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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 35 |
| AccII | CGCG | 7 cut(s) | 243, 263, 357, 373, 394, 402, 433 |
| AclI | AACGTT | 1 cut(s) | 287 |
| AcsI | RAATTY | 2 cut(s) | 92, 806 |
| AfaI | GTAC | 2 cut(s) | 101, 626 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 34, 35, 280, 304, 326 |
| AgsI | TTSAA | 1 cut(s) | 754 |
| AjnI | CCWGG | 3 cut(s) | 185, 483, 507 |
| AluBI | AGCT | 4 cut(s) | 109, 221, 533, 539 |
| AluI | AGCT | 4 cut(s) | 109, 221, 533, 539 |
| Alw21I | GWGCWC | 1 cut(s) | 111 |
| Alw26I | GTCTC | 2 cut(s) | 433, 670 |
| Ama87I | CYCGRG | 2 cut(s) | 28, 497 |
| AoxI | GGCC | 2 cut(s) | 403, 471 |
| ApeKI | GCWGC | 3 cut(s) | 152, 208, 557 |
| ApoI | RAATTY | 2 cut(s) | 92, 806 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 783 |
| AspLEI | GCGC | 3 cut(s) | 137, 213, 265 |
| AspS9I | GGNCC | 2 cut(s) | 307, 329 |
| AsuC2I | CCSGG | 3 cut(s) | 11, 281, 439 |
| AvaI | CYCGRG | 2 cut(s) | 28, 497 |
| AvaII | GGWCC | 2 cut(s) | 307, 329 |
| BanII | GRGCYC | 2 cut(s) | 111, 353 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 839, 871 |
| BbsI | GAAGAC | 2 cut(s) | 651, 854 |
| Bbv12I | GWGCWC | 1 cut(s) | 111 |
| BbvI | GCAGC | 3 cut(s) | 164, 220, 569 |
| BccI | CCATC | 2 cut(s) | 470, 872 |
| BciT130I | CCWGG | 3 cut(s) | 187, 485, 509 |
| BciVI | GTATCC | 1 cut(s) | 481 |
| BcnI | CCSGG | 3 cut(s) | 11, 281, 439 |
| BcoDI | GTCTC | 2 cut(s) | 433, 670 |
| BfaI | CTAG | 2 cut(s) | 378, 716 |
| BfoI | RGCGCY | 2 cut(s) | 138, 214 |
| BfuI | GTATCC | 1 cut(s) | 481 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 132 |
| BisI | GCNGC | 4 cut(s) | 153, 209, 403, 558 |
| BlsI | GCNGC | 4 cut(s) | 154, 210, 404, 559 |
| Bme1390I | CCNGG | 6 cut(s) | 11, 187, 281, 439, 485, 509 |
| Bme18I | GGWCC | 2 cut(s) | 307, 329 |
| BmeT110I | CYCGRG | 2 cut(s) | 28, 497 |
| BmgT120I | GGNCC | 2 cut(s) | 307, 329 |
| BmiI | GGNNCC | 2 cut(s) | 309, 331 |
| BmrFI | CCNGG | 6 cut(s) | 11, 187, 281, 439, 485, 509 |
| BmsI | GCATC | 2 cut(s) | 170, 472 |
| BpiI | GAAGAC | 2 cut(s) | 651, 854 |
| BpmI | CTGGAG | 1 cut(s) | 605 |
| BpuEI | CTTGAG | 2 cut(s) | 452, 519 |
| BpuMI | CCSGG | 3 cut(s) | 11, 281, 439 |
| BsaI | GGTCTC | 2 cut(s) | 433, 670 |
| BsaJI | CCNNGG | 3 cut(s) | 279, 400, 437 |
