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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 326 |
| AccIII | TCCGGA | 1 cut(s) | 226 |
| AciI | CCGC | 2 cut(s) | 247, 468 |
| AclWI | GGATC | 2 cut(s) | 128, 198 |
| AcoI | YGGCCR | 1 cut(s) | 313 |
| AcsI | RAATTY | 2 cut(s) | 5, 230 |
| AcyI | GRCGYC | 1 cut(s) | 327 |
| AdeI | CACNNNGTG | 1 cut(s) | 508 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 429 |
| AgsI | TTSAA | 3 cut(s) | 134, 201, 551 |
| AluBI | AGCT | 4 cut(s) | 139, 149, 449, 500 |
| AluI | AGCT | 4 cut(s) | 139, 149, 449, 500 |
| Alw21I | GWGCWC | 1 cut(s) | 451 |
| Alw26I | GTCTC | 1 cut(s) | 73 |
| AlwI | GGATC | 2 cut(s) | 128, 198 |
| Aor13HI | TCCGGA | 1 cut(s) | 226 |
| AoxI | GGCC | 1 cut(s) | 313 |
| ApoI | RAATTY | 2 cut(s) | 5, 230 |
| AspLEI | GCGC | 2 cut(s) | 329, 393 |
| AsuHPI | GGTGA | 1 cut(s) | 457 |
| AsuII | TTCGAA | 1 cut(s) | 363 |
| BaeGI | GKGCMC | 1 cut(s) | 436 |
| BalI | TGGCCA | 1 cut(s) | 315 |
| BanI | GGYRCC | 1 cut(s) | 326 |
| BanII | GRGCYC | 1 cut(s) | 451 |
| BbsI | GAAGAC | 1 cut(s) | 558 |
| Bbv12I | GWGCWC | 1 cut(s) | 451 |
| BccI | CCATC | 1 cut(s) | 73 |
| BciVI | GTATCC | 1 cut(s) | 430 |
| BcoDI | GTCTC | 1 cut(s) | 73 |
| BfaI | CTAG | 1 cut(s) | 536 |
| BfmI | CTRYAG | 1 cut(s) | 111 |
| BfoI | RGCGCY | 1 cut(s) | 330 |
| BfuI | GTATCC | 1 cut(s) | 430 |
| BmiI | GGNNCC | 2 cut(s) | 269, 328 |
| BmsI | GCATC | 1 cut(s) | 19 |
| BpiI | GAAGAC | 1 cut(s) | 558 |
| Bpu14I | TTCGAA | 1 cut(s) | 363 |
| Bsa29I | ATCGAT | 2 cut(s) | 102, 574 |
| BsaHI | GRCGYC | 1 cut(s) | 327 |
| BsaWI | WCCGGW | 1 cut(s) | 226 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 429 |
| BseAI | TCCGGA | 1 cut(s) | 226 |
| BseCI | ATCGAT | 2 cut(s) | 102, 574 |
| BseGI | GGATG | 1 cut(s) | 177 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 429 |
| BseMII | CTCAG | 1 cut(s) | 378 |
| BseSI | GKGCMC | 1 cut(s) | 436 |
| BsgI | GTGCAG | 2 cut(s) | 57, 562 |
| BshFI | GGCC | 1 cut(s) | 315 |
| BshNI | GGYRCC | 1 cut(s) | 326 |
| BshVI | ATCGAT | 2 cut(s) | 102, 574 |
| BsiHKAI | GWGCWC | 1 cut(s) | 451 |
| BsiSI | CCGG | 1 cut(s) | 227 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 429 |
| BsmAI | GTCTC | 1 cut(s) | 73 |
| BsmBI | CGTCTC | 1 cut(s) | 73 |
