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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1005 |
| AccB1I | GGYRCC | 1 cut(s) | 845 |
| AccI | GTMKAC | 1 cut(s) | 746 |
| AccII | CGCG | 2 cut(s) | 605, 945 |
| AccIII | TCCGGA | 2 cut(s) | 17, 925 |
| AciI | CCGC | 4 cut(s) | 96, 213, 727, 1093 |
| AclI | AACGTT | 1 cut(s) | 678 |
| AclWI | GGATC | 2 cut(s) | 386, 399 |
| AcoI | YGGCCR | 1 cut(s) | 214 |
| AcsI | RAATTY | 1 cut(s) | 491 |
| AcyI | GRCGYC | 1 cut(s) | 846 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 24, 209, 453, 588, 628, 956, 1027 |
| AflII | CTTAAG | 2 cut(s) | 62, 478 |
| AflIII | ACRYGT | 1 cut(s) | 1075 |
| AgsI | TTSAA | 4 cut(s) | 172, 554, 742, 786 |
| AjiI | CACGTC | 2 cut(s) | 287, 304 |
| AluBI | AGCT | 8 cut(s) | 253, 367, 414, 542, 566, 646, 838, 860 |
| AluI | AGCT | 8 cut(s) | 253, 367, 414, 542, 566, 646, 838, 860 |
| Alw21I | GWGCWC | 5 cut(s) | 292, 514, 528, 840, 1057 |
| Alw26I | GTCTC | 2 cut(s) | 422, 772 |
| Alw44I | GTGCAC | 1 cut(s) | 1053 |
| AlwI | GGATC | 2 cut(s) | 386, 399 |
| Ama87I | CYCGRG | 1 cut(s) | 425 |
| Aor13HI | TCCGGA | 2 cut(s) | 17, 925 |
| AoxI | GGCC | 3 cut(s) | 214, 482, 570 |
| ApaLI | GTGCAC | 1 cut(s) | 1053 |
| ApeKI | GCWGC | 4 cut(s) | 141, 247, 250, 664 |
| ApoI | RAATTY | 1 cut(s) | 491 |
| AspLEI | GCGC | 5 cut(s) | 439, 470, 607, 848, 947 |
| AspS9I | GGNCC | 2 cut(s) | 456, 1007 |
| AsuHPI | GGTGA | 2 cut(s) | 23, 1031 |
| AvaI | CYCGRG | 1 cut(s) | 425 |
| AvaII | GGWCC | 2 cut(s) | 456, 1007 |
| AxyI | CCTNAGG | 1 cut(s) | 978 |
| BaeGI | GKGCMC | 2 cut(s) | 309, 1057 |
| BamHI | GGATCC | 1 cut(s) | 391 |
| BanI | GGYRCC | 1 cut(s) | 845 |
| BanII | GRGCYC | 1 cut(s) | 840 |
| BauI | CACGAG | 1 cut(s) | 291 |
| BbsI | GAAGAC | 1 cut(s) | 639 |
| Bbv12I | GWGCWC | 5 cut(s) | 292, 514, 528, 840, 1057 |
| BbvI | GCAGC | 4 cut(s) | 128, 259, 262, 676 |
| BccI | CCATC | 3 cut(s) | 481, 510, 708 |
| BceAI | ACGGC | 2 cut(s) | 243, 450 |
| BciVI | GTATCC | 1 cut(s) | 436 |
| BcoDI | GTCTC | 2 cut(s) | 422, 772 |
| BfaI | CTAG | 2 cut(s) | 659, 900 |
| BfmI | CTRYAG | 1 cut(s) | 937 |
| BfoI | RGCGCY | 1 cut(s) | 849 |
| BfrI | CTTAAG | 2 cut(s) | 62, 478 |
| BfuI | GTATCC | 1 cut(s) | 436 |
| BisI | GCNGC | 5 cut(s) | 142, 214, 248, 251, 665 |
| BlsI | GCNGC | 5 cut(s) | 143, 215, 249, 252, 666 |