| BsaWI | WCCGGW | 1 cut(s) | 53 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 130, 160 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 34, 35, 280, 304, 326 |
| Bse118I | RCCGGY | 1 cut(s) | 131 |
| Bse1I | ACTGG | 1 cut(s) | 622 |
| BseBI | CCWGG | 3 cut(s) | 187, 485, 509 |
| BseDI | CCNNGG | 3 cut(s) | 279, 400, 437 |
| BseGI | GGATG | 2 cut(s) | 588, 616 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 34, 35, 280, 304, 326 |
| BseNI | ACTGG | 1 cut(s) | 622 |
| BseXI | GCAGC | 3 cut(s) | 164, 220, 569 |
| Bsh1236I | CGCG | 7 cut(s) | 243, 263, 357, 373, 394, 402, 433 |
| BshFI | GGCC | 2 cut(s) | 405, 473 |
| BsiHKAI | GWGCWC | 1 cut(s) | 111 |
| BsiHKCI | CYCGRG | 2 cut(s) | 28, 497 |
| BsiSI | CCGG | 5 cut(s) | 10, 54, 132, 281, 439 |
| BslFI | GGGAC | 4 cut(s) | 222, 262, 293, 315 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 34, 35, 280, 304, 326 |
| BsmAI | GTCTC | 2 cut(s) | 433, 670 |
| BsmFI | GGGAC | 4 cut(s) | 222, 262, 293, 315 |
| BsnI | GGCC | 2 cut(s) | 405, 473 |
| Bso31I | GGTCTC | 2 cut(s) | 433, 670 |
| BsoBI | CYCGRG | 2 cut(s) | 28, 497 |
| Bsp1286I | GDGCHC | 2 cut(s) | 111, 353 |
| Bsp68I | TCGCGA | 3 cut(s) | 357, 394, 433 |
| BspANI | GGCC | 2 cut(s) | 405, 473 |
| BspFNI | CGCG | 7 cut(s) | 243, 263, 357, 373, 394, 402, 433 |
| BspHI | TCATGA | 1 cut(s) | 408 |
| BspLI | GGNNCC | 2 cut(s) | 309, 331 |
| BspTNI | GGTCTC | 2 cut(s) | 433, 670 |
| BsrBI | CCGCTC | 1 cut(s) | 35 |
| BsrFI | RCCGGY | 1 cut(s) | 131 |
| BsrI | ACTGG | 1 cut(s) | 622 |
| BssAI | RCCGGY | 1 cut(s) | 131 |
| BssECI | CCNNGG | 3 cut(s) | 279, 400, 437 |
| Bst2UI | CCWGG | 3 cut(s) | 187, 485, 509 |
| Bst4CI | ACNGT | 2 cut(s) | 307, 523 |
| BstC8I | GCNNGC | 4 cut(s) | 133, 267, 461, 531 |
| BstDEI | CTNAG | 1 cut(s) | 562 |
| BstDSI | CCRYGG | 1 cut(s) | 400 |
| BstF5I | GGATG | 2 cut(s) | 588, 616 |
| BstFNI | CGCG | 7 cut(s) | 243, 263, 357, 373, 394, 402, 433 |
| BstH2I | RGCGCY | 2 cut(s) | 138, 214 |
| BstHHI | GCGC | 3 cut(s) | 137, 213, 265 |
| BstMAI | GTCTC | 2 cut(s) | 433, 670 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 132, 143, 152, 158, 208, 227, 545, 554 |
| BstNI | CCWGG | 3 cut(s) | 187, 485, 509 |
| BstSCI | CCNGG | 6 cut(s) | 9, 185, 279, 437, 483, 507 |
| BstUI | CGCG | 7 cut(s) | 243, 263, 357, 373, 394, 402, 433 |
| BstV1I | GCAGC | 3 cut(s) | 164, 220, 569 |
