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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 387 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 450 |
| AccBSI | CCGCTC | 1 cut(s) | 415 |
| AciI | CCGC | 4 cut(s) | 227, 415, 463, 484 |
| AclWI | GGATC | 1 cut(s) | 275 |
| AcuI | CTGAAG | 2 cut(s) | 270, 702 |
| AcvI | CACGTG | 2 cut(s) | 505, 523 |
| AdeI | CACNNNGTG | 2 cut(s) | 508, 613 |
| AfaI | GTAC | 2 cut(s) | 247, 617 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 64, 401, 402, 472, 524, 553 |
| AflIII | ACRYGT | 2 cut(s) | 502, 520 |
| AgsI | TTSAA | 6 cut(s) | 71, 100, 123, 348, 576, 676 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 167 |
| AluBI | AGCT | 6 cut(s) | 48, 184, 286, 308, 572, 680 |
| AluI | AGCT | 6 cut(s) | 48, 184, 286, 308, 572, 680 |
| Alw21I | GWGCWC | 2 cut(s) | 609, 696 |
| Alw26I | GTCTC | 1 cut(s) | 642 |
| Alw44I | GTGCAC | 1 cut(s) | 692 |
| AlwI | GGATC | 1 cut(s) | 275 |
| AoxI | GGCC | 2 cut(s) | 350, 534 |
| ApaLI | GTGCAC | 1 cut(s) | 692 |
| ApeKI | GCWGC | 1 cut(s) | 704 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 86, 118 |
| AspA2I | CCTAGG | 1 cut(s) | 422 |
| AspLEI | GCGC | 2 cut(s) | 87, 408 |
| AspS9I | GGNCC | 4 cut(s) | 351, 452, 534, 595 |
| AsuHPI | GGTGA | 1 cut(s) | 652 |
| AvaII | GGWCC | 2 cut(s) | 452, 595 |
| AvrII | CCTAGG | 1 cut(s) | 422 |
| AxyI | CCTNAGG | 1 cut(s) | 599 |
| BaeGI | GKGCMC | 1 cut(s) | 696 |
| BauI | CACGAG | 1 cut(s) | 271 |
| BbrPI | CACGTG | 2 cut(s) | 505, 523 |
| BbsI | GAAGAC | 1 cut(s) | 200 |
| Bbv12I | GWGCWC | 2 cut(s) | 609, 696 |
| BbvI | GCAGC | 1 cut(s) | 691 |
| BccI | CCATC | 1 cut(s) | 680 |
| BceAI | ACGGC | 1 cut(s) | 521 |
| BcoDI | GTCTC | 1 cut(s) | 642 |
| BfaI | CTAG | 2 cut(s) | 423, 569 |
| BfmI | CTRYAG | 2 cut(s) | 303, 705 |
| BisI | GCNGC | 1 cut(s) | 705 |
| BlnI | CCTAGG | 1 cut(s) | 422 |
| BlsI | GCNGC | 1 cut(s) | 706 |
| Bme18I | GGWCC | 2 cut(s) | 452, 595 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 167 |
| BmgT120I | GGNCC | 4 cut(s) | 351, 452, 534, 595 |
| BmiI | GGNNCC | 4 cut(s) | 419, 453, 535, 596 |
| BmsI | GCATC | 1 cut(s) | 691 |
| BpiI | GAAGAC | 1 cut(s) | 200 |
| BsaAI | YACGTR | 2 cut(s) | 505, 523 |
| BsaJI | CCNNGG | 3 cut(s) | 422, 537, 552 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 64, 401, 402, 472, 524, 553 |
| Bse1I | ACTGG | 1 cut(s) | 265 |
| Bse21I | CCTNAGG | 1 cut(s) | 599 |
| Bse3DI | GCAATG | 2 cut(s) | 222, 519 |
| BseDI | CCNNGG | 3 cut(s) | 422, 537, 552 |
