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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 489, 534 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 597 |
| Acc36I | ACCTGC | 1 cut(s) | 624 |
| AccB1I | GGYRCC | 2 cut(s) | 121, 731 |
| AccBSI | CCGCTC | 1 cut(s) | 562 |
| AciI | CCGC | 5 cut(s) | 391, 562, 631, 644, 990 |
| AclI | AACGTT | 1 cut(s) | 516 |
| AclWI | GGATC | 3 cut(s) | 141, 422, 820 |
| AcsI | RAATTY | 1 cut(s) | 286 |
| AcuI | CTGAAG | 1 cut(s) | 417 |
| AcvI | CACGTG | 2 cut(s) | 653, 671 |
| AcyI | GRCGYC | 2 cut(s) | 190, 711 |
| AdeI | CACNNNGTG | 2 cut(s) | 656, 761 |
| AfeI | AGCGCT | 2 cut(s) | 258, 269 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 619, 672 |
| AflIII | ACRYGT | 3 cut(s) | 650, 668, 795 |
| AgsI | TTSAA | 7 cut(s) | 96, 307, 314, 495, 832, 864, 961 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 255, 287 |
| AluBI | AGCT | 4 cut(s) | 247, 433, 860, 965 |
| AluI | AGCT | 4 cut(s) | 247, 433, 860, 965 |
| Alw21I | GWGCWC | 2 cut(s) | 766, 981 |
| Alw26I | GTCTC | 2 cut(s) | 583, 927 |
| Alw44I | GTGCAC | 2 cut(s) | 762, 977 |
| AlwI | GGATC | 3 cut(s) | 141, 422, 820 |
| Aor51HI | AGCGCT | 2 cut(s) | 258, 269 |
| AoxI | GGCC | 1 cut(s) | 497 |
| ApaLI | GTGCAC | 2 cut(s) | 762, 977 |
| ApoI | RAATTY | 1 cut(s) | 286 |
| AspA2I | CCTAGG | 1 cut(s) | 743 |
| AspLEI | GCGC | 2 cut(s) | 259, 270 |
| AspS9I | GGNCC | 3 cut(s) | 498, 599, 883 |
| AsuC2I | CCSGG | 1 cut(s) | 131 |
| AsuHPI | GGTGA | 2 cut(s) | 538, 937 |
| AvaII | GGWCC | 2 cut(s) | 599, 883 |
| AvrII | CCTAGG | 1 cut(s) | 743 |
| AxyI | CCTNAGG | 1 cut(s) | 887 |
| BaeGI | GKGCMC | 2 cut(s) | 766, 981 |
| BanI | GGYRCC | 2 cut(s) | 121, 731 |
| BauI | CACGAG | 2 cut(s) | 418, 476 |
| BbrPI | CACGTG | 2 cut(s) | 653, 671 |
| Bbv12I | GWGCWC | 2 cut(s) | 766, 981 |
| BccI | CCATC | 1 cut(s) | 948 |
| BciVI | GTATCC | 1 cut(s) | 640 |
| BcnI | CCSGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 2 cut(s) | 583, 927 |
| BfaI | CTAG | 5 cut(s) | 15, 260, 326, 744, 857 |
| BfmI | CTRYAG | 1 cut(s) | 450 |
| BfoI | RGCGCY | 2 cut(s) | 260, 271 |
| BfuAI | ACCTGC | 1 cut(s) | 624 |
| BfuI | GTATCC | 1 cut(s) | 640 |
| BisI | GCNGC | 1 cut(s) | 990 |
| BlnI | CCTAGG | 1 cut(s) | 743 |
| BlsI | GCNGC | 1 cut(s) | 991 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| Bme18I | GGWCC | 2 cut(s) | 599, 883 |
| BmgT120I | GGNCC | 3 cut(s) | 498, 599, 883 |
