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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 390, 435 |
| AccB1I | GGYRCC | 2 cut(s) | 611, 632 |
| AccI | GTMKAC | 1 cut(s) | 32 |
| AciI | CCGC | 1 cut(s) | 292 |
| AclWI | GGATC | 1 cut(s) | 323 |
| AcoI | YGGCCR | 1 cut(s) | 653 |
| AcuI | CTGAAG | 1 cut(s) | 318 |
| AcvI | CACGTG | 3 cut(s) | 321, 554, 572 |
| AcyI | GRCGYC | 1 cut(s) | 612 |
| AdeI | CACNNNGTG | 2 cut(s) | 662, 671 |
| AfeI | AGCGCT | 1 cut(s) | 74 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 198, 449, 520, 573, 602, 646 |
| AflIII | ACRYGT | 3 cut(s) | 551, 569, 705 |
| AgsI | TTSAA | 5 cut(s) | 112, 119, 148, 161, 396 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 215 |
| AjnI | CCWGG | 1 cut(s) | 595 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 60, 92 |
| AluBI | AGCT | 7 cut(s) | 52, 64, 176, 232, 334, 356, 500 |
| AluI | AGCT | 7 cut(s) | 52, 64, 176, 232, 334, 356, 500 |
| Alw21I | GWGCWC | 2 cut(s) | 667, 676 |
| Alw44I | GTGCAC | 2 cut(s) | 663, 672 |
| AlwI | GGATC | 1 cut(s) | 323 |
| Aor51HI | AGCGCT | 1 cut(s) | 74 |
| AoxI | GGCC | 2 cut(s) | 398, 653 |
| ApaLI | GTGCAC | 2 cut(s) | 663, 672 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 177 |
| AspA2I | CCTAGG | 1 cut(s) | 644 |
| AspLEI | GCGC | 3 cut(s) | 75, 456, 614 |
| AspS9I | GGNCC | 1 cut(s) | 399 |
| AvrII | CCTAGG | 1 cut(s) | 644 |
| BaeGI | GKGCMC | 2 cut(s) | 667, 676 |
| BanI | GGYRCC | 2 cut(s) | 611, 632 |
| BauI | CACGAG | 2 cut(s) | 377, 621 |
| BbrPI | CACGTG | 3 cut(s) | 321, 554, 572 |
| Bbv12I | GWGCWC | 2 cut(s) | 667, 676 |
| BccI | CCATC | 1 cut(s) | 551 |
| BceAI | ACGGC | 1 cut(s) | 668 |
| BciT130I | CCWGG | 1 cut(s) | 597 |
| BciVI | GTATCC | 1 cut(s) | 602 |
| BfaI | CTAG | 2 cut(s) | 65, 645 |
| BfmI | CTRYAG | 2 cut(s) | 185, 351 |
| BfoI | RGCGCY | 2 cut(s) | 76, 615 |
| BfuI | GTATCC | 1 cut(s) | 602 |
| BlnI | CCTAGG | 1 cut(s) | 644 |
| Bme1390I | CCNGG | 1 cut(s) | 597 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 215 |
| BmgT120I | GGNCC | 1 cut(s) | 399 |
| BmiI | GGNNCC | 2 cut(s) | 613, 634 |
| BmrFI | CCNGG | 1 cut(s) | 597 |
| BmsI | GCATC | 1 cut(s) | 31 |
| BoxI | GACNNNNGTC | 1 cut(s) | 708 |
| BsaAI | YACGTR | 3 cut(s) | 321, 554, 572 |
| BsaHI | GRCGYC | 1 cut(s) | 612 |
| BsaJI | CCNNGG | 4 cut(s) | 36, 595, 615, 644 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 14, 44, 568, 598, 625, 655 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 198, 449, 520, 573, 602, 646 |
| Bse118I | RCCGGY | 1 cut(s) | 534 |
| Bse3DI | GCAATG | 2 cut(s) | 88, 568 |
| BseBI | CCWGG | 1 cut(s) | 597 |
| BseDI | CCNNGG | 4 cut(s) | 36, 595, 615, 644 |
| BseGI | GGATG | 1 cut(s) | 46 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 198, 449, 520, 573, 602, 646 |
