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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 367 |
| AclI | AACGTT | 1 cut(s) | 318 |
| AclWI | GGATC | 3 cut(s) | 100, 112, 113 |
| AcsI | RAATTY | 1 cut(s) | 434 |
| AcyI | GRCGYC | 1 cut(s) | 243 |
| AfaI | GTAC | 3 cut(s) | 128, 260, 390 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 67, 268 |
| AflII | CTTAAG | 1 cut(s) | 92 |
| AgsI | TTSAA | 2 cut(s) | 173, 382 |
| AjiI | CACGTC | 1 cut(s) | 142 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 97, 129 |
| AluBI | AGCT | 4 cut(s) | 27, 161, 185, 206 |
| AluI | AGCT | 4 cut(s) | 27, 161, 185, 206 |
| Alw26I | GTCTC | 1 cut(s) | 35 |
| AlwI | GGATC | 3 cut(s) | 100, 112, 113 |
| Ama87I | CYCGRG | 1 cut(s) | 299 |
| AoxI | GGCC | 1 cut(s) | 361 |
| ApeKI | GCWGC | 2 cut(s) | 161, 304 |
| ApoI | RAATTY | 1 cut(s) | 434 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 411 |
| AspLEI | GCGC | 1 cut(s) | 84 |
| AspS9I | GGNCC | 1 cut(s) | 70 |
| AvaI | CYCGRG | 1 cut(s) | 299 |
| AvaII | GGWCC | 1 cut(s) | 70 |
| BamHI | GGATCC | 1 cut(s) | 105 |
| BbsI | GAAGAC | 1 cut(s) | 279 |
| BbvI | GCAGC | 2 cut(s) | 148, 316 |
| BccI | CCATC | 3 cut(s) | 95, 221, 348 |
| BciVI | GTATCC | 1 cut(s) | 50 |
| BcoDI | GTCTC | 1 cut(s) | 35 |
| BfaI | CTAG | 1 cut(s) | 38 |
| BfrI | CTTAAG | 1 cut(s) | 92 |
| BfuI | GTATCC | 1 cut(s) | 50 |
| BisI | GCNGC | 2 cut(s) | 162, 305 |
| BlsI | GCNGC | 2 cut(s) | 163, 306 |
| BmcAI | AGTACT | 1 cut(s) | 128 |
| Bme18I | GGWCC | 1 cut(s) | 70 |
| BmeT110I | CYCGRG | 1 cut(s) | 299 |
| BmgBI | CACGTC | 1 cut(s) | 142 |
| BmgT120I | GGNCC | 1 cut(s) | 70 |
| BmiI | GGNNCC | 2 cut(s) | 71, 107 |
| BmsI | GCATC | 1 cut(s) | 97 |
| BpiI | GAAGAC | 1 cut(s) | 279 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 16, 48 |
| BpmI | CTGGAG | 1 cut(s) | 233 |
| BpuEI | CTTGAG | 1 cut(s) | 115 |
| BsaHI | GRCGYC | 1 cut(s) | 243 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 67, 268 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 67, 268 |
| BseMII | CTCAG | 1 cut(s) | 101 |
| BseRI | GAGGAG | 1 cut(s) | 141 |
| BseXI | GCAGC | 2 cut(s) | 148, 316 |
| BshFI | GGCC | 1 cut(s) | 363 |
| BsiHKCI | CYCGRG | 1 cut(s) | 299 |
| BslFI | GGGAC | 1 cut(s) | 152 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 67, 268 |
| BsmAI | GTCTC | 1 cut(s) | 35 |
| BsmFI | GGGAC | 1 cut(s) | 152 |
| BsnI | GGCC | 1 cut(s) | 363 |
| BsoBI | CYCGRG | 1 cut(s) | 299 |
| Bsp143I | GATC | 2 cut(s) | 105, 117 |
| BspACI | CCGC | 1 cut(s) | 367 |
| BspANI | GGCC | 1 cut(s) | 363 |
| BspCNI | CTCAG | 1 cut(s) | 102 |
| BspHI | TCATGA | 1 cut(s) | 222 |
| BspLI | GGNNCC | 2 cut(s) | 71, 107 |
| BspPI | GGATC | 3 cut(s) | 100, 112, 113 |
| BspTI | CTTAAG | 1 cut(s) | 92 |