| BmiI | GGNNCC | 5 cut(s) | 123, 566, 600, 733, 884 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 3 cut(s) | 174, 226, 976 |
| BoxI | GACNNNNGTC | 1 cut(s) | 798 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| BpuMI | CCSGG | 1 cut(s) | 131 |
| Bsa29I | ATCGAT | 1 cut(s) | 805 |
| BsaAI | YACGTR | 2 cut(s) | 653, 671 |
| BsaBI | GATNNNNATC | 1 cut(s) | 811 |
| BsaHI | GRCGYC | 2 cut(s) | 190, 711 |
| BsaJI | CCNNGG | 1 cut(s) | 743 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 667, 697, 724, 754 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 619, 672 |
| Bse21I | CCTNAGG | 1 cut(s) | 887 |
| Bse3DI | GCAATG | 3 cut(s) | 283, 667, 842 |
| Bse8I | GATNNNNATC | 1 cut(s) | 811 |
| BseCI | ATCGAT | 1 cut(s) | 805 |
| BseDI | CCNNGG | 1 cut(s) | 743 |
| BseGI | GGATG | 3 cut(s) | 241, 936, 991 |
| BseJI | GATNNNNATC | 1 cut(s) | 811 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 619, 672 |
| BseMI | GCAATG | 3 cut(s) | 283, 667, 842 |
| BseMII | CTCAG | 2 cut(s) | 782, 878 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseSI | GKGCMC | 2 cut(s) | 766, 981 |
| BshFI | GGCC | 1 cut(s) | 499 |
| BshNI | GGYRCC | 2 cut(s) | 121, 731 |
| BshVI | ATCGAT | 1 cut(s) | 805 |
| BsiHKAI | GWGCWC | 2 cut(s) | 766, 981 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BslFI | GGGAC | 1 cut(s) | 896 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 619, 672 |
| BsmAI | GTCTC | 2 cut(s) | 583, 927 |
| BsmBI | CGTCTC | 1 cut(s) | 583 |
| BsmFI | GGGAC | 1 cut(s) | 896 |
| BsmI | GAATGC | 1 cut(s) | 755 |
| BsnI | GGCC | 1 cut(s) | 499 |
| Bsp1286I | GDGCHC | 2 cut(s) | 766, 981 |
| Bsp143I | GATC | 4 cut(s) | 133, 228, 414, 812 |
| BspACI | CCGC | 5 cut(s) | 391, 562, 631, 644, 990 |
| BspANI | GGCC | 1 cut(s) | 499 |
| BspCNI | CTCAG | 2 cut(s) | 781, 879 |
| BspDI | ATCGAT | 1 cut(s) | 805 |
| BspHI | TCATGA | 1 cut(s) | 520 |
| BspLI | GGNNCC | 5 cut(s) | 123, 566, 600, 733, 884 |
| BspMI | ACCTGC | 1 cut(s) | 624 |
| BspPI | GGATC | 3 cut(s) | 141, 422, 820 |
| BspQI | GCTCTTC | 1 cut(s) | 258 |
| BspT107I | GGYRCC | 2 cut(s) | 121, 731 |
| BsrBI | CCGCTC | 1 cut(s) | 562 |
| BsrDI | GCAATG | 3 cut(s) | 283, 667, 842 |
| BssECI | CCNNGG | 1 cut(s) | 743 |
| BssMI | GATC | 4 cut(s) | 133, 228, 414, 812 |
| BssNI | GRCGYC | 2 cut(s) | 190, 711 |
| BssSI | CACGAG | 2 cut(s) | 418, 476 |
| BssT1I | CCWWGG | 1 cut(s) | 743 |
| Bst2BI | CACGAG | 2 cut(s) | 418, 476 |
| Bst6I | CTCTTC | 1 cut(s) | 258 |
| BstACI | GRCGYC | 2 cut(s) | 190, 711 |
| BstBAI | YACGTR | 2 cut(s) | 653, 671 |