| BseMI | GCAATG | 2 cut(s) | 88, 568 |
| BseMII | CTCAG | 3 cut(s) | 28, 348, 692 |
| BseRI | GAGGAG | 1 cut(s) | 89 |
| BseSI | GKGCMC | 2 cut(s) | 667, 676 |
| BsgI | GTGCAG | 1 cut(s) | 116 |
| BshFI | GGCC | 2 cut(s) | 400, 655 |
| BshNI | GGYRCC | 2 cut(s) | 611, 632 |
| BsiHKAI | GWGCWC | 2 cut(s) | 667, 676 |
| BsiSI | CCGG | 1 cut(s) | 535 |
| BslFI | GGGAC | 1 cut(s) | 504 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 198, 449, 520, 573, 602, 646 |
| BsmFI | GGGAC | 1 cut(s) | 504 |
| BsnI | GGCC | 2 cut(s) | 400, 655 |
| Bsp1286I | GDGCHC | 2 cut(s) | 667, 676 |
| Bsp143I | GATC | 1 cut(s) | 315 |
| Bsp19I | CCATGG | 1 cut(s) | 615 |
| BspACI | CCGC | 1 cut(s) | 292 |
| BspANI | GGCC | 2 cut(s) | 400, 655 |
| BspCNI | CTCAG | 3 cut(s) | 27, 349, 691 |
| BspHI | TCATGA | 1 cut(s) | 421 |
| BspLI | GGNNCC | 2 cut(s) | 613, 634 |
| BspPI | GGATC | 1 cut(s) | 323 |
| BspQI | GCTCTTC | 2 cut(s) | 63, 183 |
| BspT107I | GGYRCC | 2 cut(s) | 611, 632 |
| BsrDI | GCAATG | 2 cut(s) | 88, 568 |
| BsrFI | RCCGGY | 1 cut(s) | 534 |
| BssAI | RCCGGY | 1 cut(s) | 534 |
| BssECI | CCNNGG | 4 cut(s) | 36, 595, 615, 644 |
| BssMI | GATC | 1 cut(s) | 315 |
| BssNI | GRCGYC | 1 cut(s) | 612 |
| BssSI | CACGAG | 2 cut(s) | 377, 621 |
| BssT1I | CCWWGG | 3 cut(s) | 36, 615, 644 |
| Bst2BI | CACGAG | 2 cut(s) | 377, 621 |
| Bst2UI | CCWGG | 1 cut(s) | 597 |
| Bst4CI | ACNGT | 1 cut(s) | 189 |
| Bst6I | CTCTTC | 2 cut(s) | 63, 183 |
| BstACI | GRCGYC | 1 cut(s) | 612 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 671 |
| BstBAI | YACGTR | 3 cut(s) | 321, 554, 572 |
| BstDEI | CTNAG | 4 cut(s) | 14, 357, 471, 678 |
| BstDSI | CCRYGG | 1 cut(s) | 615 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 447 |
| BstF5I | GGATG | 1 cut(s) | 46 |
| BstH2I | RGCGCY | 2 cut(s) | 76, 615 |
| BstHHI | GCGC | 3 cut(s) | 75, 456, 614 |
| BstKTI | GATC | 1 cut(s) | 318 |
| BstMBI | GATC | 1 cut(s) | 315 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 70, 460, 671 |
| BstNI | CCWGG | 1 cut(s) | 597 |
| BstNSI | RCATGY | 1 cut(s) | 709 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 708 |
| BstSCI | CCNGG | 1 cut(s) | 595 |
| BstSFI | CTRYAG | 2 cut(s) | 185, 351 |
| BstSLI | GKGCMC | 2 cut(s) | 667, 676 |
| BsuI | GTATCC | 1 cut(s) | 602 |
| BsuRI | GGCC | 2 cut(s) | 400, 655 |
| BtgI | CCRYGG | 1 cut(s) | 615 |
| BtsCI | GGATG | 1 cut(s) | 46 |
| BtsIMutI | CAGTG | 1 cut(s) | 294 |
| CciI | TCATGA | 1 cut(s) | 421 |
| CfoI | GCGC | 3 cut(s) | 75, 456, 614 |
| Cfr10I | RCCGGY | 1 cut(s) | 534 |
| Cfr13I | GGNCC | 1 cut(s) | 399 |
| CviAII | CATG | 5 cut(s) | 193, 365, 422, 616, 706 |
| DdeI | CTNAG | 4 cut(s) | 14, 357, 471, 678 |
| DinI | GGCGCC | 1 cut(s) | 613 |