| BssMI | GATC | 2 cut(s) | 105, 117 |
| BssNI | GRCGYC | 1 cut(s) | 243 |
| BstACI | GRCGYC | 1 cut(s) | 243 |
| BstAFI | CTTAAG | 1 cut(s) | 92 |
| BstC8I | GCNNGC | 1 cut(s) | 86 |
| BstDEI | CTNAG | 2 cut(s) | 110, 343 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 266 |
| BstHHI | GCGC | 1 cut(s) | 84 |
| BstKTI | GATC | 2 cut(s) | 108, 120 |
| BstMAI | GTCTC | 1 cut(s) | 35 |
| BstMBI | GATC | 2 cut(s) | 105, 117 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 182, 203 |
| BstV1I | GCAGC | 2 cut(s) | 148, 316 |
| BstV2I | GAAGAC | 1 cut(s) | 279 |
| BstX2I | RGATCY | 1 cut(s) | 105 |
| BstYI | RGATCY | 1 cut(s) | 105 |
| BsuI | GTATCC | 1 cut(s) | 50 |
| BsuRI | GGCC | 1 cut(s) | 363 |
| BtrI | CACGTC | 1 cut(s) | 142 |
| Cac8I | GCNNGC | 1 cut(s) | 86 |
| CciI | TCATGA | 1 cut(s) | 222 |
| CfoI | GCGC | 1 cut(s) | 84 |
| Cfr13I | GGNCC | 1 cut(s) | 70 |
| CseI | GACGC | 1 cut(s) | 251 |
| Csp6I | GTAC | 3 cut(s) | 127, 259, 389 |
| CviAII | CATG | 3 cut(s) | 223, 235, 359 |
| CviJI | RGCY | 6 cut(s) | 27, 98, 161, 185, 206, 363 |
| CviKI_1 | RGCY | 6 cut(s) | 27, 98, 161, 185, 206, 363 |
| CviQI | GTAC | 3 cut(s) | 127, 259, 389 |
| DdeI | CTNAG | 2 cut(s) | 110, 343 |
| DpnI | GATC | 2 cut(s) | 107, 119 |
| DpnII | GATC | 2 cut(s) | 105, 117 |
| EciI | GGCGGA | 1 cut(s) | 356 |
| Eco47I | GGWCC | 1 cut(s) | 70 |
| Eco88I | CYCGRG | 1 cut(s) | 299 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 266 |
| EcoRI | GAATTC | 1 cut(s) | 434 |
| FaeI | CATG | 3 cut(s) | 226, 238, 362 |
| FaiI | YATR | 5 cut(s) | 224, 236, 289, 360, 431 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 11, 43 |
| FaqI | GGGAC | 1 cut(s) | 152 |
| FatI | CATG | 3 cut(s) | 222, 234, 358 |
| Fnu4HI | GCNGC | 2 cut(s) | 162, 305 |
| Fsp4HI | GCNGC | 2 cut(s) | 162, 305 |
| FspBI | CTAG | 1 cut(s) | 38 |
| GlaI | GCGC | 1 cut(s) | 83 |
| GluI | GCNGC | 2 cut(s) | 162, 305 |
| GsuI | CTGGAG | 1 cut(s) | 233 |
| HaeIII | GGCC | 1 cut(s) | 363 |
| HgaI | GACGC | 1 cut(s) | 251 |
| HhaI | GCGC | 1 cut(s) | 84 |
| Hin1I | GRCGYC | 1 cut(s) | 243 |
| Hin1II | CATG | 3 cut(s) | 226, 238, 362 |
| Hin6I | GCGC | 1 cut(s) | 82 |
| HinP1I | GCGC | 1 cut(s) | 82 |
| Hpy188I | TCNGA | 1 cut(s) | 406 |
| Hpy188III | TCNNGA | 5 cut(s) | 109, 137, 223, 250, 323 |
| HpyCH4IV | ACGT | 2 cut(s) | 141, 318 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 182, 203 |
| HpyF3I | CTNAG | 2 cut(s) | 110, 343 |
| HpySE526I | ACGT | 2 cut(s) | 141, 318 |
| Hsp92I | GRCGYC | 1 cut(s) | 243 |
| Hsp92II | CATG | 3 cut(s) | 226, 238, 362 |
| HspAI | GCGC | 1 cut(s) | 82 |
| Kzo9I | GATC | 2 cut(s) | 105, 117 |
| LmnI | GCTCC | 2 cut(s) | 37, 50 |
| LpnPI | CCDG | 6 cut(s) | 26, 33, 39, 98, 122, 263 |