| Bme18I | GGWCC | 2 cut(s) | 456, 1007 |
| BmeT110I | CYCGRG | 1 cut(s) | 425 |
| BmgBI | CACGTC | 2 cut(s) | 287, 304 |
| BmgT120I | GGNCC | 2 cut(s) | 456, 1007 |
| BmiI | GGNNCC | 6 cut(s) | 59, 393, 457, 847, 1061, 1097 |
| BpiI | GAAGAC | 1 cut(s) | 639 |
| BpmI | CTGGAG | 1 cut(s) | 76 |
| Bpu10I | CCTNAGC | 1 cut(s) | 567 |
| BpuEI | CTTGAG | 1 cut(s) | 430 |
| Bsa29I | ATCGAT | 1 cut(s) | 346 |
| BsaHI | GRCGYC | 1 cut(s) | 846 |
| BsaJI | CCNNGG | 2 cut(s) | 906, 1106 |
| BsaWI | WCCGGW | 2 cut(s) | 17, 925 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 288, 318 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 24, 209, 453, 588, 628, 956, 1027 |
| Bse1I | ACTGG | 1 cut(s) | 59 |
| Bse21I | CCTNAGG | 1 cut(s) | 978 |
| BseAI | TCCGGA | 2 cut(s) | 17, 925 |
| BseCI | ATCGAT | 1 cut(s) | 346 |
| BseDI | CCNNGG | 2 cut(s) | 906, 1106 |
| BseGI | GGATG | 2 cut(s) | 126, 502 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 24, 209, 453, 588, 628, 956, 1027 |
| BseNI | ACTGG | 1 cut(s) | 59 |
| BseRI | GAGGAG | 2 cut(s) | 354, 679 |
| BseSI | GKGCMC | 2 cut(s) | 309, 1057 |
| BseX3I | CGGCCG | 1 cut(s) | 214 |
| BseXI | GCAGC | 4 cut(s) | 128, 259, 262, 676 |
| Bsh1236I | CGCG | 2 cut(s) | 605, 945 |
| Bsh1285I | CGRYCG | 3 cut(s) | 217, 381, 518 |
| BshFI | GGCC | 3 cut(s) | 216, 484, 572 |
| BshNI | GGYRCC | 1 cut(s) | 845 |
| BshVI | ATCGAT | 1 cut(s) | 346 |
| BsiEI | CGRYCG | 3 cut(s) | 217, 381, 518 |
| BsiHKAI | GWGCWC | 5 cut(s) | 292, 514, 528, 840, 1057 |
| BsiHKCI | CYCGRG | 1 cut(s) | 425 |
| BsiSI | CCGG | 4 cut(s) | 18, 177, 217, 926 |
| BslFI | GGGAC | 3 cut(s) | 314, 404, 1001 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 24, 209, 453, 588, 628, 956, 1027 |
| BsmAI | GTCTC | 2 cut(s) | 422, 772 |
| BsmBI | CGTCTC | 1 cut(s) | 772 |
| BsmFI | GGGAC | 3 cut(s) | 314, 404, 1001 |
| BsnI | GGCC | 3 cut(s) | 216, 484, 572 |
| BsoBI | CYCGRG | 1 cut(s) | 425 |
| Bsp1286I | GDGCHC | 6 cut(s) | 292, 309, 514, 528, 840, 1057 |
| Bsp13I | TCCGGA | 2 cut(s) | 17, 925 |
| Bsp143I | GATC | 2 cut(s) | 343, 391 |
| Bsp19I | CCATGG | 1 cut(s) | 1106 |
| BspACI | CCGC | 4 cut(s) | 96, 213, 727, 1093 |
| BspANI | GGCC | 3 cut(s) | 216, 484, 572 |
| BspDI | ATCGAT | 1 cut(s) | 346 |
| BspEI | TCCGGA | 2 cut(s) | 17, 925 |
| BspFNI | CGCG | 2 cut(s) | 605, 945 |