| BsnI | GGCC | 1 cut(s) | 315 |
| Bsp119I | TTCGAA | 1 cut(s) | 363 |
| Bsp1286I | GDGCHC | 2 cut(s) | 436, 451 |
| Bsp13I | TCCGGA | 1 cut(s) | 226 |
| Bsp143I | GATC | 7 cut(s) | 21, 120, 203, 424, 520, 532, 571 |
| BspACI | CCGC | 2 cut(s) | 247, 468 |
| BspANI | GGCC | 1 cut(s) | 315 |
| BspCNI | CTCAG | 1 cut(s) | 379 |
| BspDI | ATCGAT | 2 cut(s) | 102, 574 |
| BspEI | TCCGGA | 1 cut(s) | 226 |
| BspHI | TCATGA | 1 cut(s) | 451 |
| BspLI | GGNNCC | 2 cut(s) | 269, 328 |
| BspPI | GGATC | 2 cut(s) | 128, 198 |
| BspT104I | TTCGAA | 1 cut(s) | 363 |
| BspT107I | GGYRCC | 1 cut(s) | 326 |
| BssMI | GATC | 7 cut(s) | 21, 120, 203, 424, 520, 532, 571 |
| BssNI | GRCGYC | 1 cut(s) | 327 |
| Bst4CI | ACNGT | 1 cut(s) | 112 |
| Bst6I | CTCTTC | 1 cut(s) | 268 |
| BstACI | GRCGYC | 1 cut(s) | 327 |
| BstBI | TTCGAA | 1 cut(s) | 363 |
| BstDEI | CTNAG | 3 cut(s) | 87, 339, 387 |
| BstF5I | GGATG | 1 cut(s) | 177 |
| BstH2I | RGCGCY | 1 cut(s) | 330 |
| BstHHI | GCGC | 2 cut(s) | 329, 393 |
| BstKTI | GATC | 7 cut(s) | 24, 123, 206, 427, 523, 535, 574 |
| BstMAI | GTCTC | 1 cut(s) | 73 |
| BstMBI | GATC | 7 cut(s) | 21, 120, 203, 424, 520, 532, 571 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 476, 497 |
| BstSFI | CTRYAG | 1 cut(s) | 111 |
| BstSLI | GKGCMC | 1 cut(s) | 436 |
| BstV2I | GAAGAC | 1 cut(s) | 558 |
| BstX2I | RGATCY | 1 cut(s) | 203 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 323 |
| BstYI | RGATCY | 1 cut(s) | 203 |
| Bsu15I | ATCGAT | 2 cut(s) | 102, 574 |
| BsuI | GTATCC | 1 cut(s) | 430 |
| BsuRI | GGCC | 1 cut(s) | 315 |
| BsuTUI | ATCGAT | 2 cut(s) | 102, 574 |
| BtgZI | GCGATG | 1 cut(s) | 47 |
| BtsCI | GGATG | 1 cut(s) | 177 |
| BtsIMutI | CAGTG | 1 cut(s) | 74 |
| CciI | TCATGA | 1 cut(s) | 451 |
| CfoI | GCGC | 2 cut(s) | 329, 393 |
| ClaI | ATCGAT | 2 cut(s) | 102, 574 |
| CviAII | CATG | 3 cut(s) | 170, 317, 452 |
| CviJI | RGCY | 6 cut(s) | 139, 149, 315, 345, 449, 500 |
| CviKI_1 | RGCY | 6 cut(s) | 139, 149, 315, 345, 449, 500 |
| DdeI | CTNAG | 3 cut(s) | 87, 339, 387 |
| DinI | GGCGCC | 1 cut(s) | 328 |
| DpnI | GATC | 7 cut(s) | 23, 122, 205, 426, 522, 534, 573 |
| DpnII | GATC | 7 cut(s) | 21, 120, 203, 424, 520, 532, 571 |
| DraIII | CACNNNGTG | 1 cut(s) | 508 |
| EaeI | YGGCCR | 1 cut(s) | 313 |