| DpnI | GATC | 1 cut(s) | 317 |
| DpnII | GATC | 1 cut(s) | 315 |
| DraIII | CACNNNGTG | 2 cut(s) | 662, 671 |
| DriI | GACNNNNNGTC | 1 cut(s) | 215 |
| EaeI | YGGCCR | 1 cut(s) | 653 |
| Eam1104I | CTCTTC | 2 cut(s) | 63, 183 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 215 |
| EarI | CTCTTC | 2 cut(s) | 63, 183 |
| Eco130I | CCWWGG | 3 cut(s) | 36, 615, 644 |
| Eco47III | AGCGCT | 1 cut(s) | 74 |
| Eco57I | CTGAAG | 1 cut(s) | 318 |
| Eco72I | CACGTG | 3 cut(s) | 321, 554, 572 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 447 |
| EcoRII | CCWGG | 1 cut(s) | 595 |
| EcoT14I | CCWWGG | 3 cut(s) | 36, 615, 644 |
| EgeI | GGCGCC | 1 cut(s) | 613 |
| EheI | GGCGCC | 1 cut(s) | 613 |
| ErhI | CCWWGG | 3 cut(s) | 36, 615, 644 |
| FaeI | CATG | 5 cut(s) | 196, 368, 425, 619, 709 |
| FaqI | GGGAC | 1 cut(s) | 504 |
| FatI | CATG | 5 cut(s) | 192, 364, 421, 615, 705 |
| FblI | GTMKAC | 1 cut(s) | 32 |
| FokI | GGATG | 1 cut(s) | 53 |
| FspBI | CTAG | 2 cut(s) | 65, 645 |
| GlaI | GCGC | 3 cut(s) | 74, 455, 613 |
| HaeII | RGCGCY | 2 cut(s) | 76, 615 |
| HaeIII | GGCC | 2 cut(s) | 400, 655 |
| HapII | CCGG | 1 cut(s) | 535 |
| HhaI | GCGC | 3 cut(s) | 75, 456, 614 |
| Hin1I | GRCGYC | 1 cut(s) | 612 |
| Hin1II | CATG | 5 cut(s) | 196, 368, 425, 619, 709 |
| Hin6I | GCGC | 3 cut(s) | 73, 454, 612 |
| HinP1I | GCGC | 3 cut(s) | 73, 454, 612 |
| HincII | GTYRAC | 1 cut(s) | 33 |
| HindII | GTYRAC | 1 cut(s) | 33 |
| HpaII | CCGG | 1 cut(s) | 535 |
| Hpy166II | GTNNAC | 4 cut(s) | 33, 209, 665, 674 |
| Hpy188I | TCNGA | 1 cut(s) | 172 |
| Hpy188III | TCNNGA | 2 cut(s) | 379, 422 |
| Hpy8I | GTNNAC | 4 cut(s) | 33, 209, 665, 674 |
| HpyAV | CCTTC | 3 cut(s) | 106, 265, 518 |
| HpyCH4III | ACNGT | 1 cut(s) | 189 |
| HpyCH4IV | ACGT | 6 cut(s) | 320, 493, 553, 571, 661, 670 |
| HpyCH4V | TGCA | 5 cut(s) | 44, 133, 440, 665, 674 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 70, 460, 671 |
| HpyF3I | CTNAG | 4 cut(s) | 14, 357, 471, 678 |
| HpySE526I | ACGT | 6 cut(s) | 320, 493, 553, 571, 661, 670 |
| Hsp92I | GRCGYC | 1 cut(s) | 612 |
| Hsp92II | CATG | 5 cut(s) | 196, 368, 425, 619, 709 |
| HspAI | GCGC | 3 cut(s) | 73, 454, 612 |
| KasI | GGCGCC | 1 cut(s) | 611 |
| Kzo9I | GATC | 1 cut(s) | 315 |
| LguI | GCTCTTC | 2 cut(s) | 63, 183 |
| LmnI | GCTCC | 2 cut(s) | 460, 505 |
| LpnPI | CCDG | 4 cut(s) | 294, 548, 582, 609 |
| LweI | GCATC | 1 cut(s) | 31 |
| MaeI | CTAG | 2 cut(s) | 65, 645 |
| MaeII | ACGT | 6 cut(s) | 320, 493, 553, 571, 661, 670 |
| MaeIII | GTNAC | 1 cut(s) | 217 |
| MalI | GATC | 1 cut(s) | 317 |
| MboI | GATC | 1 cut(s) | 315 |
| MboII | GAAGA | 2 cut(s) | 80, 170 |
| MhlI | GDGCHC | 2 cut(s) | 667, 676 |
| MluCI | AATT | 5 cut(s) | 166, 234, 385, 391, 430 |