| BstV2I | GAAGAC | 2 cut(s) | 651, 854 |
| BsuI | GTATCC | 1 cut(s) | 481 |
| BsuRI | GGCC | 2 cut(s) | 405, 473 |
| BtgI | CCRYGG | 1 cut(s) | 400 |
| BtsCI | GGATG | 2 cut(s) | 588, 616 |
| BtuMI | TCGCGA | 3 cut(s) | 357, 394, 433 |
| Cac8I | GCNNGC | 4 cut(s) | 133, 267, 461, 531 |
| CciI | TCATGA | 1 cut(s) | 408 |
| CfoI | GCGC | 3 cut(s) | 137, 213, 265 |
| Cfr10I | RCCGGY | 1 cut(s) | 131 |
| Cfr13I | GGNCC | 2 cut(s) | 307, 329 |
| Cfr42I | CCGCGG | 1 cut(s) | 403 |
| CsiI | ACCWGGT | 1 cut(s) | 185 |
| Csp6I | GTAC | 2 cut(s) | 100, 625 |
| CviAII | CATG | 2 cut(s) | 103, 409 |
| CviQI | GTAC | 2 cut(s) | 100, 625 |
| DdeI | CTNAG | 1 cut(s) | 562 |
| EciI | GGCGGA | 1 cut(s) | 446 |
| Ecl136II | GAGCTC | 1 cut(s) | 109 |
| Eco24I | GRGCYC | 2 cut(s) | 111, 353 |
| Eco31I | GGTCTC | 2 cut(s) | 433, 670 |
| Eco32I | GATATC | 1 cut(s) | 823 |
| Eco47I | GGWCC | 2 cut(s) | 307, 329 |
| Eco53kI | GAGCTC | 1 cut(s) | 109 |
| Eco88I | CYCGRG | 2 cut(s) | 28, 497 |
| EcoICRI | GAGCTC | 1 cut(s) | 109 |
| EcoO109I | RGGNCCY | 1 cut(s) | 329 |
| EcoRI | GAATTC | 1 cut(s) | 806 |
| EcoRII | CCWGG | 3 cut(s) | 185, 483, 507 |
| EcoRV | GATATC | 1 cut(s) | 823 |
| EcoT38I | GRGCYC | 2 cut(s) | 111, 353 |
| FaeI | CATG | 2 cut(s) | 106, 412 |
| FaiI | YATR | 6 cut(s) | 104, 410, 606, 608, 635, 732 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 210, 242 |
| FaqI | GGGAC | 4 cut(s) | 222, 262, 293, 315 |
| FatI | CATG | 2 cut(s) | 102, 408 |
| FauNDI | CATATG | 1 cut(s) | 606 |
| Fnu4HI | GCNGC | 4 cut(s) | 153, 209, 403, 558 |
| FokI | GGATG | 2 cut(s) | 575, 623 |
| FriOI | GRGCYC | 2 cut(s) | 111, 353 |
| Fsp4HI | GCNGC | 4 cut(s) | 153, 209, 403, 558 |
| FspBI | CTAG | 2 cut(s) | 378, 716 |
| GlaI | GCGC | 3 cut(s) | 136, 212, 264 |
| GluI | GCNGC | 4 cut(s) | 153, 209, 403, 558 |
| GsuI | CTGGAG | 1 cut(s) | 605 |
| HaeII | RGCGCY | 2 cut(s) | 138, 214 |
| HaeIII | GGCC | 2 cut(s) | 405, 473 |
| HapII | CCGG | 5 cut(s) | 10, 54, 132, 281, 439 |
| HhaI | GCGC | 3 cut(s) | 137, 213, 265 |
| Hin1II | CATG | 2 cut(s) | 106, 412 |
| Hin6I | GCGC | 3 cut(s) | 135, 211, 263 |
| HinP1I | GCGC | 3 cut(s) | 135, 211, 263 |
| HindIII | AAGCTT | 1 cut(s) | 537 |
| HpaII | CCGG | 5 cut(s) | 10, 54, 132, 281, 439 |
| Hpy188I | TCNGA | 2 cut(s) | 25, 778 |
| Hpy188III | TCNNGA | 8 cut(s) | 356, 393, 409, 432, 449, 497, 710, 764 |