| Eam1104I | CTCTTC | 1 cut(s) | 268 |
| EarI | CTCTTC | 1 cut(s) | 268 |
| Ecl136II | GAGCTC | 1 cut(s) | 449 |
| Eco24I | GRGCYC | 1 cut(s) | 451 |
| Eco53kI | GAGCTC | 1 cut(s) | 449 |
| EcoICRI | GAGCTC | 1 cut(s) | 449 |
| EcoRI | GAATTC | 1 cut(s) | 5 |
| EcoT38I | GRGCYC | 1 cut(s) | 451 |
| EgeI | GGCGCC | 1 cut(s) | 328 |
| EheI | GGCGCC | 1 cut(s) | 328 |
| Esp3I | CGTCTC | 1 cut(s) | 73 |
| FaeI | CATG | 3 cut(s) | 173, 320, 455 |
| FatI | CATG | 3 cut(s) | 169, 316, 451 |
| FokI | GGATG | 1 cut(s) | 164 |
| FriOI | GRGCYC | 1 cut(s) | 451 |
| FspBI | CTAG | 1 cut(s) | 536 |
| GlaI | GCGC | 2 cut(s) | 328, 392 |
| HaeII | RGCGCY | 1 cut(s) | 330 |
| HaeIII | GGCC | 1 cut(s) | 315 |
| HapII | CCGG | 1 cut(s) | 227 |
| HhaI | GCGC | 2 cut(s) | 329, 393 |
| Hin1I | GRCGYC | 1 cut(s) | 327 |
| Hin1II | CATG | 3 cut(s) | 173, 320, 455 |
| Hin6I | GCGC | 2 cut(s) | 327, 391 |
| HinP1I | GCGC | 2 cut(s) | 327, 391 |
| HincII | GTYRAC | 1 cut(s) | 281 |
| HindII | GTYRAC | 1 cut(s) | 281 |
| HinfI | GANTC | 1 cut(s) | 383 |
| HpaII | CCGG | 1 cut(s) | 227 |
| HphI | GGTGA | 1 cut(s) | 457 |
| Hpy166II | GTNNAC | 1 cut(s) | 281 |
| Hpy188I | TCNGA | 2 cut(s) | 388, 424 |
| Hpy188III | TCNNGA | 6 cut(s) | 134, 201, 227, 408, 452, 536 |
| Hpy8I | GTNNAC | 1 cut(s) | 281 |
| HpyAV | CCTTC | 1 cut(s) | 70 |
| HpyCH4III | ACNGT | 1 cut(s) | 112 |
| HpyCH4V | TGCA | 2 cut(s) | 74, 543 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 476, 497 |
| HpyF3I | CTNAG | 3 cut(s) | 87, 339, 387 |
| Hsp92I | GRCGYC | 1 cut(s) | 327 |
| Hsp92II | CATG | 3 cut(s) | 173, 320, 455 |
| HspAI | GCGC | 2 cut(s) | 327, 391 |
| KasI | GGCGCC | 1 cut(s) | 326 |
| Kpn2I | TCCGGA | 1 cut(s) | 226 |
| Kzo9I | GATC | 7 cut(s) | 21, 120, 203, 424, 520, 532, 571 |
| LmnI | GCTCC | 1 cut(s) | 146 |
| LpnPI | CCDG | 4 cut(s) | 240, 297, 529, 549 |
| LweI | GCATC | 1 cut(s) | 19 |
| MaeI | CTAG | 1 cut(s) | 536 |
| MaeIII | GTNAC | 3 cut(s) | 106, 242, 463 |
| MalI | GATC | 7 cut(s) | 23, 122, 205, 426, 522, 534, 573 |
| MboI | GATC | 7 cut(s) | 21, 120, 203, 424, 520, 532, 571 |
| MboII | GAAGA | 4 cut(s) | 285, 467, 530, 563 |
| MflI | RGATCY | 1 cut(s) | 203 |
| MhlI | GDGCHC | 2 cut(s) | 436, 451 |
| MlsI | TGGCCA | 1 cut(s) | 315 |