| Mly113I | GGCGCC | 1 cut(s) | 612 |
| MroXI | GAANNNNTTC | 1 cut(s) | 177 |
| MseI | TTAA | 1 cut(s) | 683 |
| MslI | CAYNNNNRTG | 1 cut(s) | 377 |
| MspI | CCGG | 1 cut(s) | 535 |
| MspR9I | CCNGG | 1 cut(s) | 597 |
| MvaI | CCWGG | 1 cut(s) | 597 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 70, 460, 671 |
| NarI | GGCGCC | 1 cut(s) | 612 |
| NcoI | CCATGG | 1 cut(s) | 615 |
| NdeII | GATC | 1 cut(s) | 315 |
| NlaIII | CATG | 5 cut(s) | 196, 368, 425, 619, 709 |
| NlaIV | GGNNCC | 2 cut(s) | 613, 634 |
| NmuCI | GTSAC | 1 cut(s) | 217 |
| NspI | RCATGY | 1 cut(s) | 709 |
| PagI | TCATGA | 1 cut(s) | 421 |
| PciI | ACATGT | 1 cut(s) | 705 |
| PciSI | GCTCTTC | 2 cut(s) | 63, 183 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 658, 667 |
| PdmI | GAANNNNTTC | 1 cut(s) | 177 |
| PluTI | GGCGCC | 1 cut(s) | 615 |
| PmaCI | CACGTG | 3 cut(s) | 321, 554, 572 |
| PmlI | CACGTG | 3 cut(s) | 321, 554, 572 |
| Ppu21I | YACGTR | 3 cut(s) | 321, 554, 572 |
| PscI | ACATGT | 1 cut(s) | 705 |
| PshAI | GACNNNNGTC | 1 cut(s) | 708 |
| PsiI | TTATAA | 2 cut(s) | 390, 435 |
| Psp6I | CCWGG | 1 cut(s) | 595 |
| PspCI | CACGTG | 3 cut(s) | 321, 554, 572 |
| PspGI | CCWGG | 1 cut(s) | 595 |
| PspN4I | GGNNCC | 2 cut(s) | 613, 634 |
| PspPI | GGNCC | 1 cut(s) | 399 |
| RseI | CAYNNNNRTG | 1 cut(s) | 377 |
| SalI | GTCGAC | 1 cut(s) | 31 |
| SapI | GCTCTTC | 2 cut(s) | 63, 183 |
| SaqAI | TTAA | 1 cut(s) | 683 |
| Sau3AI | GATC | 1 cut(s) | 315 |
| Sau96I | GGNCC | 1 cut(s) | 399 |
| ScrFI | CCNGG | 1 cut(s) | 597 |
| SduI | GDGCHC | 2 cut(s) | 667, 676 |
| SfaNI | GCATC | 1 cut(s) | 31 |
| SfcI | CTRYAG | 2 cut(s) | 185, 351 |
| SfoI | GGCGCC | 1 cut(s) | 613 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 377 |
| Sse9I | AATT | 5 cut(s) | 166, 234, 385, 391, 430 |
| SsiI | CCGC | 1 cut(s) | 292 |
| SspDI | GGCGCC | 1 cut(s) | 611 |
| SspI | AATATT | 1 cut(s) | 92 |
| SspMI | CTAG | 2 cut(s) | 65, 645 |
| StyD4I | CCNGG | 1 cut(s) | 595 |
| StyI | CCWWGG | 3 cut(s) | 36, 615, 644 |
| TaaI | ACNGT | 1 cut(s) | 189 |
| TaiI | ACGT | 6 cut(s) | 323, 496, 556, 574, 664, 673 |
| TaqI | TCGA | 1 cut(s) | 32 |
| TasI | AATT | 5 cut(s) | 166, 234, 385, 391, 430 |
| Tru1I | TTAA | 1 cut(s) | 683 |
| Tru9I | TTAA | 1 cut(s) | 683 |
| TscAI | CASTG | 1 cut(s) | 301 |
| TseFI | GTSAC | 1 cut(s) | 217 |
| Tsp45I | GTSAC | 1 cut(s) | 217 |
| TspDTI | ATGAA | 2 cut(s) | 317, 410 |
| TspGWI | ACGGA | 1 cut(s) | 328 |
| TspRI | CASTG | 1 cut(s) | 301 |
| VneI | GTGCAC | 2 cut(s) | 663, 672 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 447 |
| XceI | RCATGY | 1 cut(s) | 709 |
| XmaJI | CCTAGG | 1 cut(s) | 644 |
| XmiI | GTMKAC | 1 cut(s) | 32 |
| XmnI | GAANNNNTTC | 1 cut(s) | 177 |
| XspI | CTAG | 2 cut(s) | 65, 645 |