| BspHI | TCATGA | 1 cut(s) | 832 |
| BspLI | GGNNCC | 6 cut(s) | 59, 393, 457, 847, 1061, 1097 |
| BspPI | GGATC | 2 cut(s) | 386, 399 |
| BspT107I | GGYRCC | 1 cut(s) | 845 |
| BspTI | CTTAAG | 2 cut(s) | 62, 478 |
| BsrI | ACTGG | 1 cut(s) | 59 |
| BssECI | CCNNGG | 2 cut(s) | 906, 1106 |
| BssMI | GATC | 2 cut(s) | 343, 391 |
| BssNI | GRCGYC | 1 cut(s) | 846 |
| BssSI | CACGAG | 1 cut(s) | 291 |
| BssT1I | CCWWGG | 1 cut(s) | 1106 |
| Bst2BI | CACGAG | 1 cut(s) | 291 |
| Bst4CI | ACNGT | 5 cut(s) | 204, 275, 359, 516, 1064 |
| Bst6I | CTCTTC | 2 cut(s) | 73, 1076 |
| BstACI | GRCGYC | 1 cut(s) | 846 |
| BstAFI | CTTAAG | 2 cut(s) | 62, 478 |
| BstC8I | GCNNGC | 3 cut(s) | 369, 540, 1053 |
| BstDEI | CTNAG | 4 cut(s) | 278, 567, 915, 978 |
| BstDSI | CCRYGG | 2 cut(s) | 906, 1106 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 626 |
| BstF5I | GGATG | 2 cut(s) | 126, 502 |
| BstFNI | CGCG | 2 cut(s) | 605, 945 |
| BstH2I | RGCGCY | 1 cut(s) | 849 |
| BstHHI | GCGC | 5 cut(s) | 439, 470, 607, 848, 947 |
| BstKTI | GATC | 2 cut(s) | 346, 394 |
| BstMAI | GTCTC | 2 cut(s) | 422, 772 |
| BstMBI | GATC | 2 cut(s) | 343, 391 |
| BstMCI | CGRYCG | 3 cut(s) | 217, 381, 518 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 554, 563 |
| BstSFI | CTRYAG | 1 cut(s) | 937 |
| BstSLI | GKGCMC | 2 cut(s) | 309, 1057 |
| BstUI | CGCG | 2 cut(s) | 605, 945 |
| BstV1I | GCAGC | 4 cut(s) | 128, 259, 262, 676 |
| BstV2I | GAAGAC | 1 cut(s) | 639 |
| BstX2I | RGATCY | 1 cut(s) | 391 |
| BstYI | RGATCY | 1 cut(s) | 391 |
| BstZI | CGGCCG | 1 cut(s) | 214 |
| Bsu15I | ATCGAT | 1 cut(s) | 346 |
| Bsu36I | CCTNAGG | 1 cut(s) | 978 |
| BsuI | GTATCC | 1 cut(s) | 436 |
| BsuRI | GGCC | 3 cut(s) | 216, 484, 572 |
| BsuTUI | ATCGAT | 1 cut(s) | 346 |
| BtgI | CCRYGG | 2 cut(s) | 906, 1106 |
| BtgZI | GCGATG | 1 cut(s) | 727 |
| BtrI | CACGTC | 2 cut(s) | 287, 304 |
| BtsCI | GGATG | 2 cut(s) | 126, 502 |
| Cac8I | GCNNGC | 3 cut(s) | 369, 540, 1053 |
| CciI | TCATGA | 1 cut(s) | 832 |
| CfoI | GCGC | 5 cut(s) | 439, 470, 607, 848, 947 |
| Cfr13I | GGNCC | 2 cut(s) | 456, 1007 |
| ClaI | ATCGAT | 1 cut(s) | 346 |
| CseI | GACGC | 2 cut(s) | 611, 969 |
| CviAII | CATG | 7 cut(s) | 259, 403, 583, 595, 833, 850, 1107 |
| DdeI | CTNAG | 4 cut(s) | 278, 567, 915, 978 |
| DinI | GGCGCC | 1 cut(s) | 847 |
| DpnI | GATC | 2 cut(s) | 345, 393 |