| MluCI | AATT | 5 cut(s) | 5, 196, 230, 235, 459 |
| MluNI | TGGCCA | 1 cut(s) | 315 |
| Mly113I | GGCGCC | 1 cut(s) | 327 |
| MlyI | GAGTC | 1 cut(s) | 392 |
| MnlI | CCTC | 5 cut(s) | 269, 289, 293, 319, 381 |
| Mox20I | TGGCCA | 1 cut(s) | 315 |
| MroI | TCCGGA | 1 cut(s) | 226 |
| MscI | TGGCCA | 1 cut(s) | 315 |
| MseI | TTAA | 1 cut(s) | 234 |
| MslI | CAYNNNNRTG | 2 cut(s) | 182, 321 |
| Msp20I | TGGCCA | 1 cut(s) | 315 |
| MspI | CCGG | 1 cut(s) | 227 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 476, 497 |
| NarI | GGCGCC | 1 cut(s) | 327 |
| NdeII | GATC | 7 cut(s) | 21, 120, 203, 424, 520, 532, 571 |
| NlaIII | CATG | 3 cut(s) | 173, 320, 455 |
| NlaIV | GGNNCC | 2 cut(s) | 269, 328 |
| NmuCI | GTSAC | 1 cut(s) | 463 |
| NspV | TTCGAA | 1 cut(s) | 363 |
| PagI | TCATGA | 1 cut(s) | 451 |
| PleI | GAGTC | 1 cut(s) | 391 |
| PluTI | GGCGCC | 1 cut(s) | 330 |
| PpsI | GAGTC | 1 cut(s) | 391 |
| Psp124BI | GAGCTC | 1 cut(s) | 451 |
| PspN4I | GGNNCC | 2 cut(s) | 269, 328 |
| PsuI | RGATCY | 1 cut(s) | 203 |
| RseI | CAYNNNNRTG | 2 cut(s) | 182, 321 |
| SacI | GAGCTC | 1 cut(s) | 451 |
| SaqAI | TTAA | 1 cut(s) | 234 |
| Sau3AI | GATC | 7 cut(s) | 21, 120, 203, 424, 520, 532, 571 |
| SchI | GAGTC | 1 cut(s) | 392 |
| SduI | GDGCHC | 2 cut(s) | 436, 451 |
| SetI | ASST | 8 cut(s) | 62, 131, 141, 151, 280, 351, 451, 502 |
| SfaNI | GCATC | 1 cut(s) | 19 |
| SfcI | CTRYAG | 1 cut(s) | 111 |
| SfoI | GGCGCC | 1 cut(s) | 328 |
| SfuI | TTCGAA | 1 cut(s) | 363 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 182, 321 |
| Sse9I | AATT | 5 cut(s) | 5, 196, 230, 235, 459 |
| SsiI | CCGC | 2 cut(s) | 247, 468 |
| SspDI | GGCGCC | 1 cut(s) | 326 |
| SspMI | CTAG | 1 cut(s) | 536 |
| SstI | GAGCTC | 1 cut(s) | 451 |
| TaaI | ACNGT | 1 cut(s) | 112 |
| TaqI | TCGA | 4 cut(s) | 102, 363, 409, 574 |
| TasI | AATT | 5 cut(s) | 5, 196, 230, 235, 459 |
| Tru1I | TTAA | 1 cut(s) | 234 |
| Tru9I | TTAA | 1 cut(s) | 234 |
| TscAI | CASTG | 1 cut(s) | 81 |
| TseFI | GTSAC | 1 cut(s) | 463 |
| Tsp45I | GTSAC | 1 cut(s) | 463 |
| TspDTI | ATGAA | 4 cut(s) | 28, 167, 203, 468 |
| TspGWI | ACGGA | 2 cut(s) | 133, 196 |
| TspRI | CASTG | 1 cut(s) | 81 |
| XapI | RAATTY | 2 cut(s) | 5, 230 |
| XbaI | TCTAGA | 1 cut(s) | 535 |
| XspI | CTAG | 1 cut(s) | 536 |