| XapI | RAATTY | 1 cut(s) | 443 |
| XhoI | CTCGAG | 1 cut(s) | 134 |
| XmnI | GAANNNNTTC | 1 cut(s) | 420 |
| XspI | CTAG | 3 cut(s) | 122, 141, 353 |