| DpnII | GATC | 2 cut(s) | 343, 391 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1005 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1005 |
| EaeI | YGGCCR | 1 cut(s) | 214 |
| EagI | CGGCCG | 1 cut(s) | 214 |
| Eam1104I | CTCTTC | 2 cut(s) | 73, 1076 |
| EarI | CTCTTC | 2 cut(s) | 73, 1076 |
| EciI | GGCGGA | 1 cut(s) | 1108 |
| Ecl136II | GAGCTC | 1 cut(s) | 838 |
| EclXI | CGGCCG | 1 cut(s) | 214 |
| Eco130I | CCWWGG | 1 cut(s) | 1106 |
| Eco24I | GRGCYC | 1 cut(s) | 840 |
| Eco47I | GGWCC | 2 cut(s) | 456, 1007 |
| Eco52I | CGGCCG | 1 cut(s) | 214 |
| Eco53kI | GAGCTC | 1 cut(s) | 838 |
| Eco81I | CCTNAGG | 1 cut(s) | 978 |
| Eco88I | CYCGRG | 1 cut(s) | 425 |
| EcoICRI | GAGCTC | 1 cut(s) | 838 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 626 |
| EcoRI | GAATTC | 1 cut(s) | 491 |
| EcoT14I | CCWWGG | 1 cut(s) | 1106 |
| EcoT38I | GRGCYC | 1 cut(s) | 840 |
| EgeI | GGCGCC | 1 cut(s) | 847 |
| EheI | GGCGCC | 1 cut(s) | 847 |
| ErhI | CCWWGG | 1 cut(s) | 1106 |
| Esp3I | CGTCTC | 1 cut(s) | 772 |
| FaeI | CATG | 7 cut(s) | 262, 406, 586, 598, 836, 853, 1110 |
| FaqI | GGGAC | 3 cut(s) | 314, 404, 1001 |
| FatI | CATG | 7 cut(s) | 258, 402, 582, 594, 832, 849, 1106 |
| FblI | GTMKAC | 1 cut(s) | 746 |
| Fnu4HI | GCNGC | 5 cut(s) | 142, 214, 248, 251, 665 |
| FokI | GGATG | 2 cut(s) | 133, 489 |
| FriOI | GRGCYC | 1 cut(s) | 840 |
| Fsp4HI | GCNGC | 5 cut(s) | 142, 214, 248, 251, 665 |
| FspBI | CTAG | 2 cut(s) | 659, 900 |
| GlaI | GCGC | 5 cut(s) | 438, 469, 606, 847, 946 |
| GluI | GCNGC | 5 cut(s) | 142, 214, 248, 251, 665 |
| GsuI | CTGGAG | 1 cut(s) | 76 |
| HaeII | RGCGCY | 1 cut(s) | 849 |
| HaeIII | GGCC | 3 cut(s) | 216, 484, 572 |
| HapII | CCGG | 4 cut(s) | 18, 177, 217, 926 |
| HgaI | GACGC | 2 cut(s) | 611, 969 |
| HhaI | GCGC | 5 cut(s) | 439, 470, 607, 848, 947 |
| Hin1I | GRCGYC | 1 cut(s) | 846 |
| Hin1II | CATG | 7 cut(s) | 262, 406, 586, 598, 836, 853, 1110 |
| Hin6I | GCGC | 5 cut(s) | 437, 468, 605, 846, 945 |
| HinP1I | GCGC | 5 cut(s) | 437, 468, 605, 846, 945 |
| HincII | GTYRAC | 1 cut(s) | 1073 |
| HindII | GTYRAC | 1 cut(s) | 1073 |
| HinfI | GANTC | 4 cut(s) | 14, 136, 686, 929 |
| HpaII | CCGG | 4 cut(s) | 18, 177, 217, 926 |
| HphI | GGTGA | 2 cut(s) | 23, 1031 |
| Hpy166II | GTNNAC | 3 cut(s) | 747, 1055, 1073 |