| BseGI | GGATG | 1 cut(s) | 706 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 64, 401, 402, 472, 524, 553 |
| BseMI | GCAATG | 2 cut(s) | 222, 519 |
| BseMII | CTCAG | 3 cut(s) | 165, 377, 590 |
| BseNI | ACTGG | 1 cut(s) | 265 |
| BseSI | GKGCMC | 1 cut(s) | 696 |
| BseXI | GCAGC | 1 cut(s) | 691 |
| BshFI | GGCC | 2 cut(s) | 352, 536 |
| BsiHKAI | GWGCWC | 2 cut(s) | 609, 696 |
| BslFI | GGGAC | 3 cut(s) | 447, 456, 608 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 64, 401, 402, 472, 524, 553 |
| BsmAI | GTCTC | 1 cut(s) | 642 |
| BsmBI | CGTCTC | 1 cut(s) | 642 |
| BsmFI | GGGAC | 3 cut(s) | 447, 456, 608 |
| BsnI | GGCC | 2 cut(s) | 352, 536 |
| Bsp1286I | GDGCHC | 2 cut(s) | 609, 696 |
| Bsp143I | GATC | 1 cut(s) | 267 |
| BspACI | CCGC | 4 cut(s) | 227, 415, 463, 484 |
| BspANI | GGCC | 2 cut(s) | 352, 536 |
| BspCNI | CTCAG | 3 cut(s) | 166, 376, 591 |
| BspHI | TCATGA | 1 cut(s) | 373 |
| BspLI | GGNNCC | 4 cut(s) | 419, 453, 535, 596 |
| BspMAI | CTGCAG | 1 cut(s) | 709 |
| BspPI | GGATC | 1 cut(s) | 275 |
| BsrBI | CCGCTC | 1 cut(s) | 415 |
| BsrDI | GCAATG | 2 cut(s) | 222, 519 |
| BsrI | ACTGG | 1 cut(s) | 265 |
| BssECI | CCNNGG | 3 cut(s) | 422, 537, 552 |
| BssMI | GATC | 1 cut(s) | 267 |
| BssSI | CACGAG | 1 cut(s) | 271 |
| BssT1I | CCWWGG | 1 cut(s) | 422 |
| Bst2BI | CACGAG | 1 cut(s) | 271 |
| Bst4CI | ACNGT | 2 cut(s) | 62, 245 |
| BstBAI | YACGTR | 2 cut(s) | 505, 523 |
| BstC8I | GCNNGC | 1 cut(s) | 559 |
| BstDEI | CTNAG | 4 cut(s) | 174, 309, 363, 599 |
| BstDSI | CCRYGG | 2 cut(s) | 537, 552 |
| BstF5I | GGATG | 1 cut(s) | 706 |
| BstHHI | GCGC | 2 cut(s) | 87, 408 |
| BstKTI | GATC | 1 cut(s) | 270 |
| BstMAI | GTCTC | 1 cut(s) | 642 |
| BstMBI | GATC | 1 cut(s) | 267 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 412 |
| BstSFI | CTRYAG | 2 cut(s) | 303, 705 |
| BstSLI | GKGCMC | 1 cut(s) | 696 |
| BstV1I | GCAGC | 1 cut(s) | 691 |
| BstV2I | GAAGAC | 1 cut(s) | 200 |
| Bsu36I | CCTNAGG | 1 cut(s) | 599 |
| BsuRI | GGCC | 2 cut(s) | 352, 536 |
| BtgI | CCRYGG | 2 cut(s) | 537, 552 |
| BtsCI | GGATG | 1 cut(s) | 706 |
| BtsIMutI | CAGTG | 1 cut(s) | 171 |
| Cac8I | GCNNGC | 1 cut(s) | 559 |
| CciI | TCATGA | 1 cut(s) | 373 |
| CfoI | GCGC | 2 cut(s) | 87, 408 |
| Cfr13I | GGNCC | 4 cut(s) | 351, 452, 534, 595 |
| Csp6I | GTAC | 2 cut(s) | 246, 616 |
| CviAII | CATG | 6 cut(s) | 31, 145, 317, 374, 437, 620 |
| CviQI | GTAC | 2 cut(s) | 246, 616 |
| DdeI | CTNAG | 4 cut(s) | 174, 309, 363, 599 |