| BstC8I | GCNNGC | 2 cut(s) | 847, 851 |
| BstDEI | CTNAG | 3 cut(s) | 570, 768, 887 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstF5I | GGATG | 3 cut(s) | 241, 936, 991 |
| BstH2I | RGCGCY | 2 cut(s) | 260, 271 |
| BstHHI | GCGC | 2 cut(s) | 259, 270 |
| BstKTI | GATC | 4 cut(s) | 136, 231, 417, 815 |
| BstMAI | GTCTC | 2 cut(s) | 583, 927 |
| BstMBI | GATC | 4 cut(s) | 133, 228, 414, 812 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 265, 846 |
| BstNSI | RCATGY | 2 cut(s) | 167, 799 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 798 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSFI | CTRYAG | 1 cut(s) | 450 |
| BstSLI | GKGCMC | 2 cut(s) | 766, 981 |
| Bsu15I | ATCGAT | 1 cut(s) | 805 |
| Bsu36I | CCTNAGG | 1 cut(s) | 887 |
| BsuI | GTATCC | 1 cut(s) | 640 |
| BsuRI | GGCC | 1 cut(s) | 499 |
| BsuTUI | ATCGAT | 1 cut(s) | 805 |
| BtsCI | GGATG | 3 cut(s) | 241, 936, 991 |
| BtsIMutI | CAGTG | 1 cut(s) | 393 |
| BveI | ACCTGC | 1 cut(s) | 624 |
| Cac8I | GCNNGC | 2 cut(s) | 847, 851 |
| CciI | TCATGA | 1 cut(s) | 520 |
| CfoI | GCGC | 2 cut(s) | 259, 270 |
| Cfr13I | GGNCC | 3 cut(s) | 498, 599, 883 |
| ClaI | ATCGAT | 1 cut(s) | 805 |
| CseI | GACGC | 2 cut(s) | 198, 700 |
| CviAII | CATG | 5 cut(s) | 164, 464, 521, 796, 871 |
| CviJI | RGCY | 8 cut(s) | 48, 84, 247, 368, 433, 499, 860, 965 |
| CviKI_1 | RGCY | 8 cut(s) | 48, 84, 247, 368, 433, 499, 860, 965 |
| DdeI | CTNAG | 3 cut(s) | 570, 768, 887 |
| DpnI | GATC | 4 cut(s) | 135, 230, 416, 814 |
| DpnII | GATC | 4 cut(s) | 133, 228, 414, 812 |
| DraIII | CACNNNGTG | 2 cut(s) | 656, 761 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 597 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 597 |
| Eam1104I | CTCTTC | 1 cut(s) | 258 |
| EarI | CTCTTC | 1 cut(s) | 258 |
| Eco130I | CCWWGG | 1 cut(s) | 743 |
| Eco47I | GGWCC | 2 cut(s) | 599, 883 |
| Eco47III | AGCGCT | 2 cut(s) | 258, 269 |
| Eco57I | CTGAAG | 1 cut(s) | 417 |
| Eco72I | CACGTG | 2 cut(s) | 653, 671 |
| Eco81I | CCTNAGG | 1 cut(s) | 887 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO109I | RGGNCCY | 1 cut(s) | 883 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoT14I | CCWWGG | 1 cut(s) | 743 |
| ErhI | CCWWGG | 1 cut(s) | 743 |
| Esp3I | CGTCTC | 1 cut(s) | 583 |
| FaeI | CATG | 5 cut(s) | 167, 467, 524, 799, 874 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 891, 923 |
| FaqI | GGGAC | 1 cut(s) | 896 |