| HpyAV | CCTTC | 4 cut(s) | 77, 304, 648, 869 |
| HpyCH4III | ACNGT | 2 cut(s) | 307, 523 |
| HpyCH4IV | ACGT | 2 cut(s) | 287, 690 |
| HpyCH4V | TGCA | 2 cut(s) | 47, 873 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 132, 143, 152, 158, 208, 227, 545, 554 |
| HpyF3I | CTNAG | 1 cut(s) | 562 |
| HpySE526I | ACGT | 2 cut(s) | 287, 690 |
| Hsp92II | CATG | 2 cut(s) | 106, 412 |
| HspAI | GCGC | 3 cut(s) | 135, 211, 263 |
| KroI | GCCGGC | 1 cut(s) | 131 |
| KroNI | GCCGGC | 1 cut(s) | 133 |
| KspI | CCGCGG | 1 cut(s) | 403 |
| LmnI | GCTCC | 3 cut(s) | 106, 151, 624 |
| Lsp1109I | GCAGC | 3 cut(s) | 164, 220, 569 |
| LweI | GCATC | 2 cut(s) | 170, 472 |
| MabI | ACCWGGT | 1 cut(s) | 185 |
| MaeI | CTAG | 2 cut(s) | 378, 716 |
| MaeII | ACGT | 2 cut(s) | 287, 690 |
| MaeIII | GTNAC | 1 cut(s) | 695 |
| MbiI | CCGCTC | 1 cut(s) | 35 |
| MboII | GAAGA | 3 cut(s) | 653, 656, 859 |
| MhlI | GDGCHC | 2 cut(s) | 111, 353 |
| MluCI | AATT | 5 cut(s) | 71, 77, 92, 492, 806 |
| MlyI | GAGTC | 6 cut(s) | 29, 353, 575, 592, 692, 844 |
| MmeI | TCCRAC | 2 cut(s) | 48, 48 |
| MnlI | CCTC | 8 cut(s) | 33, 111, 137, 167, 363, 416, 746, 878 |
| MreI | CGCCGGCG | 1 cut(s) | 131 |
| MroNI | GCCGGC | 1 cut(s) | 131 |
| MroXI | GAANNNNTTC | 1 cut(s) | 783 |
| MseI | TTAA | 2 cut(s) | 792, 800 |
| MslI | CAYNNNNRTG | 2 cut(s) | 593, 609 |
| MspA1I | CMGCKG | 2 cut(s) | 402, 425 |
| MspI | CCGG | 5 cut(s) | 10, 54, 132, 281, 439 |
| MspR9I | CCNGG | 6 cut(s) | 11, 187, 281, 439, 485, 509 |
| MvaI | CCWGG | 3 cut(s) | 187, 485, 509 |
| MvnI | CGCG | 7 cut(s) | 243, 263, 357, 373, 394, 402, 433 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 132, 143, 152, 158, 208, 227, 545, 554 |
| NaeI | GCCGGC | 1 cut(s) | 133 |
| NciI | CCSGG | 3 cut(s) | 11, 281, 439 |
| NdeI | CATATG | 1 cut(s) | 606 |
| NgoMIV | GCCGGC | 1 cut(s) | 131 |
| NlaIII | CATG | 2 cut(s) | 106, 412 |
| NlaIV | GGNNCC | 2 cut(s) | 309, 331 |
| NmuCI | GTSAC | 1 cut(s) | 695 |
| NruI | TCGCGA | 3 cut(s) | 357, 394, 433 |
| PaeR7I | CTCGAG | 1 cut(s) | 497 |
| PagI | TCATGA | 1 cut(s) | 408 |
| PdiI | GCCGGC | 1 cut(s) | 133 |
| PdmI | GAANNNNTTC | 1 cut(s) | 783 |
| PfeI | GAWTC | 4 cut(s) | 383, 412, 480, 614 |
| PfoI | TCCNGGA | 1 cut(s) | 483 |
| PkrI | GCNGC | 4 cut(s) | 154, 210, 404, 559 |