| DpnI | GATC | 1 cut(s) | 269 |
| DpnII | GATC | 1 cut(s) | 267 |
| DraIII | CACNNNGTG | 2 cut(s) | 508, 613 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 450 |
| DriI | GACNNNNNGTC | 1 cut(s) | 167 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 450 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 167 |
| Eco130I | CCWWGG | 1 cut(s) | 422 |
| Eco47I | GGWCC | 2 cut(s) | 452, 595 |
| Eco57I | CTGAAG | 2 cut(s) | 270, 702 |
| Eco72I | CACGTG | 2 cut(s) | 505, 523 |
| Eco81I | CCTNAGG | 1 cut(s) | 599 |
| EcoO109I | RGGNCCY | 1 cut(s) | 595 |
| EcoT14I | CCWWGG | 1 cut(s) | 422 |
| ErhI | CCWWGG | 1 cut(s) | 422 |
| Esp3I | CGTCTC | 1 cut(s) | 642 |
| FaeI | CATG | 6 cut(s) | 34, 148, 320, 377, 440, 623 |
| FaqI | GGGAC | 3 cut(s) | 447, 456, 608 |
| FatI | CATG | 6 cut(s) | 30, 144, 316, 373, 436, 619 |
| Fnu4HI | GCNGC | 1 cut(s) | 705 |
| FokI | GGATG | 1 cut(s) | 713 |
| Fsp4HI | GCNGC | 1 cut(s) | 705 |
| FspBI | CTAG | 2 cut(s) | 423, 569 |
| GlaI | GCGC | 2 cut(s) | 86, 407 |
| GluI | GCNGC | 1 cut(s) | 705 |
| HaeIII | GGCC | 2 cut(s) | 352, 536 |
| HhaI | GCGC | 2 cut(s) | 87, 408 |
| Hin1II | CATG | 6 cut(s) | 34, 148, 320, 377, 440, 623 |
| Hin6I | GCGC | 2 cut(s) | 85, 406 |
| HinP1I | GCGC | 2 cut(s) | 85, 406 |
| HinfI | GANTC | 3 cut(s) | 38, 153, 196 |
| HphI | GGTGA | 1 cut(s) | 652 |
| Hpy166II | GTNNAC | 3 cut(s) | 161, 616, 694 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 366 |
| Hpy188III | TCNNGA | 4 cut(s) | 271, 374, 473, 576 |
| Hpy8I | GTNNAC | 3 cut(s) | 161, 616, 694 |
| HpyAV | CCTTC | 3 cut(s) | 217, 395, 470 |
| HpyCH4III | ACNGT | 2 cut(s) | 62, 245 |
| HpyCH4IV | ACGT | 4 cut(s) | 445, 504, 522, 651 |
| HpyCH4V | TGCA | 4 cut(s) | 392, 623, 694, 707 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 412 |
| HpyF3I | CTNAG | 4 cut(s) | 174, 309, 363, 599 |
| HpySE526I | ACGT | 4 cut(s) | 445, 504, 522, 651 |
| Hsp92II | CATG | 6 cut(s) | 34, 148, 320, 377, 440, 623 |
| HspAI | GCGC | 2 cut(s) | 85, 406 |
| Kzo9I | GATC | 1 cut(s) | 267 |
| LmnI | GCTCC | 3 cut(s) | 412, 494, 604 |
| LpnPI | CCDG | 6 cut(s) | 180, 246, 458, 568, 577, 611 |
| Lsp1109I | GCAGC | 1 cut(s) | 691 |
| LweI | GCATC | 1 cut(s) | 691 |
| MaeI | CTAG | 2 cut(s) | 423, 569 |
| MaeII | ACGT | 4 cut(s) | 445, 504, 522, 651 |
| MaeIII | GTNAC | 1 cut(s) | 169 |
| MalI | GATC | 1 cut(s) | 269 |
| MbiI | CCGCTC | 1 cut(s) | 415 |
| MboI | GATC | 1 cut(s) | 267 |
| MboII | GAAGA | 6 cut(s) | 205, 638, 641, 644, 647, 695 |