| FatI | CATG | 5 cut(s) | 163, 463, 520, 795, 870 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| Fnu4HI | GCNGC | 1 cut(s) | 990 |
| FokI | GGATG | 3 cut(s) | 248, 923, 998 |
| Fsp4HI | GCNGC | 1 cut(s) | 990 |
| FspBI | CTAG | 5 cut(s) | 15, 260, 326, 744, 857 |
| GlaI | GCGC | 2 cut(s) | 258, 269 |
| GluI | GCNGC | 1 cut(s) | 990 |
| HaeII | RGCGCY | 2 cut(s) | 260, 271 |
| HaeIII | GGCC | 1 cut(s) | 499 |
| HapII | CCGG | 1 cut(s) | 131 |
| HgaI | GACGC | 2 cut(s) | 198, 700 |
| HhaI | GCGC | 2 cut(s) | 259, 270 |
| Hin1I | GRCGYC | 2 cut(s) | 190, 711 |
| Hin1II | CATG | 5 cut(s) | 167, 467, 524, 799, 874 |
| Hin6I | GCGC | 2 cut(s) | 257, 268 |
| HinP1I | GCGC | 2 cut(s) | 257, 268 |
| HinfI | GANTC | 2 cut(s) | 18, 38 |
| HpaII | CCGG | 1 cut(s) | 131 |
| HphI | GGTGA | 2 cut(s) | 538, 937 |
| Hpy166II | GTNNAC | 2 cut(s) | 764, 979 |
| Hpy188I | TCNGA | 1 cut(s) | 52 |
| Hpy188III | TCNNGA | 5 cut(s) | 181, 418, 478, 521, 864 |
| Hpy8I | GTNNAC | 2 cut(s) | 764, 979 |
| Hpy99I | CGWCG | 1 cut(s) | 192 |
| HpyAV | CCTTC | 2 cut(s) | 301, 617 |
| HpyCH4IV | ACGT | 5 cut(s) | 516, 592, 652, 670, 760 |
| HpyCH4V | TGCA | 6 cut(s) | 239, 539, 555, 764, 840, 979 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 265, 846 |
| HpyF3I | CTNAG | 3 cut(s) | 570, 768, 887 |
| HpySE526I | ACGT | 5 cut(s) | 516, 592, 652, 670, 760 |
| Hsp92I | GRCGYC | 2 cut(s) | 190, 711 |
| Hsp92II | CATG | 5 cut(s) | 167, 467, 524, 799, 874 |
| HspAI | GCGC | 2 cut(s) | 257, 268 |
| Kzo9I | GATC | 4 cut(s) | 133, 228, 414, 812 |
| LguI | GCTCTTC | 1 cut(s) | 258 |
| LmnI | GCTCC | 2 cut(s) | 559, 892 |
| LweI | GCATC | 3 cut(s) | 174, 226, 976 |
| MaeI | CTAG | 5 cut(s) | 15, 260, 326, 744, 857 |
| MaeII | ACGT | 5 cut(s) | 516, 592, 652, 670, 760 |
| MaeIII | GTNAC | 1 cut(s) | 67 |
| MalI | GATC | 4 cut(s) | 135, 230, 416, 814 |
| MbiI | CCGCTC | 1 cut(s) | 562 |
| MboI | GATC | 4 cut(s) | 133, 228, 414, 812 |
| MboII | GAAGA | 4 cut(s) | 275, 926, 929, 932 |
| MhlI | GDGCHC | 2 cut(s) | 766, 981 |
| MluCI | AATT | 6 cut(s) | 114, 286, 333, 484, 490, 529 |
| MlyI | GAGTC | 2 cut(s) | 12, 32 |
| MseI | TTAA | 1 cut(s) | 773 |
| MslI | CAYNNNNRTG | 3 cut(s) | 476, 807, 984 |
| MspI | CCGG | 1 cut(s) | 131 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| Mva1269I | GAATGC | 1 cut(s) | 755 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 265, 846 |
| NciI | CCSGG | 1 cut(s) | 131 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 4 cut(s) | 133, 228, 414, 812 |
| NlaIII | CATG | 5 cut(s) | 167, 467, 524, 799, 874 |