| Lsp1109I | GCAGC | 2 cut(s) | 148, 316 |
| LweI | GCATC | 1 cut(s) | 97 |
| MaeI | CTAG | 1 cut(s) | 38 |
| MaeII | ACGT | 2 cut(s) | 141, 318 |
| MaeIII | GTNAC | 2 cut(s) | 8, 323 |
| MalI | GATC | 2 cut(s) | 107, 119 |
| MboI | GATC | 2 cut(s) | 105, 117 |
| MboII | GAAGA | 1 cut(s) | 284 |
| MflI | RGATCY | 1 cut(s) | 105 |
| MluCI | AATT | 2 cut(s) | 400, 434 |
| MnlI | CCTC | 6 cut(s) | 162, 257, 262, 272, 374, 380 |
| MroXI | GAANNNNTTC | 1 cut(s) | 411 |
| MseI | TTAA | 1 cut(s) | 93 |
| MslI | CAYNNNNRTG | 2 cut(s) | 221, 237 |
| MspCI | CTTAAG | 1 cut(s) | 92 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 182, 203 |
| NdeII | GATC | 2 cut(s) | 105, 117 |
| NlaIII | CATG | 3 cut(s) | 226, 238, 362 |
| NlaIV | GGNNCC | 2 cut(s) | 71, 107 |
| NmuCI | GTSAC | 1 cut(s) | 323 |
| PaeR7I | CTCGAG | 1 cut(s) | 299 |
| PagI | TCATGA | 1 cut(s) | 222 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 194 |
| PdmI | GAANNNNTTC | 1 cut(s) | 411 |
| PkrI | GCNGC | 2 cut(s) | 163, 306 |
| Psp1406I | AACGTT | 1 cut(s) | 318 |
| PspN4I | GGNNCC | 2 cut(s) | 71, 107 |
| PspPI | GGNCC | 1 cut(s) | 70 |
| PspXI | VCTCGAGB | 1 cut(s) | 299 |
| PsuI | RGATCY | 1 cut(s) | 105 |
| RsaI | GTAC | 3 cut(s) | 128, 260, 390 |
| RsaNI | GTAC | 3 cut(s) | 127, 259, 389 |
| RseI | CAYNNNNRTG | 2 cut(s) | 221, 237 |
| SaqAI | TTAA | 1 cut(s) | 93 |
| SatI | GCNGC | 2 cut(s) | 162, 305 |
| Sau3AI | GATC | 2 cut(s) | 105, 117 |
| Sau96I | GGNCC | 1 cut(s) | 70 |
| ScaI | AGTACT | 1 cut(s) | 128 |
| SetI | ASST | 8 cut(s) | 15, 29, 144, 163, 187, 208, 264, 321 |
| SfaNI | GCATC | 1 cut(s) | 97 |
| Sfr274I | CTCGAG | 1 cut(s) | 299 |
| SinI | GGWCC | 1 cut(s) | 70 |
| SlaI | CTCGAG | 1 cut(s) | 299 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 221, 237 |
| SmlI | CTYRAG | 3 cut(s) | 92, 130, 299 |
| SmoI | CTYRAG | 3 cut(s) | 92, 130, 299 |
| Sse9I | AATT | 2 cut(s) | 400, 434 |
| SsiI | CCGC | 1 cut(s) | 367 |
| SspMI | CTAG | 1 cut(s) | 38 |
| TaiI | ACGT | 2 cut(s) | 144, 321 |
| TaqI | TCGA | 2 cut(s) | 116, 300 |
| TasI | AATT | 2 cut(s) | 400, 434 |
| TatI | WGTACW | 2 cut(s) | 126, 388 |
| Tru1I | TTAA | 1 cut(s) | 93 |
| Tru9I | TTAA | 1 cut(s) | 93 |
| TseFI | GTSAC | 1 cut(s) | 323 |
| TseI | GCWGC | 2 cut(s) | 161, 304 |
| Tsp45I | GTSAC | 1 cut(s) | 323 |
| TspDTI | ATGAA | 2 cut(s) | 216, 251 |
| TspGWI | ACGGA | 1 cut(s) | 62 |
| Vha464I | CTTAAG | 1 cut(s) | 92 |
| VpaK11BI | GGWCC | 1 cut(s) | 70 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 266 |
| XapI | RAATTY | 1 cut(s) | 434 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 285 |
| XhoI | CTCGAG | 1 cut(s) | 299 |
| XmnI | GAANNNNTTC | 1 cut(s) | 411 |
| XspI | CTAG | 1 cut(s) | 38 |
| ZrmI | AGTACT | 1 cut(s) | 128 |