| Hpy188I | TCNGA | 5 cut(s) | 70, 460, 497, 798, 1103 |
| Hpy188III | TCNNGA | 9 cut(s) | 18, 233, 409, 427, 683, 698, 833, 926, 996 |
| Hpy8I | GTNNAC | 3 cut(s) | 747, 1055, 1073 |
| Hpy99I | CGWCG | 2 cut(s) | 187, 288 |
| HpyAV | CCTTC | 2 cut(s) | 769, 1025 |
| HpyCH4III | ACNGT | 5 cut(s) | 204, 275, 359, 516, 1064 |
| HpyCH4IV | ACGT | 8 cut(s) | 286, 303, 522, 678, 817, 855, 1000, 1075 |
| HpyCH4V | TGCA | 7 cut(s) | 247, 269, 371, 402, 773, 812, 1055 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 554, 563 |
| HpyF3I | CTNAG | 4 cut(s) | 278, 567, 915, 978 |
| HpySE526I | ACGT | 8 cut(s) | 286, 303, 522, 678, 817, 855, 1000, 1075 |
| Hsp92I | GRCGYC | 1 cut(s) | 846 |
| Hsp92II | CATG | 7 cut(s) | 262, 406, 586, 598, 836, 853, 1110 |
| HspAI | GCGC | 5 cut(s) | 437, 468, 605, 846, 945 |
| KasI | GGCGCC | 1 cut(s) | 845 |
| Kpn2I | TCCGGA | 2 cut(s) | 17, 925 |
| Kzo9I | GATC | 2 cut(s) | 343, 391 |
| LmnI | GCTCC | 6 cut(s) | 57, 179, 364, 612, 967, 1095 |
| Lsp1109I | GCAGC | 4 cut(s) | 128, 259, 262, 676 |
| MaeI | CTAG | 2 cut(s) | 659, 900 |
| MaeII | ACGT | 8 cut(s) | 286, 303, 522, 678, 817, 855, 1000, 1075 |
| MaeIII | GTNAC | 1 cut(s) | 683 |
| MalI | GATC | 2 cut(s) | 345, 393 |
| MboI | GATC | 2 cut(s) | 343, 391 |
| MboII | GAAGA | 5 cut(s) | 61, 90, 644, 898, 1093 |
| MflI | RGATCY | 1 cut(s) | 391 |
| MhlI | GDGCHC | 6 cut(s) | 292, 309, 514, 528, 840, 1057 |
| MluCI | AATT | 6 cut(s) | 317, 383, 491, 576, 790, 991 |
| Mly113I | GGCGCC | 1 cut(s) | 846 |
| MlyI | GAGTC | 3 cut(s) | 145, 680, 938 |
| MroI | TCCGGA | 2 cut(s) | 17, 925 |
| MseI | TTAA | 4 cut(s) | 63, 224, 386, 479 |
| MslI | CAYNNNNRTG | 1 cut(s) | 597 |
| MspCI | CTTAAG | 2 cut(s) | 62, 478 |
| MspI | CCGG | 4 cut(s) | 18, 177, 217, 926 |
| MvnI | CGCG | 2 cut(s) | 605, 945 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 554, 563 |
| NarI | GGCGCC | 1 cut(s) | 846 |
| NcoI | CCATGG | 1 cut(s) | 1106 |
| NdeII | GATC | 2 cut(s) | 343, 391 |
| NlaIII | CATG | 7 cut(s) | 262, 406, 586, 598, 836, 853, 1110 |
| NlaIV | GGNNCC | 6 cut(s) | 59, 393, 457, 847, 1061, 1097 |
| NmuCI | GTSAC | 1 cut(s) | 683 |
| PaeR7I | CTCGAG | 1 cut(s) | 425 |
| PagI | TCATGA | 1 cut(s) | 832 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 967 |
| PfeI | GAWTC | 1 cut(s) | 14 |
| PkrI | GCNGC | 5 cut(s) | 143, 215, 249, 252, 666 |