| PleI | GAGTC | 6 cut(s) | 28, 353, 574, 592, 692, 844 |
| PpsI | GAGTC | 6 cut(s) | 28, 353, 574, 592, 692, 844 |
| PpuMI | RGGWCCY | 1 cut(s) | 329 |
| Psp124BI | GAGCTC | 1 cut(s) | 111 |
| Psp1406I | AACGTT | 1 cut(s) | 287 |
| Psp5II | RGGWCCY | 1 cut(s) | 329 |
| Psp6I | CCWGG | 3 cut(s) | 185, 483, 507 |
| PspGI | CCWGG | 3 cut(s) | 185, 483, 507 |
| PspN4I | GGNNCC | 2 cut(s) | 309, 331 |
| PspPI | GGNCC | 2 cut(s) | 307, 329 |
| PspPPI | RGGWCCY | 1 cut(s) | 329 |
| RruI | TCGCGA | 3 cut(s) | 357, 394, 433 |
| RsaI | GTAC | 2 cut(s) | 101, 626 |
| RsaNI | GTAC | 2 cut(s) | 100, 625 |
| RseI | CAYNNNNRTG | 2 cut(s) | 593, 609 |
| SacI | GAGCTC | 1 cut(s) | 111 |
| SacII | CCGCGG | 1 cut(s) | 403 |
| SaqAI | TTAA | 2 cut(s) | 792, 800 |
| SatI | GCNGC | 4 cut(s) | 153, 209, 403, 558 |
| Sau96I | GGNCC | 2 cut(s) | 307, 329 |
| SchI | GAGTC | 6 cut(s) | 29, 353, 575, 592, 692, 844 |
| ScrFI | CCNGG | 6 cut(s) | 11, 187, 281, 439, 485, 509 |
| SduI | GDGCHC | 2 cut(s) | 111, 353 |
| SexAI | ACCWGGT | 1 cut(s) | 185 |
| SfaNI | GCATC | 2 cut(s) | 170, 472 |
| Sfr274I | CTCGAG | 1 cut(s) | 497 |
| Sfr303I | CCGCGG | 1 cut(s) | 403 |
| SgrAI | CRCCGGYG | 1 cut(s) | 131 |
| SgrBI | CCGCGG | 1 cut(s) | 403 |
| SinI | GGWCC | 2 cut(s) | 307, 329 |
| SlaI | CTCGAG | 1 cut(s) | 497 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 593, 609 |
| SmlI | CTYRAG | 3 cut(s) | 467, 497, 534 |
| SmoI | CTYRAG | 3 cut(s) | 467, 497, 534 |
| Sse9I | AATT | 5 cut(s) | 71, 77, 92, 492, 806 |
| SspMI | CTAG | 2 cut(s) | 378, 716 |
| SstI | GAGCTC | 1 cut(s) | 111 |
| StyD4I | CCNGG | 6 cut(s) | 9, 185, 279, 437, 483, 507 |
| TaaI | ACNGT | 2 cut(s) | 307, 523 |
| TaiI | ACGT | 2 cut(s) | 290, 693 |
| TaqI | TCGA | 2 cut(s) | 347, 498 |
| TasI | AATT | 5 cut(s) | 71, 77, 92, 492, 806 |
| TauI | GCSGC | 1 cut(s) | 405 |
| TfiI | GAWTC | 4 cut(s) | 383, 412, 480, 614 |
| Tru1I | TTAA | 2 cut(s) | 792, 800 |
| Tru9I | TTAA | 2 cut(s) | 792, 800 |
| TseFI | GTSAC | 1 cut(s) | 695 |
| TseI | GCWGC | 3 cut(s) | 152, 208, 557 |
| Tsp45I | GTSAC | 1 cut(s) | 695 |
| TspDTI | ATGAA | 3 cut(s) | 105, 650, 654 |
| TspGWI | ACGGA | 1 cut(s) | 683 |
| VpaK11BI | GGWCC | 2 cut(s) | 307, 329 |
| XapI | RAATTY | 2 cut(s) | 92, 806 |
| XhoI | CTCGAG | 1 cut(s) | 497 |
| XmnI | GAANNNNTTC | 1 cut(s) | 783 |
| XspI | CTAG | 2 cut(s) | 378, 716 |