| MhlI | GDGCHC | 2 cut(s) | 609, 696 |
| MluCI | AATT | 4 cut(s) | 118, 186, 343, 382 |
| MlyI | GAGTC | 2 cut(s) | 32, 190 |
| MnlI | CCTC | 8 cut(s) | 221, 267, 327, 370, 433, 523, 594, 661 |
| MseI | TTAA | 1 cut(s) | 654 |
| MslI | CAYNNNNRTG | 1 cut(s) | 699 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 412 |
| NdeII | GATC | 1 cut(s) | 267 |
| NlaIII | CATG | 6 cut(s) | 34, 148, 320, 377, 440, 623 |
| NlaIV | GGNNCC | 4 cut(s) | 419, 453, 535, 596 |
| NmuCI | GTSAC | 1 cut(s) | 169 |
| PagI | TCATGA | 1 cut(s) | 373 |
| PfeI | GAWTC | 1 cut(s) | 153 |
| PkrI | GCNGC | 1 cut(s) | 706 |
| PleI | GAGTC | 2 cut(s) | 32, 190 |
| PmaCI | CACGTG | 2 cut(s) | 505, 523 |
| PmlI | CACGTG | 2 cut(s) | 505, 523 |
| PpsI | GAGTC | 2 cut(s) | 32, 190 |
| Ppu21I | YACGTR | 2 cut(s) | 505, 523 |
| PpuMI | RGGWCCY | 1 cut(s) | 595 |
| PsiI | TTATAA | 1 cut(s) | 387 |
| Psp5II | RGGWCCY | 1 cut(s) | 595 |
| PspCI | CACGTG | 2 cut(s) | 505, 523 |
| PspN4I | GGNNCC | 4 cut(s) | 419, 453, 535, 596 |
| PspPI | GGNCC | 4 cut(s) | 351, 452, 534, 595 |
| PspPPI | RGGWCCY | 1 cut(s) | 595 |
| PstI | CTGCAG | 1 cut(s) | 709 |
| RsaI | GTAC | 2 cut(s) | 247, 617 |
| RsaNI | GTAC | 2 cut(s) | 246, 616 |
| RseI | CAYNNNNRTG | 1 cut(s) | 699 |
| SaqAI | TTAA | 1 cut(s) | 654 |
| SatI | GCNGC | 1 cut(s) | 705 |
| Sau3AI | GATC | 1 cut(s) | 267 |
| Sau96I | GGNCC | 4 cut(s) | 351, 452, 534, 595 |
| SchI | GAGTC | 2 cut(s) | 32, 190 |
| SduI | GDGCHC | 2 cut(s) | 609, 696 |
| SfaNI | GCATC | 1 cut(s) | 691 |
| SfcI | CTRYAG | 2 cut(s) | 303, 705 |
| SinI | GGWCC | 2 cut(s) | 452, 595 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 699 |
| Sse9I | AATT | 4 cut(s) | 118, 186, 343, 382 |
| SsiI | CCGC | 4 cut(s) | 227, 415, 463, 484 |
| SspMI | CTAG | 2 cut(s) | 423, 569 |
| StyI | CCWWGG | 1 cut(s) | 422 |
| TaaI | ACNGT | 2 cut(s) | 62, 245 |
| TaiI | ACGT | 4 cut(s) | 448, 507, 525, 654 |
| TaqI | TCGA | 2 cut(s) | 5, 21 |
| TasI | AATT | 4 cut(s) | 118, 186, 343, 382 |
| TfiI | GAWTC | 1 cut(s) | 153 |
| Tru1I | TTAA | 1 cut(s) | 654 |
| Tru9I | TTAA | 1 cut(s) | 654 |
| TscAI | CASTG | 1 cut(s) | 178 |
| TseFI | GTSAC | 1 cut(s) | 169 |
| TseI | GCWGC | 1 cut(s) | 704 |
| Tsp45I | GTSAC | 1 cut(s) | 169 |
| TspDTI | ATGAA | 3 cut(s) | 24, 269, 362 |
| TspGWI | ACGGA | 2 cut(s) | 280, 541 |
| TspRI | CASTG | 1 cut(s) | 178 |
| VneI | GTGCAC | 1 cut(s) | 692 |
| VpaK11BI | GGWCC | 2 cut(s) | 452, 595 |
| XmaJI | CCTAGG | 1 cut(s) | 422 |
| XspI | CTAG | 2 cut(s) | 423, 569 |