| NlaIV | GGNNCC | 5 cut(s) | 123, 566, 600, 733, 884 |
| NspI | RCATGY | 2 cut(s) | 167, 799 |
| PagI | TCATGA | 1 cut(s) | 520 |
| PciI | ACATGT | 1 cut(s) | 795 |
| PciSI | GCTCTTC | 1 cut(s) | 258 |
| PctI | GAATGC | 1 cut(s) | 755 |
| PkrI | GCNGC | 1 cut(s) | 991 |
| PleI | GAGTC | 2 cut(s) | 12, 32 |
| PmaCI | CACGTG | 2 cut(s) | 653, 671 |
| PmlI | CACGTG | 2 cut(s) | 653, 671 |
| PpsI | GAGTC | 2 cut(s) | 12, 32 |
| Ppu21I | YACGTR | 2 cut(s) | 653, 671 |
| PpuMI | RGGWCCY | 1 cut(s) | 883 |
| PscI | ACATGT | 1 cut(s) | 795 |
| PshAI | GACNNNNGTC | 1 cut(s) | 798 |
| PsiI | TTATAA | 2 cut(s) | 489, 534 |
| Psp1406I | AACGTT | 1 cut(s) | 516 |
| Psp5II | RGGWCCY | 1 cut(s) | 883 |
| PspCI | CACGTG | 2 cut(s) | 653, 671 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspN4I | GGNNCC | 5 cut(s) | 123, 566, 600, 733, 884 |
| PspPI | GGNCC | 3 cut(s) | 498, 599, 883 |
| PspPPI | RGGWCCY | 1 cut(s) | 883 |
| RseI | CAYNNNNRTG | 3 cut(s) | 476, 807, 984 |
| SapI | GCTCTTC | 1 cut(s) | 258 |
| SaqAI | TTAA | 1 cut(s) | 773 |
| SatI | GCNGC | 1 cut(s) | 990 |
| Sau3AI | GATC | 4 cut(s) | 133, 228, 414, 812 |
| Sau96I | GGNCC | 3 cut(s) | 498, 599, 883 |
| SchI | GAGTC | 2 cut(s) | 12, 32 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 2 cut(s) | 766, 981 |
| SfaNI | GCATC | 3 cut(s) | 174, 226, 976 |
| SfcI | CTRYAG | 1 cut(s) | 450 |
| SinI | GGWCC | 2 cut(s) | 599, 883 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 476, 807, 984 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| Sse9I | AATT | 6 cut(s) | 114, 286, 333, 484, 490, 529 |
| SsiI | CCGC | 5 cut(s) | 391, 562, 631, 644, 990 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 5 cut(s) | 15, 260, 326, 744, 857 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| StyI | CCWWGG | 1 cut(s) | 743 |
| TaiI | ACGT | 5 cut(s) | 519, 595, 655, 673, 763 |
| TaqI | TCGA | 3 cut(s) | 5, 227, 805 |
| TasI | AATT | 6 cut(s) | 114, 286, 333, 484, 490, 529 |
| TauI | GCSGC | 1 cut(s) | 992 |
| Tru1I | TTAA | 1 cut(s) | 773 |
| Tru9I | TTAA | 1 cut(s) | 773 |
| TscAI | CASTG | 1 cut(s) | 400 |
| TspDTI | ATGAA | 4 cut(s) | 24, 416, 509, 987 |
| TspGWI | ACGGA | 1 cut(s) | 427 |
| TspRI | CASTG | 1 cut(s) | 400 |
| VneI | GTGCAC | 2 cut(s) | 762, 977 |
| VpaK11BI | GGWCC | 2 cut(s) | 599, 883 |
| XapI | RAATTY | 1 cut(s) | 286 |
| XceI | RCATGY | 2 cut(s) | 167, 799 |
| XmaJI | CCTAGG | 1 cut(s) | 743 |
| XspI | CTAG | 5 cut(s) | 15, 260, 326, 744, 857 |