| PleI | GAGTC | 3 cut(s) | 144, 680, 937 |
| PluTI | GGCGCC | 1 cut(s) | 849 |
| PpsI | GAGTC | 3 cut(s) | 144, 680, 937 |
| Psp124BI | GAGCTC | 1 cut(s) | 840 |
| Psp1406I | AACGTT | 1 cut(s) | 678 |
| PspN4I | GGNNCC | 6 cut(s) | 59, 393, 457, 847, 1061, 1097 |
| PspPI | GGNCC | 2 cut(s) | 456, 1007 |
| PsuI | RGATCY | 1 cut(s) | 391 |
| RseI | CAYNNNNRTG | 1 cut(s) | 597 |
| SacI | GAGCTC | 1 cut(s) | 840 |
| SaqAI | TTAA | 4 cut(s) | 63, 224, 386, 479 |
| SatI | GCNGC | 5 cut(s) | 142, 214, 248, 251, 665 |
| Sau3AI | GATC | 2 cut(s) | 343, 391 |
| Sau96I | GGNCC | 2 cut(s) | 456, 1007 |
| SchI | GAGTC | 3 cut(s) | 145, 680, 938 |
| SduI | GDGCHC | 6 cut(s) | 292, 309, 514, 528, 840, 1057 |
| SfcI | CTRYAG | 1 cut(s) | 937 |
| SfoI | GGCGCC | 1 cut(s) | 847 |
| Sfr274I | CTCGAG | 1 cut(s) | 425 |
| SinI | GGWCC | 2 cut(s) | 456, 1007 |
| SlaI | CTCGAG | 1 cut(s) | 425 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 597 |
| SmlI | CTYRAG | 4 cut(s) | 62, 409, 425, 478 |
| SmoI | CTYRAG | 4 cut(s) | 62, 409, 425, 478 |
| Sse9I | AATT | 6 cut(s) | 317, 383, 491, 576, 790, 991 |
| SsiI | CCGC | 4 cut(s) | 96, 213, 727, 1093 |
| SspDI | GGCGCC | 1 cut(s) | 845 |
| SspMI | CTAG | 2 cut(s) | 659, 900 |
| SstI | GAGCTC | 1 cut(s) | 840 |
| StyI | CCWWGG | 1 cut(s) | 1106 |
| TaaI | ACNGT | 5 cut(s) | 204, 275, 359, 516, 1064 |
| TaiI | ACGT | 8 cut(s) | 289, 306, 525, 681, 820, 858, 1003, 1078 |
| TaqI | TCGA | 5 cut(s) | 234, 346, 426, 518, 534 |
| TaqII | GACCGA | 1 cut(s) | 395 |
| TasI | AATT | 6 cut(s) | 317, 383, 491, 576, 790, 991 |
| TauI | GCSGC | 1 cut(s) | 216 |
| TfiI | GAWTC | 1 cut(s) | 14 |
| Tru1I | TTAA | 4 cut(s) | 63, 224, 386, 479 |
| Tru9I | TTAA | 4 cut(s) | 63, 224, 386, 479 |
| TseFI | GTSAC | 1 cut(s) | 683 |
| TseI | GCWGC | 4 cut(s) | 141, 247, 250, 664 |
| Tsp45I | GTSAC | 1 cut(s) | 683 |
| TspDTI | ATGAA | 5 cut(s) | 611, 630, 821, 866, 899 |
| TspGWI | ACGGA | 2 cut(s) | 200, 1072 |
| Vha464I | CTTAAG | 2 cut(s) | 62, 478 |
| VneI | GTGCAC | 1 cut(s) | 1053 |
| VpaK11BI | GGWCC | 2 cut(s) | 456, 1007 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 626 |
| XapI | RAATTY | 1 cut(s) | 491 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 645 |
| XhoI | CTCGAG | 1 cut(s) | 425 |
| XmiI | GTMKAC | 1 cut(s) | 746 |
| XspI | CTAG | 2 cut(s) | 659, 900 |